jgi.p|Nanoce1779_2|551254, gene_509 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|551254
Unique Namegene_509
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_3:1231066..1233884 +

Link to JBrowse

Properties
Property NameValue
TranscriptId551340
ProteinId551254
Product nameendo-1,3-beta-glucanase, family GH81
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1231066..1233884 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL047ncniL047Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04830NO01G04830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|551254mRNA_509-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|551254mRNA_509Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|551254

>mRNA_509-protein ID=mRNA_509-protein|Name=jgi.p|Nanoce1779_2|551254|organism=Nannochloropsis oceanica|type=polypeptide|length=838bp
MSSGNNGSVALGIKDAVIAGGNSTSSSSGGTRKGGKAVSNTGSGNIVQNL
INNSRSSAPARDSTPLLGGGSGDLPNHSSAGGHGGGDDGLSGGGAPLHLK
GIAWLLGVAVVVAAALFGLLALRRSHAVDSVPFSHVTHPLQPTALWGAVR
RPYPTGAWWTNLVLNKGNNNVAVLPYAIKATDDNGLQISYSYFRHLSTKM
VQADLFAPDMAMAAVENTSTHYIESYDPLSVGLVFPTVNHLQHNRPSYYR
THLVRGCPYLTVEYYGCHPLVTAANMITVINGLQYREEATFQAPALTGSV
FEITVISGQQWMLFAEPAITFRWTKDGKLTSISSYTGFLRIAVAPVEGIK
PVLVEHWRAYPTGGDEGGSLSEGDMMVTYQWRRKGEGRLLMLALPHHVEI
LQDATLVGNATGVYVTLKGGMTAVLGDRWYMKEGLPVPVDVGKKGQKGEW
TGDGGGGFEFRAPRGVGNEGQKKVIREAVMSDLAAIRKGDFKRWNKTDVN
DPYWEGKRMAMYARLAVIADEVGMVPEREEAVALAAAVMTPWLGGTNDNP
FLYDTTWGGIILQSGLSNPYVNFGNTYYNDHHFQYGYFCYCAAVLARFDP
EFVRKHKRALTALVADIANDDDASPSFPLARHKDFFDGHSWASGLFEQNN
GKSQESSSEAINAYYGAHLYGRATGDKKLESFAKLLLAMELRSTRWYWHM
RNDSKVYDAVFAANRMVGVVGGLDATCHTWFGESLEYVHGINLMPFTPIT
EALLDVGYVKEEYAVLSPVLTRQEEPVAEEWKGFVYLDHAVLDPASAWEE
VQMLDKFDSGNSLSNSLWWVATRPGAGEVGKGEEGGK*
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Synonyms
Publications