jgi.p|Nanoce1779_2|541137, gene_4711 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|541137
Unique Name	gene_4711
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_9:455120..459685 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	541223
ProteinId	541137
Product name	ubiquitin carboxyl-terminal hydrolase 7
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:455120..459685 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
GO annotation for N. oceanica CCMP1779 v2	2020-03-30
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006511	ubiquitin-dependent protein catabolic process

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL006	ncniL006	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|541137	mRNA_4711-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|541137	mRNA_4711	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|541137

>mRNA_4711-protein ID=mRNA_4711-protein|Name=jgi.p|Nanoce1779_2|541137|organism=Nannochloropsis oceanica|type=polypeptide|length=1327bp
MTRLIKAPDALLDIEPQGVAQRLAGQITHRKVVEATEADEDKALQGLLTT
LRALLAFFPHRNNVTRTVKVSLGKSGLLRELFDRCLFAMPSTDPTAPRFT
ETPPPPKCKHPTSRDLALGLVLELSAECPENLREVVSVLEKHNPLGVSTE
EKERRRARVARRRSKNNSNQGAAWGRRRSESGSTGGALALGAASSSAAAS
SLQLGLSKSRTGYVGLKNLGCICYMNSTLQQLWHVKGFREGILSFGGGEE
GEGEGGREESMMWQLQCLFAHLQETDKAYYNPRGFCTALKNWEGEPTDVY
VQQDVSDFLLMFFQQVEGMTQGTNCEDVLRREFGGVIVHELIAEGGRYSS
REEPCYFLSVMVQNLRTLEQALEAYIAEEVLGDYTWERKRVVGEQGKEEV
VKEALPTVKRASLRALPRHLILHLKRFEFDYETMQQIKINDRLEFPAELD
MFPYTLEGRVAAETAAAAAAAAAAGGGIRAGGGEGGGGISTGTASEERRS
GGGHLREYYTYKLAGVVIHMGTANSGHYYSYIRERGGGRERGSGGRKKAG
WFEFNDTVVSEFDPADLEEECFGGQETGGGGGGREWTRERIRNAFLLVYD
RCDVAAEEEAPAAAAHRPAVPPGILEEILRENLEFWRKTNILTRAYFEFM
DQLLEPFYSPNLHEREREDDEGGGGLLERGLRLATQFMLGTLMDARDWEG
VREWNRRLCRAYESCVPACLWFVRLLSSVEGEGGKEGGLLWELLVETEER
EGRVAVVQLIDRVVNVLLEEKAGEGGKKRGSEDVCLELFQALLNMRGRVM
GLPRQGAAKVDCYLFLLGRMLERIEGAREMVLEGNSSSSSCLLDLLQLVN
GALELWALGRNNGENGQHDNGLLLLGNGGNGSSSSSSSSNSSSSVGAAVG
GEDGEEGGGSLDVSEVVQPLLSHLLRACVIAMENGESPVNPSLWSALALP
PHHVMSAGEMRVVCSIDFCARLILSVSSPGAKERMRDLFTHLLWENIGRS
DDMNAAMGKLLESGGGGEGGEEEEGVGGVVKPVFRSLMLVLQVGDSLQER
RIAVMLTTVLAALESHAERRSERTVERGLMMLMRVARGNALVRQWFHDGA
VVESVVASPERKGKSPKRTASFTSLLTFGAVGGGGGEKGKDGGRMTVDED
EDEEKRMVSRDQVQWAERWLLEHEGGRGNGLGIPLGKGGEFFNAAASASS
WIGGGGKGHQAVAANTVGGRGRGSMRTGALLQQRLLAGIRNLSRGQDMPL
NYDSDMDPMAVVGKCVKIKWSGNEHYTGRISHYSPRSGKHHVRYEDGDER
DYVLSERQHVIVDQSSPLSSFEQADD*

Synonyms

Publications