jgi.p|Nanoce1779_2|537539, gene_418 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|537539
Unique Namegene_418
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_3:1033863..1040259 +

Link to JBrowse

Properties
Property NameValue
TranscriptId537625
ProteinId537539
Product nameGlycoside hydrolase superfamily
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1033863..1040259 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008810cellulase activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL047ncniL047Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04050NO01G04050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|537539mRNA_418-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|537539mRNA_418Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|537539

>mRNA_418-protein ID=mRNA_418-protein|Name=jgi.p|Nanoce1779_2|537539|organism=Nannochloropsis oceanica|type=polypeptide|length=563bp
MVLKVISATYGHPEDATKSLDVTAQLAGAIIDTNAGGKLRVDVNAKTFGN
IDPAEGVVKVLKVTYSVAEGGAVEEVVTEEGAALELAGKAPPQGTLMILE
AKYGVLDDAEKCIDVTALVRDAAAAENNEKVAVKVDNNTMKRDPAPQKPK
QLKIFYQDGPSGPVREVLRNEGETASFAMGETTAPVHADKSSEVAAHEAA
TGTTVSGSPSGAAAIAWKSTDGQLLANGQTFRLKGVNWTGLETEARMLNG
LDSTTGAAYLDLLASYGFNGIKIPVSTTMALDMDGAPRKAPDDADLAGLS
AGDVLAKVVEMARQRGIHTVLEMGRIDETQPTPDLWYDGRHSVEDVQTAW
VCLLNKVPRVMGVNIKGSPHGCACWGDSNPSQDWNKAAEQIANFIIANVP
GYHGLFLVEGVQNVANVDADNKTIFPAWYGGNLQGVTKHPIRLQGDGSER
VVYATRAFGPSAFNQEYFNRGDFPQCMWQVWSDHFGFLKTTQGSAVVVSE
FGDSNESAKGRIWSNCIVDYLTQTGLTNAFYSSGSVMGGDFKSPDTQRLE
NLQRLQENPTKL*
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Synonyms
Publications