jgi.p|Nanoce1779_2|638532, gene_3959 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|638532
Unique Name	gene_3959
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_8:493027..499183 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	638618
ProteinId	638532
Product name	expressed protein
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:493027..499183 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL004	ncniL004	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G02540	NO10G02540	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|638532	mRNA_3959-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|638532	mRNA_3959	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|638532

>mRNA_3959-protein ID=mRNA_3959-protein|Name=jgi.p|Nanoce1779_2|638532|organism=Nannochloropsis oceanica|type=polypeptide|length=1893bp
MEAEGARPFGAWWQRRNRKKTLLALFVTVATIGLVAALVVAFKPDTSKAV
AGKSEVADVIVPETSSSSVAVTPEEPTDKVIVEEPKDKVVINEEPTNKTP
DPIDVSSLPDGPGGSLPGYKALNGVAETSSDLVAGILGEEAGAASEDFFE
TMLKDTSLVGSNACVPQSGMELREMVEDNTRCTIISLIPGKRYVVSLPDS
DDDITVSGRKVIIGNPIALPTIDGEDSVRIFHIVAGGNLDLQFVRTYRGS
GELIATIPVLRGGTALVELGGRFSAFGVIFTNAPPEGIPAFLIAPDISRA
VRVFGGQIFVMGGIVTITLSHFWVLQPGVLLREIYVIGADMLVVAGVAVL
SGVTFTNSQLFINGFGVGFELAVLGGVLICSGVTFTINFMAINASGAGIL
TFLGGGVGIFSGCVWNANLGVLSHFGSGIMIFEGGGVLVISGGVFAAHLG
VAIECGTGVMVSLGGGTMTMTGVTQVLSAGVDFYAGAGVLNWVGAGSAVM
VGFSQSRNVGVAGVYGIGGTIAVGAGNLILVGVANVDNYGVASVVLIGGN
YFLGAGILVDIGSPMAKNVGVLFAYFLGYDTFLGAGAIVVRDAPSAINTG
VAYIVQPVSRYFVNGEMIAANMKSFKKVGKGNATALVPRDKVGKDLFKTH
DFGFDGFMMDDDVELGTLMRKWRKKMRRGDDDWEWDDDWEWGDDDEEWGG
WGDDDEKWGSWGDDNTDTGGQGDTAKEIGERKDDDDDDELGAWGDDDEEV
GGWGDDDDELILKGWEDEEDAPDFDDDDVEDGDFEAIDDDDFEWEVEASA
DNNDDMEDDDFESINDDDFEWGDDDVVDVEASADNVVVFDDNDDVEDDDF
EAIDDDDFEWGDDDDVEENTFDDNFDADSAVEAIDDDEAIDDGGEEIDQG
AIDDDEETIDDGEAIDNDKEAIDDDEETIDDGEEAIDDDEEAIDYDEAID
DDEETVDDGGEEIDQGAIDDDEEAIDDGEAIDNDKEAIDDDEETIDDGEE
AIDDDEEAIDYDEAIDDDEETIDDGEAIDNDKEAIDDDEETIDDGEEAID
DDEEAIDYDEAIDDDEETIDDGEAIDNDKEAIDDDEETIDDGEEAIDDDE
EAIDYDEAIDDDEETVDDDEAIDDDEETVDDDEAIDDGGEEIDNEAIDDD
EETIDDGEAIDNDKEAIDDDEETIDDGEEAIDDDEEAIDYDEAIDGDDEA
IDDDEEAIDDGEEAIDDDEEAIDDEEAIDGDKEAIDDDEEAIDDDEEAID
DDEAIDGDDEAIDDDEEAIDDGEEAIDDDEEAIDDEEAIDGDEAAIDTNK
EAIDDDEEAINREGKAIEEAIDDDEEAIDDDEEAIDDDEEAIDDGEEAVD
DDEEAIDDDEEAIDGDKETIDDDEEAIDDDEEVIDDEEAIDDDEEVVGND
EKAIGDDEEAIDDDNEIEVHPHPADDDEEEDNLTETPASTPSPTPLEAAV
RKLHHSPFMRKFSRQAQEGEGEEEVFTTGAQPIAEEMADFEIAVADSQAA
EAFPASTFVVLDGENDFAEGTPNEFVQAVKESPLGEIGSNNPRPVYAAIN
GPVACNPCGFKGNMNKEIVGENAGECAMSEEEEADCTLEGVKVQGVDGKA
ASLPKWVLQAGDLFDASSTDIPMIDTQVTTATLKIGCSSGAAESVPERCV
LPSDLESVISKALGDDCARVNVEKMNSLKHPELGAFNQPNNKTFYAGSEL
TEMYDLSFTTHDKECAALTTDWVKNFKPSALKEALNSVIPADLTLDNSQA
DFITTHVVKGMSLSTATEGMMSSVVGTRAGNIVPSVLVSSADGQRLALPS
IQQGGAGKVVLSGFSTKAPVTLTVTEKCGLPSASDKPIGQIIPKQKGAVT
VPFEVPMDLAPDTYSIKATQYGVNFCTQPFDVAASESLSRKK*

Synonyms

Publications