jgi.p|Nanoce1779_2|638012, gene_3782 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|638012
Unique Namegene_3782
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_6:1242926..1246343 +

Link to JBrowse

Properties
Property NameValue
TranscriptId638098
ProteinId638012
Product nameProtein phosphatase 2C (PP2C)-like domain-containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1242926..1246343 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004741[pyruvate dehydrogenase (lipoamide)] phosphatase activity
GO:0019909[pyruvate dehydrogenase (lipoamide)] phosphatase regulator activity
GO:0003824catalytic activity
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL083ncniL083Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G04310NO08G04310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|638012mRNA_3782-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|638012mRNA_3782Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|638012

>mRNA_3782-protein ID=mRNA_3782-protein|Name=jgi.p|Nanoce1779_2|638012|organism=Nannochloropsis oceanica|type=polypeptide|length=553bp
MAGSSSRSSSRSSSSSSSSSSSSSSSSSSSSSSSSSTTNISLIIIISSSS
SSQQGRRRTEKPVAARLGRKNEKWRKARRNMREEARAREEEEAARGKGGR
EGGRKGGREGGREDVGIYIILDGHGGGRASEYMSQEMDIKVKTALREAFL
AVDNDFLSSLAEGVTLEQAKGFWNAGTCVVLALIMGNVLYVAHVGDCRAV
LAQRATPLPSRAPSREVSMAAVAAVAAVTADVVGLAVGRRGEEAAGAAAG
AVGLCGRGEGGKKGEGGGEGGGGGGGGGRGGGGGRGGGGEGGGGGEGRGG
GGGGGGGGGGGGGGGGGGGGGKLAAAAAAAAAAAAAAAVALALTDDHTCQ
NASEVKLVKQRTTDKHPIRKSAKDTRNAQTASGPGGIDRVAGSLAVTRAL
GNGYLKWPSLSFPPYQPYLPYITGEPVISSHVLSPSVDLFLVLASDGLWE
RLSNDDAVNIVHRWSHRQALQGPSPSLPHLIPTTSDPSSLPPSNPAAALV
EALMVRVAAVQHMGLRTLKRLPKGGQRRQIHDDVCVTVVQFDWRGGEGVQ
EG*
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Synonyms
Publications