jgi.p|Nanoce1779_2|582534, gene_3543 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582534
Unique Namegene_3543
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_6:612854..617244 -

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Properties
Property NameValue
TranscriptId582620
ProteinId582534
Product namealanyl-tRNA synthetase
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:612854..617244 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0043039tRNA aminoacylation
GO:0006412translation
GO:0006419alanyl-tRNA aminoacylation
Vocabulary: Molecular Function
TermDefinition
GO:0004813alanine-tRNA ligase activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL083ncniL083Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02150NO08G02150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582534mRNA_3543-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582534mRNA_3543Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|582534

>mRNA_3543-protein ID=mRNA_3543-protein|Name=jgi.p|Nanoce1779_2|582534|organism=Nannochloropsis oceanica|type=polypeptide|length=996bp
MSNDGTTEDVDDLRESVTDLRVETAWPARRVRQIFIDYFVQKRGHTYWSS
SPVVPHDDPTLLFTNAGMNQFKPLFLGTADPKMPLSKLNRAVNSQKCIRA
GGKHNDLEDVGKDTYHHTFFEMLGNWSFGSYFKEDAITWAWECLIDEFGL
DPTRLYATYFGGDDKQGLKPDEEAKQLWLKFLPANRVLPFGCKDNFWEMG
ETGPCGPCSEIHYDRLSGREVPELVNMDSPDLIEIWNIVFIQYNREEGGE
LRELPNKHVDTGMGFERLTSIMQNRPSNYDTDIFLPLFDAIQELTGAAPY
AGKLGKEDKESKDMAYRVVADHIRTLTFAISDGAVPSNDGRGYVLRRVLR
RAVRYGQKVLGAPPGFFSKLVHVVVNQMKEVFPDLEEKEKRVMEVLAEEE
RAFNRTLDQGEKHFKKVAEELLLSASGSGNVGKVKFPAKEAHHLYSTMGF
PIDLTELMAEEKGLTVDRAGFETLLAEDKRLSAMAAAAKKALGGKELVLE
AEQTAWLQSRGVEMTDSSLKYVWHHEPSAKVLALYKGKGSTEDGVGFVDE
VTAEDGIVAVILNTTSFYAEQGGQIYDTGVLTNLDGTDTLRVDSVQSYGG
YVLHIGPLESGALRVGDTATCMVDYVRRANIAPNHTMTHVLNHALRRVLM
KGVSDGSGLCDQKGSAVDEEKLRFDFAWNKALSTAELAEVETIVRERIKE
ELPVHSYIAPLEKALNIKALRQVFGERYPDPVRVLSVGQEVPPMLEDPAN
PAWEDKSVEFCGGTHLSNTRDAERFALIEETGIAKGIRRITAVTKDGAKA
AEALAEEFAGLLAVAEGKPEDALEAEVKMLSMRLGPLSISAVEKERFRTG
LEALVVRVKKYKKEKMAKNREKALGRVVEVATAAAAEGKGVVIERVDFGT
DGKISKECLDKAAQVHPTGCFLLVSADEDTGKFGVYSSVPVKEASFDPVA
WVAAAIEGAGGGRSGGKAPRGQGTGVGLENVEAALMAAKRFAGLS*
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Synonyms
Publications