jgi.p|Nanoce1779_2|584712, gene_3146 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584712
Unique Namegene_3146
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_7:769286..774359 +

Link to JBrowse

Properties
Property NameValue
TranscriptId584798
ProteinId584712
Product nameGryzun, putative trafficking through Golgi-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:769286..774359 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL092ncniL092Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03360NO05G03360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584712mRNA_3146-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584712mRNA_3146Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|584712

>mRNA_3146-protein ID=mRNA_3146-protein|Name=jgi.p|Nanoce1779_2|584712|organism=Nannochloropsis oceanica|type=polypeptide|length=1637bp
MLDSVLPEEVWKEAQPVLSIQGEVDWEPHIHDVFIRALHTVSLDKGSSIS
GPLGSTLTSGGLSSMAATISTPNKTPGLNGIVNVPFRFLSLAKTVVFPPK
KPTHPLKAADGRPLEGYTVGGLVKQNWIKKHVSQLPSAAILLAPFDNSWS
AAEWGRRELVLWQDMERLRQQVGPRDVRIFVVLIRRAGLPSGMSVGDAAE
DARESEERLVAFRRRTPPVFEAGKMVYVLQYPQDLQPSAPGLRRMYKHVR
DLSSGYYFLHGKRVKRWESALNRHAQLPLIVRYRFKQAFWYEFMGHAEKA
LKHFRKTFDALIELQAGWSNLNPSTFTEGPVVRGGAPALGLTTSTSPSAS
QASALQSSNAHVLGGWVSQIKAVAEVVAFKICYYSMREARHGEALRQFRL
LMSTWGWKKQQRVGRAVDGDAGTGRPLITMMPSSSFSSSFSSSSTSTSSP
LDGSCSGGLDTTPRGAAGAPSAAPPTEYNRLDFLSYKWTARQNQIFGDLL
QLFPCFPSPPSSISNSSSNSSSATAAATIMTYMDPDHYFFNAALEIAKQR
EMGLFLQANPRPESKLMVRFESHMGSGAGPLLGLPLYMGGRPRLVDSNIE
NGIGEGDICDLVQLILEREEAAGGEVRREEVLRLLVAAVSVYDPSRPRRP
RFKGMQHVRLADELMEAGREREAWGHYCTALKRYERYEKLGLEGGGCGGS
VGWSLPTVVMLGRMRVCALRLGGVEKNLGQYLDLTLKLLSQDLRGMVGEE
TRKLFWEEVLFLVFGIQREERGQQQQQASSLWSSIFTFHEQQQRQPPTNF
TSSVSKLGPVTYDDSGEETASSVSTSLEPMLTLLTDTVQVDLNCGWRQLV
SFSLCFPDATAAMGCSCLVLLRVVSHLPLPLHVSEMLLRFNKPYIGAVRI
VEASSLPASTASALDRIKQSFTAAPALVAPPLQPAVKVDDQNTAHVTLSL
LLQPDKPLDIPHTLSLPMGEAVEVGDLLHAVQLQLLINAPNSTSPSFSSL
FSPFPPLRRSLCLNLPSGVAYTDGLGVTRANVFKGPVSAAAATEVYPPSS
PATHLSSLPVPLQASLRGFPALEVTRPVAHASLALRTQKEAENRLVTSLV
GHLHCLWLKVESNEDTLSNPVLHVRSDPPARSSQLEDAFFFENNSNSSIS
RRGPTPLKLGKDMQPEAALPVLLPLAPLSSSSTTDAAVLSPQSSVLVPVW
VRPKQEGRVKINIVLVYHATASAAVGETDRREDIYSNRLVSYEYVFDLES
YAPFVTAFDVASPCPALPPAPSSKIARALQGDTDDKSTADAGAAAAHIFY
TGEQVMMRLSIKALHPSSWGESQGGGRPRIEQVVWHPVESGNWAPDKVAA
ISDKRKEKRNENGEGRVLYSFAQDRHGRRGGGEHDERGMQPHDVLTLTFP
FLCPETESSQALSLGHMRLYWRVVSTSSSSFPSSSFSEKPTAATTASPSS
SSWLACTEAECPIVGVVAPDIIVHLHAPSDVMLGQAFKLRWTLRNLTEKV
LTIRVVLKEGGGGNSGPSTEEALVWSGARESVVQILPHESIHLRYRVVAV
LTGPIALPRLVLTQMPDAAAVSSSKKEEGGTSLPLRVAYRYVDNVLSNST
LSLSTPRSAENRGSVVGGQPSDTRHLFVIPEAALNQ*
back to top
Synonyms
Publications