jgi.p|Nanoce1779_2|552404, gene_2575 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|552404
Unique Namegene_2575
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_5:683824..691966 -

Link to JBrowse

Properties
Property NameValue
TranscriptId552490
ProteinId552404
Product nameexpressed protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:683824..691966 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL072ncniL072Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region
ncniL071ncniL071Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02490NO07G02490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552404mRNA_2575-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552404mRNA_2575Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|552404

>mRNA_2575-protein ID=mRNA_2575-protein|Name=jgi.p|Nanoce1779_2|552404|organism=Nannochloropsis oceanica|type=polypeptide|length=1445bp
MTRSRHPSAPIPPTLSFLRTHLSPIYSQTATAGHRVVVITMTAGAVFPSL
ARRHGSVMSRRRFLSVLVLLGLLFGQTAHAQEAESALDDVDITVFTTAVD
DDDQSSPPPANPGPAVNYNVTLAPPDATFLAELFSADVLTELPDNSDVKM
VTDFQWKRFLNRSDSIPFFLCATNGHRGYQEMMTAFNHTNALPLFANASV
SCQLIHASAGTVLNVTTRLPQIVNGGPIPSVVKISSDLRKSVDTGIFFNA
TSPRLRLVMSPGMEQDEKALRTVLYRIVRRLRTGEFLNVVEEDFEWAAVG
TAADPSTAARRQVLRRRVRQRQRERLLMMQTDDNEVDDKSLNRFTEDQPR
RVNGAQTWADYVDPVLDGKFQCSFEQVAASIQYPYLRLSGFDKIVNAASE
NWTLQYSNSTHQGKSACLMSLLAFVSSDPAVLFIEEFKNIEMYNAAAAYI
SQGGSDGIYDEDKSTFPYYSVGLDGKGQVLQVVDTGLDQNSCFFSDSSGP
VAITTISAAAFDTKKRKVIQYVQWADDTDVIDGHGTHVAGSAVGESVDPN
FDYDTYKGAAPGAKVAFFDVGFDTGSLSVPANFATRLFPPGYKAGARIFS
NSWGTPAAKSYTTSDTEIDKFMHDNDDALIFVSGGNSGQAGLGSVSSPAL
SKNVMSVGASLNERDASFNRDHVAYFSSLGPTLDGRIKPDVLAPGRRVVS
AAAGSNCGVIRRQGTSMSTPIAAGSATLVRQYFMEGYYPRGIRTATDAFV
PTGALVKAMLINSAVPMKAVRFANNSLMQLGLPPDVYQGHGRIKLNEVLR
VQSLGSRTTSNLFVVNNATIKEAEKHVYKLSVPSDSSSPIKVTLVWIEPP
TTASSASIVLHDLDLMVYSQLNKKAFYPNGLSKKDTVNTVEKVVIYTPTA
GDTLTVTVTGTSIATRPWQKYALVASGDFVTGAWYCQFPQAGRAGEEFTT
ENCAKTCDNSGNFKHPVCCNAAAGDVCDLEELSKALASSFQCDAATQPVE
CLPSPGRESTPAPTPSLGTWYCQFPRLGRSNDASTISNCNVKCDDSGVRL
NPVCCDPATAGNVCNEEEQAAAVASGLKCDPAIRPVDCSRGANTPAPTSV
SAKGTWYCQFPRLGRRNDASTISNCNVKCDDSGVRLNPVCCDPATAGNVC
NEEEQAAAVASGLKCDPAIRPVDCSRGANTPAPTSVSAKGTWYCQFPRLG
RRNDASTISNCNVKCDDSGVRLNPVCCDPATAGNVCNEEEQAAAVASGLK
CDPAIRPVDCSRGANTPAPTSVSAKGAWYCQFPRLGRRNDASTISNCNVK
CDDSGVRLNPVCCDPATAGNVCNEEEQAAAVASGLKCDPAIRPVDCSRGA
NTPAPTSVPPRVPTKKPVAPIAGAWYCQYPRETRSNEAYTLANCRAKCDT
SGLLKNPICCLEAEAGGVCNGIEYNSAQLAGVQCDPSTMPVCEA*
back to top
Synonyms
Publications