jgi.p|Nanoce1779_2|627673, gene_164 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|627673
Unique Namegene_164
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_3:418033..420953 -

Link to JBrowse

Properties
Property NameValue
TranscriptId627759
ProteinId627673
Product namepre-mRNA splicing factor component-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:418033..420953 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL047ncniL047Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01840NO01G01840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627673mRNA_164-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627673mRNA_164Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|627673

>mRNA_164-protein ID=mRNA_164-protein|Name=jgi.p|Nanoce1779_2|627673|organism=Nannochloropsis oceanica|type=polypeptide|length=815bp
MGIRIMVKGGVWKNSEDEILKAAVMKYGLNQWPRVASLLNRKSAAQCKGR
WYEWLDPAIKKTEWTREEEEKLLHLAKILPAQWRTIAPIVGRTPAQCLEH
YERLLDAAQQRSGDMESGEMKDDPRKLRPGEIDPAPETKPARPDPIDMDE
DEKEMLSEARARLANTKGKKAKRKAREKMLMEAKRLASLQKRRELKAAGL
ELKMREKKRKYIDYGREIPFQRTAPAGFYATGDEKLEGQKQALDPRFEAL
RVDKMEAERRDEEENRMRNQDKKRHKKLVQESLPQMVQALNQLNDPASIR
RRVPLSLPAPQVTDSDLEEIVKLGGAHGAGVQGGEGVGATAGLLGDYRER
NTPLATPMRTPRTAPGQDVIMQEARNLLAMRAAETPLKGGEAVMGGLEEG
TGFEASTMRSRAGGMTPMRDELGLNQGGGGSGMEQQQQLMVMGEKRRQKM
LRAQLAEGLQGLPEPQYNYEISLPELEEDGEGGKEDGMSVEEDAADRDAR
EAGEKRAKEEAELARRSTVLKRGLPRPIVVDPQVFQSRARATAAAAAEGD
EKAAADALVQKELYAMLVHDQAKYPFVHVALGKKKGGKSSGSSGTSNGGG
VDLPALPSKLLEQARALVEEEVAASRKNKNEMVNGGDGGREGEREDDDPV
VVEEAWLKAYHDLAYFPNRQTFGRLTGANKQDRLAALIHQFDSLQAQGVK
EGKKAGKLEARLNLATGGYGKRASNLVQGVSDVLNQIDEMRLEVGCFRRL
AAIEELALRTRLAKVQGEVEGLEGREEQLQVSYVELLDERDGLFALVGGR
GEEGINGREERMEE*
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Synonyms
Publications