jgi.p|Nanoce1779_2|572658, gene_1547 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572658
Unique Namegene_1547
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_1:924652..929687 -

Link to JBrowse

Properties
Property NameValue
TranscriptId572744
ProteinId572658
Product nametRNA synthetases class I (M)-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:924652..929687 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004825methionine-tRNA ligase activity
GO:0000166nucleotide binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006431methionyl-tRNA aminoacylation
GO:0006412translation
GO:0006418tRNA aminoacylation for protein translation
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL000ncniL000Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03530NO03G03530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572658mRNA_1547-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572658mRNA_1547Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|572658

>mRNA_1547-protein ID=mRNA_1547-protein|Name=jgi.p|Nanoce1779_2|572658|organism=Nannochloropsis oceanica|type=polypeptide|length=627bp
MQDRRRHQLGFSTFRCSSFRSTVVIIMLAALSLVKPMTAWRRKAVGFVRP
DAPHLRPHISSSSFPRRALSSSTPLRSAAAGAGDKRKGYYITTPIYYVND
KPHIGHAYTTLACDVIARFMRLDGRDVFFLTGTDEHGQKVEQSAAKAGKT
PQDFVDEVSQNFMSLAKTMDFTNDVFIRTTQHDHKAAVQALWKQLEDAGQ
IYLGAYEGWYSVRDEAYYTESELVDGKAPTGAEVVWVVKEPSYFFKLSAW
QEPLLKFYEENPGFIAPESRRNEVISFVKGGLKDLSISRTTFKWGVPVPG
DADHVMYVWMDALTNYISAIGYPDAGGKYQDFWPADLHVVGKDILRFHTV
YWPAFLLAAGLAPPKKVFAHGWWTKDKQKISKSVGNVIDPVGLVETFGLD
STRYFLTSEVPFGNDGDFSNDAFVRRVNNQLANELGNLFQRSLAFISKYC
EGKVPNPASAMTDADVALLKSARGLLGTARPLVEEQQALHKYAEALNQVV
NEGNRYFDEQAPWALKKTDTDRMATVLYITIEALRSVAIMYQPIIPSSAS
KLLDLLAVPLDQRTFAHIGAAAALVPGTPLPTPEGVFPRVEDPAVAATAA
AAPPKPPKQPKKPKAPKASKAEQQQA*
back to top
Synonyms
Publications