jgi.p|Nanoce1779_2|572317, gene_1478 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572317
Unique Namegene_1478
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_1:728846..733926 +

Link to JBrowse

Properties
Property NameValue
TranscriptId572403
ProteinId572317
Product nameexpressed protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:728846..733926 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL000ncniL000Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02860NO03G02860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572317mRNA_1478-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572317mRNA_1478Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|572317

>mRNA_1478-protein ID=mRNA_1478-protein|Name=jgi.p|Nanoce1779_2|572317|organism=Nannochloropsis oceanica|type=polypeptide|length=1518bp
MDYKGRDRGRSSSREDARFSATRTAWSSAVPPPPSRLSLRLEDAGDRSSS
SSSVSSSNYPNPQAARRFSMGSEGPSWHRDDSPLRNPRSRTSEDPFFGGS
AEADRMQRMKVDRRRMNEAEAEGERHSSLAQRDGGKDRWRPPESWESEPQ
NHASSSSAHPSLLQGMGRSSLPSRTTNVSAAAESWLRSDSTSSGSHQHPH
PHQHQHQHHERKLQQPQQQVKEVFIQPLLCRPLDAGSGTRQAPWSFNDVA
SSLSLLALPAGGAASATASSILTFGQIVDSATSFHHRRLLTEEMKVSQSS
VFQAQREARREAASGAALSISASHEGMNGGVSDEHLLPRATSFQSLFRGY
GVTGGEGLLSASTSGSVQPLEPRLQRSLSEAPSGRLRLGWGQGLARRAIS
TQEQPSPRVVPPNLSKVGDRLDRLDSSGKSIDNTLPMERAREEVVVEPTE
DVAGAVDLTNGKSSVLKQRVVSSEKRQRRQERSCDDKRSEQRAGMRRRLR
RMLLAFVRHLWRESATRGVERASTAASAFASVTPTAKTPTAATGTSSAPM
SGKKDPLTERERGAGEAVASPKMRRERSSEATWQGEEGTRTLKRQKSALS
VHQEAAAAAKLAEKKAARAKLEKYRTLSCSSGFPLCGLLPMESMRRAVKA
TACVREKQPGTEAETTGMGTEVEAELVRLPSREDILAVLESLNSKVEHLQ
EEVATVEEEVSNATVAAASYRAPWWSNTYASVIRLRREAAEQLDRRKVEE
DQRQEQQQQLLIREGAHMLCPVSGDDAAVTALAALNAPVSIADAVQGGSV
EADGNKRSEREALTKRELIKSAVQEKKAQIRRYIEQLADKYLDINETWKR
KQPGADDDEEHGHFLQDSMRTTRTFAASQRSSYPSGGGGDRTSSRSGGLS
SSRGGDFAASEYDVALMARGIEEKEKMKLRMDLGGATVPAMLLVPELRGR
FEFLDTSNALLTTDGEPMRCAGRGLREKCSGACNCPLGVERQSRYVNPWS
DMEKCIFLDKFLQYPKNFRKIASFLRRKSTHDAIEFYYDSKQCINYKALL
KENEARRRGTEHELVWLKQAARQVGATVDLRYDSNDREIVRLYPPANDYL
YTTFHKHPGSRPFHHTASQRLQHGQSRGGRVRATSPSSSSYAFSAQSQAQ
VFGGEATSSTESSSTAYGTASATKSSFGFDVEMTSAVSRTSSTNSSHAKD
LASCFPAGPRRGGEIMGLPASSPRAGGSRQMEEEDSEGKKVMTKWTEEEK
QKAIQLLEVYGKQWALISGEMGGTKKPEQIKNFFSNYKKKYRLDERLPPS
LPGQRRREPKRAKSPPPPTMPMPPLLSQQEAVPVRSSAMHSQVMAMLGAP
GEAISLPRYVVHVAPGDDAQAAIMVHLGSHQHQRPYQSQQQQWEQQHFQS
QQVAQQQEQQQTYHLQHSSTSITAQLPEQQQQQQQQQYLNHYHHDIPTDG
VPQQQQQQQQSLPPGTVQEIQQEQARGQFVNVEYPQGIHEAVTAVMDVAA
AQHAGNGGNGGGKDKTS*
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Synonyms
Publications