jgi.p|Nanoce1779_2|379298, gene_10606 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|379298
Unique Namegene_10606
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_62:1042..3435 +

Link to JBrowse

Properties
Property NameValue
TranscriptId379384
ProteinId379298
Product nameAcyl-CoA dehydrogenase/oxidase C-terminal
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:1042..3435 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors
GO:0003997acyl-CoA oxidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005777peroxisome
Vocabulary: Biological Process
TermDefinition
GO:0006635fatty acid beta-oxidation
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL086ncniL086Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00240NO26G00240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|379298mRNA_10606-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|379298mRNA_10606Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|379298

>mRNA_10606-protein ID=mRNA_10606-protein|Name=jgi.p|Nanoce1779_2|379298|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MAYLPCHRGLQDFAVMCTWEGDNTVMALQTARYLVRSYVKAKQGGETLAG
SVSYLQASHPPAWRARTAHDLLDMDVQQEAWRALLAAKVSAAAERVLARQ
TALAGNEAQAFTDNQVELFHCAKTHVYYNVAARFMEAVVEAEATHPALAP
LLARLSHLFSLSNLLEESSGLLESGFAMPGQLQLAREAVSSLLLALRPDA
VPLVDAFNYSDAVLGSYLGTASGDIYTGYLHQVQRLVPENKVSVAPYILT
QVKPLMQGADLISTDEDEE*
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Synonyms
Publications