jgi.p|Nanoce1779_2|627406, gene_1009 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|627406
Unique Namegene_1009
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_2:1003491..1009175 -

Link to JBrowse

Properties
Property NameValue
TranscriptId627492
ProteinId627406
Product nameexpressed protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1003491..1009175 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0004386helicase activity
GO:0003682chromatin binding
GO:0003677DNA binding
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0000785chromatin
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006333chromatin assembly or disassembly
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL032ncniL032Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04190NO02G04190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627406mRNA_1009-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627406mRNA_1009Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|627406

>mRNA_1009-protein ID=mRNA_1009-protein|Name=jgi.p|Nanoce1779_2|627406|organism=Nannochloropsis oceanica|type=polypeptide|length=1761bp
MPKAAADESSEDELWIYDEEDEDEAAEERDGEGEETEEDEECNKCHDFGE
LILCDYCPKAYHAKCAGLQEPPHGNAIFTCEDCGIDICDACKAREATIRC
RYCRRAYHGKCVHRVPSLNDTWLCGACIKDIATHHGVEKILSVRPYRKLA
PAEEAKRLEAWAALAVQEKAAAAAATTTTGTVKTRTAPAAAASVSISTSS
SSGDGSTPSKATKRKIKQVAERKVTEAEYFVRWVGKAFWHCSWVPESFLA
ATNKAKLRNFKLRQSTSTHAVHVPQEAAETEEEEVVESAWRQVDRILDER
MSKSLDGRVKVKECLVKWQGLEYDQCTWEVESDLVREGFESALRHFAERD
TDWVRPLLSMDDPASFRSTSTSSASTSARISGYKPISVQPGCFKGGTWHD
YQVEGINFLRNSWYARNNVILADEMGLGKTIQTLGFLRAIATEKVMGGGF
FLPFLVVCPLAVVDNWERECKTWCPELDVVVYKGSQVSREMIQRYEVRPA
SSSSSSARNSNGNNGGASKARKRRKLSGGEEEKGNGEGEEKEGEASGVAM
DMDVSGTTVEEGRGSSNSSSSSLKRRRCGNSEEGKMNIYFHVLITSFEYA
WKDAGFFKKVTWETVVVDEGHRLKGGATGKLYHALKEMKVGHRVLLTGTP
LQNSIEELFNLLHFLQPVKFSDIEVFKGDFASMDKEEQLGKLHALIAPHM
LRRMKKDVNLVIPEKHELIVRVELTQTQKTYYRLILTQNFEVLRKKFKAA
SSIYNMIMQLKKVCNHPFLMREEDLCYSMNENYEKRAQALLTCSGKLELL
DRMLLRLKEGGHRVLLFSQMTTMLDLLEEHLMNRGWRYQRLDGSTKTSDR
QARIDAYNRVSKAGGAGGRAGGGGREEDEYFIFLLSTRAGGLGINLTSAD
TVIIYDLDWNPHNDLQALARAHRIGQTRKVMVYRFLTRNTVEERILQLAK
KKLLLEHVVVGEAGRGRKLTQDELDDVLKYGAEELFADEEEEEGKEGEGG
RGAAVAAGAAGAETRGEEKEAVNAKKWGDGGTRGKTMRILWDDEAVERLL
DRNIVEEGAAGLESEAEVGEGGAEGEKRTGKGLSDLFQSFKVAKFASVED
AEEEAAAAVAAVAAVAADAAGAEEFERLRREKAEALLKETLPENTTKTWQ
ELLEARHESRHVKEMARLGKGKRERKEAQRREGTFSGPLSDFLSGSDGGG
EEGEEEEEGDEDWEDGGEEDMEDEEDFDNVGSRSKRRSTAAATAQVGVPR
VQVAGFGYVQRQAVRMYLMQFGLTGGKKDGKKGRKGGEFKIFYDLLQKHA
RGKLAERSEEEVRAYLQMLLGGGGAAAGGAATATAGTTAAVGTCYMQRDL
LRRVSLLRLIEDKVLEYQNREPDSFFIDDGKQTGWSKACSITTKTFKLNW
GRANDLMLLELTLRHGYGKWRSFLKDATFVASLPPTALTVAGQQQQQQQR
LSTSPVGSGEGDEFGVSVQGNGMPKAIAALAGAGIGAGAAVSGSVNKSHR
RKGYSDGQEKQLLSIVQKRMKLMSQALFVENQRLQRKIEAITHIQSRVSV
LIAQKTTADEVLPPPALAHLLEQRRQLQLKVQEVFEELRAKARLETSIKV
IELNKRLEGLNASVHDSLRRNQELLSALNNTRLQMVVGQVITERLTRQTK
DFEDINRDIKEGIQATADCLQEMERVIEGAYTEAVTYVPVTVAPAPRATA
PKEDAAMVDLCDSDNEEVGKESSTSIESREEKSNGDSHVTDGGNGVAPMV
EGAEGEGARP*
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Synonyms
Publications