MSH5, gene8596 (gene) Nannochloropsis gaditana

Overview
NameMSH5
Unique Namegene8596
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:341031..344495 +

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100051g20
Gene biotypeprotein_coding
GeneMSH5
GbkeyGene
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:341031..344495 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL070ngnoL070Nannochloropsis gaditana (N. gaditana B-31)syntenic_region
ngnoL069ngnoL069Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01780NO13G01780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna8866rna8866-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna8866rna8866Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna8866

>rna8866-protein ID=rna8866-protein|Name=rna8866|organism=Nannochloropsis gaditana|type=polypeptide|length=936bp
MPWKQQENASGIESYEGKTMALARKGTKLGYACFDEDKSTIWVDEILVST
DIRETVQALKMHLGPTSFLIDAHLLADEGFCKLLGSSVSEDRPQFHVRVA
KARDWDTRRAVSQLCHCLDVRQLAKGPHSRNRGHAIYLRNERLATSSEAA
SSPFFMDDKGSGQGRDEGLDPRRNYDRLSCVIDFMSENLLVKALGALLVH
LQCTTFQLEIGGRVTVQTLERFDLGSFVHLDSNALTSLQIFHEEKHPNVI
SGRGKAKEGFSLFALLDQTHSLPGRKCLKEWMLRPLRSVRGIRERQNMVE
LLLHPEAMEVVTNAGMLLGKVGDIQRILTRMRRAGSTVNDWLTLANTAEH
ILLLQSCLAVLAHLTARLSSASDKGPTTAGEEEHRTNEGSYSSAMAMLQG
FLDRISRQAVGRVSEALTKVLDLEITRESKSMAVRLGCDEELDRLRGDYD
GLEEFLSEEARGVLAEQSSQLLSKISVQFLPQVGFLVIVQANERIAVEND
PRFRFVFAEGDALYYKTPRMDVLDDSIGDLSAAIQDREGLLLRQLAEEIL
KEETALAEAVRACAELDVLMAFAQLAGGLAWVRPMVTEERVVVVKDGRHP
LQELTVETFIPNDVFLMGGDGNAVHRDGGDEKHAQKQGLEHCNQHGTRGV
AVVTGPNFSGKSVYIKMVGVLVYLAHLGCFLPCRQALIGVVDSIRTRIAS
AETVTVQQSSFTIDCSQMNAVFQNASPSSLVLVDEFGKGSAETDGLALLV
ACLSRLQRLGARALVTTHFLELFQRKGLLSPQLANDISYRMDIFVPPLPP
PTSPSVSSSPATAASTPSAANIHTIVPLFKLTKGVASSSDGFSCAALAGL
APSLIKRAEQIAKYHVEGSMKIEPLARPIAFRGGSENEKEEKNQGREVLR
FNLQAQEALELFLGVEDWLLKKDQDLQGFIELLEQV
back to top
Synonyms
Publications