Naga_100116g4, gene5599 (gene) Nannochloropsis gaditana

Overview
NameNaga_100116g4
Unique Namegene5599
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:865985..869473 +

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100116g4
Gene biotypeprotein_coding
GbkeyGene
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:865985..869473 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
PXD0084992019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009056catabolic process
GO:0009058biosynthetic process
GO:0019538protein metabolic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700DNA-binding transcription factor activity
GO:0000166nucleotide binding
GO:0016787hydrolase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005737cytoplasm
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL018ngnoL018Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03130NO11G03130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna5797rna5797-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide
rna5798rna5798-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide
rna5799rna5799-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna5797rna5797Nannochloropsis gaditana (N. gaditana B-31)mRNA
rna5798rna5798Nannochloropsis gaditana (N. gaditana B-31)mRNA
rna5799rna5799Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna5797

>rna5797-protein ID=rna5797-protein|Name=rna5797|organism=Nannochloropsis gaditana|type=polypeptide|length=410bp
MASVAVATRTPGLMDMDVDSGAGKEEEQQEEDLYTRLKQLQRQLEFVDIQ
EEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTA
GSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEK
PDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPG
TGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSP
SIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIM
ATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVD
LEDYVNRPEKISAADVAAIAQEAGLQAVRKNRYVILARDFDEAYKKHVTK
ADKEHWFYSM
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protein sequence of rna5798

>rna5798-protein ID=rna5798-protein|Name=rna5798|organism=Nannochloropsis gaditana|type=polypeptide|length=401bp
MASVAVATRTPGLMDMDVDSGAGKQEEEQQEEDLYTRLKQLQRQLEFVDI
QEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGST
AGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQE
KPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPP
GTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENS
PSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVI
MATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDV
DLEDYVNRPEKISAADVAAIAQVSTKNKREKAIKETILGDMEACGPGFSP
K
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protein sequence of rna5799

>rna5799-protein ID=rna5799-protein|Name=rna5799|organism=Nannochloropsis gaditana|type=polypeptide|length=437bp
MASVAVATRTPGLMDMDVDSGAGKEEEQQEEDLYTRLKQLQRQLEFVDIQ
EEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTA
GSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEK
PDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPG
TGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSP
SIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIM
ATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVD
LEDYVNRPEKISAADVAAIAQEAGLQAVRKNRYVILARDFDEAYKKHVTK
ADKEHWFYSMTRCSRHLSPPRVHATNGVLPESTLTLE
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Synonyms
Publications