Naga_100125g7, gene2895 (gene) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	Naga_100125g7
Unique Name	gene2895
Type	gene
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002460.1:486097..491148 -

Link to JBrowse

Properties


Property Name	Value
Locus tag	Naga_100125g7
Gene biotype	protein_coding
Gbkey	Gene

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:486097..491148 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
SRP229557	2021-06-30
GO annotation for N. gaditana B31	2020-04-08
PRJNA174770	2019-07-03
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ngnoL127	ngnoL127	Nannochloropsis gaditana (N. gaditana B-31)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO09G01200	NO09G01200	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
rna3016	rna3016-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
rna3016	rna3016	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of rna3016

>rna3016-protein ID=rna3016-protein|Name=rna3016|organism=Nannochloropsis gaditana|type=polypeptide|length=1403bp
MWRRRASTSDTVSKAGSPSDDGGPKHDDITRQAMSPASLNRYLCQRGLSG
TQNRKMALLKGLMPMVASTFLVFILLYCRRANPATLSPAQGQQQKASPSI
FRTLQSLSMYPNLFFWNMKQAAEEVALQGALTFNVAPARVDSLFDNLDPL
SDAMGVTADVEIFDDAWEGFWLRNGKTCLAHDTRRLMEAVNSTACDVVVL
VAGHVYNLDRMMHVYKPTTVIGNPADRPVINAAEAERAFLVHSGATFDVR
HILFYEGDGDLIRNEIRTRFGGAIYMSIGTRLFAFDCLFTIQPVRESFIN
SAPEFIFGGDILMEGGVMTLVGCSFFAVVPGFINSVSTELGGAVLILSGA
ATLTLVNFMTTQIFAYNAGGGMHLTVLGGSLAMTACTHTANLVFAGQGLV
GRNIFLGGGVGVFTSIAVTDTMAFLSFWGAGFSIMIGSGLGIFTGSAITL
NAAFAQLAGVGVAFGVGAGMALFYGTAFAKNLGIAVWHSTGVFIFCGAGR
IALVGCVFGHQNAIASWQLLGGAVYLGTGQAVYVGCAWARSLGLDFFAGL
GGDLYLGAGQIVLVEGVFTSNTGITVFLGQGTELFVAAGSAFVKNVNFSA
NAGIHYLREGTFSFVVGGRKCEVTTEESTGSFNYREKGYGLCFKGFDGSE
RSDPEGSVALGIDDGNVVPTLVVEKLHAHQQLGGWHGLTPLYTPPQVMYV
GSNITSCALCGLENVEVRGPGMEGCPAGTEEACPAESPVSSGRTSALMEP
ATAAADVASGSSATPFKKARKFFGLGSRLRKLITGEKEDDPIRSTGTDEI
KSSHHYDPDALLPDSYVVIADLMLECQTDGVEAGCGILLETLQEIVESSW
LKGLEDEARVHVAKFKSSDSLREMLGIPSMDGVAAPSSTDTNIPQSKRSS
SGNLSEPSCNGHEAFVAYAHTSDKSTYESLKASLSSATESATIGSGSGST
LSADLALLLSSQQPTICTVNFTLQDSFMVPAPLAKFSSTSTGSSSSATAS
NRAKTAFQGLTLPRVWINITSPVITPRKTYDIVISEFDDKDIVGLQLMAK
PSKDKKKSLFFSSTPRLLHTFQPFDSDKHNQTWAWRVSPLVFQGMASGPY
FLKAFDVLEPKRFVLSQAFQVERSAAEPRQGAGKGAASSLFPMKAERILH
RLDPQNSPTDAHLREDPEPKTDRETPVLESDSRQNHRPRQLLDEDSSDRD
LLSMMATLLALPEDTSLMDELWKALLAFPASQTALADEGLARKLLERAPV
LQTAPSVVALDADDGAGWRDPGQVQAALGKAIADFVDLSVSVLRQQRGRG
DGPKGMGKADVFDGREDPNDHWPARILGGLTPEEEALAARVGRDGDLEAM
GELMDTQAAHRFGGMTMARLKAMELGDEFKGGLASEIFRDLIDDPEIWQE
LEA

Synonyms

Publications