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Properties
| Property Name | Value |
|---|
| Description | RNA recognition motif domain protein |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr30 | genome | chr30:497542..501751 + |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO30G01340 vs. NCBI_GenBank
Match: EWM20172.1 (RNA recognition motif domain protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 159.1 bits (401), Expect = 7.300e-35 Identity = 110/247 (44.53%), Postives = 145/247 (58.70%), Query Frame = 0
Query: 760 EAALRKGRLEGMGEGGMEGGKAAMIFPFNTKFVAAG--------KQGEEGLPSAMLTQQQKPTQQPPQQKEKDWHPTTIFLTGLLHWTGNETDLRSLFEAHIPGSEVQAVTIARDKRSGQRKGTVLVQFTQPEPVAAALKMQQGLGKLIGVDEVVKVRRSRFAAELEEDKDVKGGREGRGGVERLPLMAASTASLTAFAPRVLQRKAGKSRMG-----------ARGEGGDGGDKRGDLTQEDFKKM 988
EAA+++GRLEG+G EG A I PFN KF G + EE A +++ P + ++++K +HPTTIFLTGLL+W G DLR+LFE H+P S+VQAV IA DK +G+RKGT LVQFT+P PVA+ALK+ + +GKL+ + EVVKVR+SRF ++E + R ER P A FAPRVLQRK G+ +G A+ + G TQEDFKKM
Sbjct: 1 EAAVKEGRLEGVGVEKTEG--IARILPFNIKFKNGGLSPKANDQEDVEETGGRAAHCEKELPQGKVQEEEKKTFHPTTIFLTGLLNWNGGIADLRALFEEHVPESKVQAVNIAMDKCTGKRKGTALVQFTEPGPVASALKL-RNIGKLLNLHEVVKVRQSRFPVQVEGSNFPDKRDDPR--EERNPSRAR-----MFFAPRVLQRKQGRLSIGQEVGHKEKSKEAQQTPPERFQTSGTYTQEDFKKM 237
BLAST of NO30G01340 vs. NCBI_GenBank
Match: EWM20141.1 (RNA recognition motif-containing protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 99.4 bits (246), Expect = 6.800e-17 Identity = 52/107 (48.60%), Postives = 69/107 (64.49%), Query Frame = 0
Query: 6 AVGGLHVLEGHKVWEAYRGFEVGLLSKIRAAAXXXXDDVGREERQGREE---------EARDRVIALFERQAAVPLVEGCKTLVGEWEAFEAGEREEIEKRQKIRNK 104
A G+HVLEGHK+WEAYR FE+G+L + A + G R+GR + EAR+RV+ LFERQAAVPL+EGC+ L EW+AF ER E+E+ ++ R K
Sbjct: 250 AAAGMHVLEGHKLWEAYRTFEMGVLRRAGDAQWAMEKESGEGGRRGRSKEDGGEERRAEARERVVRLFERQAAVPLLEGCRVLEAEWDAFVGAERAEMERWERERKK 356
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO30G01340 ID=NO30G01340|Name=NO30G01340|organism=Nannochloropsis oceanica|type=gene|length=4210bp
ACAGTCTAGTCATGGCAGGTCGGCGGATTGAGGCGATGAGCTCCGACGAG
GAGGACGAAGGCAACGGCAACAACGCGAAGATAGAAGAGGATGATGCCGC
TTCCGTCTCGTCCTCCTCCTCCTCCTCATCATCATGCAGTAGTAGCAGCA
GCCGCAGCAGTGATGGTGCTGTGAATTTAATGGACATTGGCGAGGTGGAG
GTCGAAGCGCTGGAGGAGGAAGAAGAAGGGGTGATGCTGGAGGAGGGTGT
GCACGAAGAGGAGGCCCTAGCCCTCGTCGCGGGTGCCTTAGAGACCCTTA
CTGCACCTCCTCTTCCGCCCTCAAACAAGCATAAATTCGACCACCACCCG
GCCACCATGCAGAAACGGCAACATCCAACCTACGAAGCCTACACTGCCTG
CGTAGAGACCCTGCGAGGGGTCGCTCACTCCCTAGCAGGCAAGCCAGTCT
GTGCCGACGTTATAACCAATCTCCGCGCCACGAGGGAAGCGTTTTCTGCT
GCCTTTGCCCTGCCTGCGGAGGCCTGGTTGGAATGGATCAGGGACGAGGC
GACTCTACCAGGGGCGGGGGGAGGGAAGGAGGGAAGGAGGGTTTTGGAAG
AAAAGGCCCTGGTGGATGTGCCGGCATCGGTCACGTTGAGGTTGGTTCAT
TTGGCTCTCATAATGGATGAGGAGAAGGAGGGGGGGGACGAGGGGGAAAA
AACGCAGAGGGAAGGAGGGAAAGAGGGACGGGTGAGAAAGGCATGCGAGG
AGGCGGTGCGGTGGGGGGGCTGCACGTCTTGGAGGGCCACAAGGTGTGGG
AGGCGTACAGGGGCTTCGAGGTGGGACTTTTGAGCAAGATCCGAGCAGCA
GCAGCAGCAGCGGCAGATGACGTTGGTAGGGAGGAGAGGCAAGGGAGAGA
GGAAGAGGCGAGGGACCGGGTGATTGCTCTGTTCGAGCGGCAGGCGGCCG
TGCCGTTGGTTGAGGGGTGTAAGACGCTGGTTGGGGAATGGGAGGCATTC
GAAGCCGGGGAGAGGGAGGAGATCGAAAAGAGGCAGAAAATAAGGAACAA
GAGCACCGCCACCGCCATCACTATAAATATGGACAGTAGCGGGAGAACGA
GCGACGCATTTAACGTGGGAGCGGAGGAAGAAGAAGGCAAGGAGCGACCA
CTGCTCCTCCTGACGTCGGCCCGCAAGCGCATCACGTCCTTGCTCAGTGG
CAGTACGCGGCGACTGGAGCGCATCCTCCTGCCAATCGAGAAGGCCCTGT
CCCTGCACGGCCTCCAAGGCAGCGGGGGGGAGGGGGGAGGGAAAGGGGGC
AAGAAGAAACACGAGCGGGTGGGGCTTTGGGAGGCGTACATAGGGGTGGA
GATCGAGAGGGAGGAAAGGGAGATGGAGGGAGGGAGAGACGGAGGACATG
GCGGGGCGGAAGGAGGGTCGGTGGCACGAGCAAGAGCCCAGCAGGTGTGT
GAGCGGGCGGTGACTGACTGTTATTTTGCCCCTTCTTTGTGGGAAGCCTA
CCTGGACCTGCTTTCCCTTCCTCCCCCCCGCCGTCTCTCCCTCCATCCCT
CCTCCTCCTCCTCCTCCCCTCCTGATTACTCGGCCGCTCTAGCGGTGGCA
AAGCGGGCGATGAAAAATGCGCCTGCTGCTGCGGGAGTGTGGTGTCGATA
TCTGCGGCTTCTTGAGGCAACGGGAGCAGCAGCAGCCGCAGCAGGTGGAG
GAACTGCAGCGGCAGCATCAGCAGCAGCAGCAGCAGCAGCAGTCGACGCT
GCGGCTCAGGAAGCCTTGGAAGGGCCGCTGGAGGGCAGGGGGGAGGAAGG
ACTGCAGGTGCTCATGGCGCACATCGACATTTTCAGACGACGGGTGTGGG
TGGTTATGAAGAAGGGGGAGGGAGTGAGGGAGGACGGGGAGGAGGAGGGG
GTAGCTGGGCTGACGACGACGACGACGAAAAAGAAAGGATCGGAAGCACC
TGCACGGGCGAGTCCTGCCTCTTCTCTGGGTCAGGCGATCGCGGCCTTTC
ACGGTTCGGTGGACTACGCGGAAGgtgagaatctccctcccttccttcct
cccttccttccttccaaccaccctcctctcttaaaaaagaaagggcggtt
ggaaccgtttcttggttctacatcgctcctccctttcttgctcttccttt
actctcccccttcctccctccctccctctctctctgcgtcctcgtctctc
taggctggccagtatctctccatccagagtagcccgccgtctgcactcat
ccccccctatccttccctccctttcttccctcccccttctagCATGGCTG
GATGCCCTCTACCCTGACTGGGACGCCGCCCGCTTGGCCCTCCTCCGGAT
CCGCCTGTCTTTCCTCACGGATCTGCGGGACGTGGAGGGGGGCCTTGCGC
TGTGGAAGGGGGAGAAGGGGTTGAAGGAGGGTTCGCGCCTCCGTGCCTAC
CTCCAGACATGGCTCGAGGCCGCCGCTTGGGTTCGGGCGCACGTTGGTAG
GGATGAGGGGCTGGCGGTGCTGAGAGAGGGAGCGAGGGAGGGGGGGGTGA
TTGATTCGCGGTTGGGGGCCTGGGAGGCTTTGGCAGAGGGATTAAGGGAG
GGAGGGCGGGTGGGGAAGTGGGAGGAGGCGATGGGGTGGGTGGTGAGGGG
GCGGTGGAAGGCCAAGGCGGAGGCGGGAAGGGCGGGGGGATGGGGAGCAG
TGGCAGCTGGAGGGAGGGAGGGAGGGAGGGGCAGTCGACCAGTGGCGCCA
CCACAGCAGCAGCAGCAGCATATGCGGGCAAGGTCTCAGGAAGAAGAGCG
CGGAGGAGGTGGGGGTCACGGCAGCAGCAAAAGGCCGCAGCGGGAGGAGG
GTGGAGGACGGGGACGAGGAGGGCGTGGAGGGAAGGAGGAAGGAAGAGGG
GAAGGGAGGGGAGGGATGGAAGGACGGAGTGGTCATGGACGGGAGGAGCA
GAAGCAACCAGATCACCAGCGGCAGCGAGGAGGAGACGATCAACGGCCTC
TTAAACGGGCACGAGGAGAAGGAGGGGAGAAGCAACCAGCATCATCCTTA
CCGTCAGAGGAAGGGAAAAAGGAGACGGAGGAAGACGTGTACCAGCGTAC
TGTCTTTGTCAAGAAGCTGGACCTGAACACGACGGGCGCAGAGCTCAAGG
CCGCGATGGAGGCGCTCCTTGAAGCGGAGGGAGGGAAGGAGGGGCCAGGG
GTGGTGGACGACCTGAAATTGCTGACCAATAAGTCGGGTCGCTTCAAGGG
CATGGCCACGGTCTCCCTCAAAGCACGGCCCCTTGTGGAGGCAGCTTTGA
GGAAGGGGCGACTGGAGGGGATGGGGGAAGGAGGAATGGAGGGTGGCAAG
GCGGCGATGATCTTCCCCTTCAACACCAAGTTCGTTGCTGCTGGAAAGCA
AGGAGAAGAAGGGCTACCTTCGGCGATGCTGACCCAGCAGCAAAAGCCAA
CGCAGCAGCCGCCGCAGCAGAAGGAGAAGGATTGGCACCCCACAACTATA
TTCCTCACGGGCCTTCTGCATTGGACGGGGAATGAGACCGACCTTCGCTC
CCTTTTCGAGGCGCACATACCCGGAAGTGAGGTCCAGGCCGTCACCATCG
CTAGGGACAAGCGCTCGGGTCAGCGAAAGGGCACGGTGCTCGTTCAATTT
ACACAGCCTGAGCCCGTTGCCGCGGCCTTAAAGATGCAGCAGGGATTGGG
AAAGCTGATAGGCGTGGATGAAGTGGTCAAGGTACGCCGCTCCCGGTTCG
CGGCCGAATTAGAGGAAGATAAGGACGTGAAGGGCGGAAGGGAGGGAAGA
GGGGGCGTGGAGAGGCTGCCTCTAATGGCGGCCTCGACGGCTTCTCTGAC
GGCATTTGCCCCGCGGGTGTTGCAGCGCAAGGCTGGAAAATCGCGAATGG
GTGCCAGGGGAGAAGGGGGGGATGGGGGAGATAAGCGAGGGGATCTGACA
CAAGAAGATTTCAAGAAGATGTTTACAGGTGGGGGTGGAGGAAAAGTGCG
CACGGTGTAGATAGAGGACGACAACATCAATAAAGAAACGAGCAACGACA
TAAATAGTTCTTTTTGGTTGGTTGTCGTTCCTACATCCCTCTAGAACTAT
CGCATGCAACCTGACGTCCTCGAGGACTTGCATACGAGGGGGAGCCTTCC
AACAATAAATTGTTGCATATTCATCCCTTATTTCTTGTCCAAGTTAGGGT
TAGGGTTAGG back to topprotein sequence of NO30G01340.1 >NO30G01340.1-protein ID=NO30G01340.1-protein|Name=NO30G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1000bp
MRGGGAVGGLHVLEGHKVWEAYRGFEVGLLSKIRAAAAAAADDVGREERQ
GREEEARDRVIALFERQAAVPLVEGCKTLVGEWEAFEAGEREEIEKRQKI
RNKSTATAITINMDSSGRTSDAFNVGAEEEEGKERPLLLLTSARKRITSL
LSGSTRRLERILLPIEKALSLHGLQGSGGEGGGKGGKKKHERVGLWEAYI
GVEIEREEREMEGGRDGGHGGAEGGSVARARAQQVCERAVTDCYFAPSLW
EAYLDLLSLPPPRRLSLHPSSSSSSPPDYSAALAVAKRAMKNAPAAAGVW
CRYLRLLEATGAAAAAAGGGTAAAASAAAAAAAVDAAAQEALEGPLEGRG
EEGLQVLMAHIDIFRRRVWVVMKKGEGVREDGEEEGVAGLTTTTTKKKGS
EAPARASPASSLGQAIAAFHGSVDYAEAWLDALYPDWDAARLALLRIRLS
FLTDLRDVEGGLALWKGEKGLKEGSRLRAYLQTWLEAAAWVRAHVGRDEG
LAVLREGAREGGVIDSRLGAWEALAEGLREGGRVGKWEEAMGWVVRGRWK
AKAEAGRAGGWGAVAAGGREGGRGSRPVAPPQQQQQHMRARSQEEERGGG
GGHGSSKRPQREEGGGRGRGGRGGKEEGRGEGRGGMEGRSGHGREEQKQP
DHQRQRGGDDQRPLKRARGEGGEKQPASSLPSEEGKKETEEDVYQRTVFV
KKLDLNTTGAELKAAMEALLEAEGGKEGPGVVDDLKLLTNKSGRFKGMAT
VSLKARPLVEAALRKGRLEGMGEGGMEGGKAAMIFPFNTKFVAAGKQGEE
GLPSAMLTQQQKPTQQPPQQKEKDWHPTTIFLTGLLHWTGNETDLRSLFE
AHIPGSEVQAVTIARDKRSGQRKGTVLVQFTQPEPVAAALKMQQGLGKLI
GVDEVVKVRRSRFAAELEEDKDVKGGREGRGGVERLPLMAASTASLTAFA
PRVLQRKAGKSRMGARGEGGDGGDKRGDLTQEDFKKMFTGGGGGKVRTV* back to top
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