NO30G01280, NO30G01280 (gene) Nannochloropsis oceanica

Overview
NameNO30G01280
Unique NameNO30G01280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5043
Alignment locationchr30:463252..468294 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:463252..468294 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO30G01280 vs. NCBI_GenBank
Match: EWM20727.1 (hypothetical protein Naga_102498g1 [Nannochloropsis gaditana])

HSP 1 Score: 132.5 bits (332), Expect = 4.500e-27
Identity = 64/89 (71.91%), Postives = 74/89 (83.15%), Query Frame = 0 
Query:  321 ARLAKDETACYLISRGGFG-KHVVECNPRMSALFLPAGEIQGLVRQTGLGTSAFWGRFVCAESLLQLHSAVATVTLAQGRKSQVDVVLQ 409
            ARL KDETACYL+SRGGFG  HVVECN RM+ LFLP  EIQGLV QTGLG+SAFWGRFVC ESLL L++A+ T+ L  G K+Q+DVVL+
Sbjct:   29 ARLTKDETACYLVSRGGFGHHHVVECNQRMATLFLPNPEIQGLVHQTGLGSSAFWGRFVCNESLLSLYAALVTLMLGYGSKTQIDVVLK 117
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BLAST of NO30G01280 vs. NCBI_GenBank
Match: EWM25731.1 (hypothetical protein Naga_100087g15 [Nannochloropsis gaditana])

HSP 1 Score: 90.9 bits (224), Expect = 1.500e-14
Identity = 62/210 (29.52%), Postives = 93/210 (44.29%), Query Frame = 0 
Query:  244 ITAIANLIQGGTIDLIKAHDFMYMVRCFSKSTGRDVSYGL-------------GEALEAMLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLAK-DETACYLISRGGFGKHVVECNPRMSALFLPAGEIQGLVRQTGLGTSAFWGRFVCAESLLQLHSAVATVTLAQGRKSQVDVVLQCKTLQGTKVRCVASVGFHCDSDGKAILILRL 440
            +  I  +   G +D  K  D++ +V  F+++TG+D S+GL             GE   + LS                            A   + D+ ACY+ISRGG G   V C+  M  LF+   E+   +++TGL + + W  F   E L  LH A A V L Q   SQV+V ++C T     V C  ++ FH    G++ L+L L
Sbjct:   49 VQQIQKMASMGLLDRRKMVDYVRIVSLFNQATGKDTSHGLLDLVYHLLTCMSAGEDGGSSLSQIELLHTIGGGIGEIGGKGVRAVPGSSAATPPELDDLACYIISRGGTGAESVFCSEAMKQLFISTDELTCTLKETGLTSVSVWASFTTPEGLATLHRAAAAV-LLQRDTSQVEVQVECVTRTDLLVACTGTLTFHVSEKGESSLVLCL 257
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BLAST of NO30G01280 vs. NCBI_GenBank
Match: EWM22860.1 (hypothetical protein Naga_100988g2 [Nannochloropsis gaditana])

HSP 1 Score: 86.3 bits (212), Expect = 3.700e-13
Identity = 52/124 (41.94%), Postives = 68/124 (54.84%), Query Frame = 0 
Query:  322 RLAKDETACYLISRGGFGKHVVECNPRMSALFLPAGEIQGLVRQTGLGTSAFWGRF---VCAESLLQLHSAVATVTLAQGRKSQVDVVLQCKTLQGTKVRCVASVGFHCDSDGKAILILRLWPL 443
            RLA+D TAC ++ RG      V CN RMS+LF+   EI+GL+ QTG    AFW  F   V  E+LL   + +      QGR S  D ++   T  G K R +A++G+H   D    LILRL PL
Sbjct:  376 RLARDTTACLMVFRGNDHVSDVTCNARMSSLFMSTEEIRGLIGQTGFACCAFWSHFLDPVDVEALLAGSADLVLDKFNQGR-SSFDRIVGVTTRDGRKGRAMATLGWHSSEDVVQTLILRLIPL 498
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BLAST of NO30G01280 vs. NCBI_GenBank
Match: XP_005852550.1 (hypothetical protein NGA_0687300 [Nannochloropsis gaditana CCMP526] >EKU23282.1 hypothetical protein NGA_0687300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 84.7 bits (208), Expect = 1.100e-12
Identity = 51/124 (41.13%), Postives = 68/124 (54.84%), Query Frame = 0 
Query:  322 RLAKDETACYLISRGGFGKHVVECNPRMSALFLPAGEIQGLVRQTGLGTSAFWGRF---VCAESLLQLHSAVATVTLAQGRKSQVDVVLQCKTLQGTKVRCVASVGFHCDSDGKAILILRLWPL 443
            RLA+D TAC ++ RG      V CN RMS+LF+   EI+GL+ QTG    AFW  F   V  E+LL   + +      QGR S +D ++   T  G   R +A++G+H   D    LILRL PL
Sbjct:  398 RLARDTTACLMVFRGNDHVSDVTCNARMSSLFMSTEEIRGLIGQTGFACCAFWSHFLDPVDVEALLAGSADLVLDKFNQGR-SSIDRIVGVTTRDGRWGRAMATLGWHSSEDVVQTLILRLIPL 520
[Close]
BLAST of NO30G01280 vs. NCBI_GenBank
Match: XP_005854455.1 (hypothetical protein NGA_0244301 [Nannochloropsis gaditana CCMP526] >XP_005854696.1 hypothetical protein NGA_0244302 [Nannochloropsis gaditana CCMP526] >EKU21661.1 hypothetical protein NGA_0244302 [Nannochloropsis gaditana CCMP526] >EKU21901.1 hypothetical protein NGA_0244301 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 83.6 bits (205), Expect = 2.400e-12
Identity = 68/240 (28.33%), Postives = 109/240 (45.42%), Query Frame = 0 
Query:  228 LMDYDSALIRMARHNVITAIANLIQGGTIDLIKAHDFMYMVRCFSKSTG-RDVSYGLGEALEAML---------------SXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLAKDETACYLI-SRGGFGKHVVECNPRMSALFLPAGEIQGLVRQTGLGTSAFWGRFVCAESLLQLHSAVATVTLAQGRKSQVDVVLQC---KTLQGTK----VRCVASVGFHCD--SDGKAILILRLWP 442
            L+D  SA I  AR+ V  AIA L   G +D  K  +   ++R  S++ G  D++ G+   L+ +L               S                             +LA DE ACY++ S    G   V CN RMS LF+ + E++GL  QT +   +FW RF+    L +L  A + + +       +DV+L+C   + ++G++     +C+A+VG   +   +G  +LILRL P
Sbjct:  291 LLDSTSASILHARNGVSGAIARLAAQGMLDWEKVFNARALIRACSQARGVADMTAGVLPLLDHLLDTQPQAFAPKRRKAKSGGVGERGPPAGGAQGNSAGGDPSISQLIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPGLYELMGAFSAIMVQSTHTPSLDVILECCVQRAVKGSERPAPTKCLATVGMIINRLREGN-VLILRLLP 529
[Close]
BLAST of NO30G01280 vs. NCBI_GenBank
Match: EWM27402.1 (hypothetical protein Naga_100212g6 [Nannochloropsis gaditana])

HSP 1 Score: 83.6 bits (205), Expect = 2.400e-12
Identity = 68/240 (28.33%), Postives = 109/240 (45.42%), Query Frame = 0 
Query:  228 LMDYDSALIRMARHNVITAIANLIQGGTIDLIKAHDFMYMVRCFSKSTG-RDVSYGLGEALEAML---------------SXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLAKDETACYLI-SRGGFGKHVVECNPRMSALFLPAGEIQGLVRQTGLGTSAFWGRFVCAESLLQLHSAVATVTLAQGRKSQVDVVLQC---KTLQGTK----VRCVASVGFHCD--SDGKAILILRLWP 442
            L+D  SA I  AR+ V  AIA L   G +D  K  +   ++R  S++ G  D++ G+   L+ +L               S                             +LA DE ACY++ S    G   V CN RMS LF+ + E++GL  QT +   +FW RF+    L +L  A + + +       +DV+L+C   + ++G++     +C+A+VG   +   +G  +LILRL P
Sbjct:  291 LLDSTSASILHARNGVSGAIARLAAQGMLDWEKVFNARALIRACSQARGVADMTAGVLPLLDHLLDTQPQAFAPKRRKAKSGGVGERGPPAGGAQGNSAGGDPSISQLIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPGLYELMGAFSAIMVQSTHTPSLDVILECCVQRAVKGSERPAPTKCLATVGMIINRLREGN-VLILRLLP 529
The following BLAST results are available for this feature:
BLAST of NO30G01280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM20727.14.500e-2771.91hypothetical protein Naga_102498g1 [Nannochloropsi... [more]
EWM25731.11.500e-1429.52hypothetical protein Naga_100087g15 [Nannochlorops... [more]
EWM22860.13.700e-1341.94hypothetical protein Naga_100988g2 [Nannochloropsi... [more]
XP_005852550.11.100e-1241.13hypothetical protein NGA_0687300 [Nannochloropsis ... [more]
XP_005854455.12.400e-1228.33hypothetical protein NGA_0244301 [Nannochloropsis ... [more]
EWM27402.12.400e-1228.33hypothetical protein Naga_100212g6 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL072nonsL072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR073ncniR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR098ngnoR098Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009875NSK009875Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G01280.1NO30G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610548gene_10245Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_102498g1gene9679Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G01280.1NO30G01280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G01280 ID=NO30G01280|Name=NO30G01280|organism=Nannochloropsis oceanica|type=gene|length=5043bp
TGCAAAACAAATATACAAGAAAAAAAAAAGGAAGGATGTCCCGAGTCTTG
TTAATTTTGACGTGTTGAATGTGGGTGACTGCCTACTAAGATGGAGTTGT
AGGGTTTCGTACGGGTCGTTTCATTTTTGGGGTGCAATATTTTTTTACCT
TCCCTTTTCTCTCACCTTCCATGCACGTAATGAATGCTTGTCTGCGTCCA
TTTTCCACGCAGAAATGAGGAATCTCAAGATTCTTGGTAGACTATACCTA
ACTAGTGACAATTTAAAGCTGACAGGCCGGTTTAGTGTCTATATGGTGTT
AGAACGTATCATGCCCTCCCAATATAGGGACGCAAAGTGCTCCAGCACTT
CGAAGCGGGCTGGTTCGGGAAGCCATTGGTCGAGTGGCCTTGTGGGGGTG
TCAGCCGGTGCGTGAATTTATTGTAATCAGAGCATGTGAAATGGTGGGAA
AGATGGTGAGGTGTACGCAAAATTCAGCGCGAGGAATGTGGCGCCAGTGG
CATGTTTGTCGCTCCTGCCCCCCCCGGGCGCGAAGTCTGCAAGCCTTGTT
TGTAGCGAGGCCTGTAGTTGCATAAAGACCGATGCCGATGGCGTACCCTA
CTTTCGACCCCCTCCCGCCGACTTTGTCGAGCATTTTTTGGGGTGCACGC
TGCGATCGATACTATAACCAAAGCTTACCTTGGGTGGTCTGGGTTTGCAT
GTATAAGTGCCCTCCAACTTTCCGCACATGCGACCACTTTATATCCATGC
TTTAGTTAACCCGCACTTGTTGCGCATACTCAACCACACATCAACTTGAT
GGAGATGGCCGAGACAGCCGTCTCAGAGTACGTTGTCCGCTGTTCGTCCC
TGTTTCTCTTCCAAGGCTATACAACGCGTCTTCTGATCATGGCATGCACT
TTTTCTTCCCTTTCCCCAGAAGCCGTTGGTCGTAGTGTGTCCGCTTAGCT
GTGGGCTGCAACGTGCTGTAGAAAGGTTTGAAGGCCGAAAACCGACGGAC
ATATTGAACGCTCACCTTGAAATCTCCGGACTCCAAGCACGAATGAGAGC
CATGACGCGGTCATTTGCCGTGGGTGGCGGTAAAAATTGTGCAACATGCA
CGGGTACACGATAGCTGGTGCACGTACCGACAAAAATCTGCGTGTGTCCT
ATGGCTGCATCGATGGTGGCGGCTTAGTGGCGGACTTGTTTTTTGCTCCA
TATTCTGTTCTTGTATCGTGACGCAACTCCGGAGTGGGGGAAGTTTTGGG
GAGAATGGGATGATTATTAGTCCACAATCTTACTTGTTACTTCACCCTCA
ATCCCTATTTAATACAGCACTCGCGGCCATGCGGGAGTCAGACGAAGCAG
TCGTTCTGTTGGCGAGCATTTTGCGGCGCACAAGgtaaataatggtgggt
ttttcagtcctctcagctcggcaatcaaatcgccttttcctcattcaccg
ccctctatttttacttgtgtcgttccgcgccgcgcccctaccctcactca
cacagGGAAGGGCGCACCACGCCTCCTACACAGGAAGACCGAGTTCTGCA
GGCCACTGGTGGAGATTGTACGCAGgtaagaatcattgtatatggccgac
caactcgagggacatatattctctctagactgatcggacgcatgaacgaa
tgtataaatggacgacatgcacccattcttacagAGTGCTGGGTCGACAT
TACCAAAGACGACGAGTAGCGCCCATCATCCGCCTCGAAGAAGGGAAGGA
GAAGGGGGAGGAGGGGCAGTCCTTGACACGGAGGAAGGACGAAGTCCGAA
TACCGgtaagaggaatggaagggaggagcgagatagtgaaaggttatgtg
tttgacgtgaggaggatgtgagtttgatatgacaacagatagaggaaatt
tatgattatgggtcatgggggagaggaggaggatgaggaggaggaggagg
gggaggaggagggggatgaggaggttcaccgaagaatcttgactcattga
aagagtttcactctctcacacacacacacacacacacattttcccgccct
cccctcctttttgccccccccgcccttcccatgaaccattttgattggga
catacccgtatttcgatagATGGGGGGGCGGGTGCCGCTACTGTCGCCAG
AGCCCATCCTCACGACGGGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGA
AGCAGCAGCGGGATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCAAG
GGAACTCGGCGACCGCGAGCCCGGCCGTTAGACTACGAGGAGGAAGCGAA
GAGGAGACATATGCCTGCAGTAACAGCAATAGCGGCAGCAACAGCAACAG
CAATAGCAGGAGGAGGAATGGGAGGAGAAGAAGGAGAATGGAGGGAGGGA
GAAAACGAAGGAGAGGGGTTGCTGGTGACGAGGTTTAGTGATATGGAGAG
TAAAGGGGACAGgtgagtgttcattaattctcgtattttttattttttta
tttaattatttatttattcatttatttatttatttatttatttatttatt
tatttatttatttatttatttatttatttgattgctttttcatttctaat
ccgtttagttattcgtttgtcaggtgcactgcacgatctcttaaaatgtg
cttatcactgcacagatgacgccgttgtaggggtccgaatcccttctcaa
cactccctccctccctccctccctcgcttttatcaagccacatgccccca
ctccctccctccttctctctctttccctccctccttcgtcctgtccgcct
cctcaagcgggtcacttggaaacttaaatcttatcccatcgcccatacac
ttctcaatactgcctctttcatgatccctccctccctctctccttcagTG
TCTGCGCCCGTCCCTGGCACCTCATGGACTACGACAGCGCGCTAATCCGC
ATGGCCAGACATAATGTCATCACCGCCATAGCCAACCTCATACAAGGAGG
AACCATAGACCTCATCAAGGCCCACGATTTCATgtacgtccctccctccc
tccctccctccctccctcctatcccgcctttctttcttcttggtccaaat
ccctttcccccccctccacttcgtcccctcctcccctccctccctccctc
cctcccttcccagGTATATGGTCCGATGCTTCTCCAAAAGCACCGGACGA
GACGTCAGCTACGGCCTGGGCGAGgtacgttcctccctcccttcctccct
ccctctctctattccaatattgctgttgtagctacggatgcggctatttt
tacgactgcgaccgcttctcacccttccttccgtcctgcctcccgccctc
gcgcccttttccacaccttcccgatcagGCCCTGGAGGCCATGCTCTCCT
CCTACCCACCCCAGCAGCAGCAGCAGCAGCAGACGCTGCCGGGCTACTCC
CTTGTCCATCATACCACCGCAGCTGCTCTCGCCGCCCGCCTGGCCAAAGA
CGAGACTGCGTGCTACCTCATCAGTAGAGGCGGCTTCGGGAAGCATGTGG
TTGAgtgagtctttcctccctccttcccacccctcctcctcctcgtctta
ctctgtgtgtgcatggatttacgtgcaatcccctcctccctctttccctc
ccaccattccaccattccaccattcctttcctcctcatgtaggtacgata
gccagcataatttgaaccaattcaaaattcaaaattcaaaatacaaaatt
caactcccagGTGCAATCCGCGCATGAGCGCTCTCTTCCTCCCTGCCGGT
GAGATCCAAGGGCTGGTGCGACAGACAGGCTTGGGCACCTCTGCGTTCTG
GGGCAGGTTTGTGTGTGCCGAGTCCCTCTTGCAGTTGCACTCGGCTGTTG
CCACAGTCACCCTCGCCCAGGGGAGGAAGTCACAGGTCGACGTGGTGCTG
CAGgtagggtagtagttcagcaggtccctctccctccatccctccctccc
ttacttcctcccttacttcctctgagcaagaacatgcatgccgaaacttg
aattccctttcaccttccacccttccctcccccccgccctccttcccgcc
ctccctcccttcctccctcagTGCAAAACCCTCCAAGGCACCAAAGTACG
ATGCGTCGCCAGCGTCGGTTTCCATTGCGACTCAGATgtacgtccttgcc
tccctctctcccgttctctcgccctcccttcctcctttcttcccttccat
accttttgcatgggtcagcctccttgccccccacacagcccaatccttcc
ctccctccctccctcccaaccttcctccctccctccttctctagGGCAAG
GCGATTCTCATCCTCCGCCTTTGGCCGCTTGTCGCGAGGAGCTTTAGGGT
CGACCGGGCCCCTCCCTCCCTCCCTCCCTCGCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTAGTCTGCAGCGGGCGGGGCAGAGTGCGAGTGGAAGCAGC
ACCAGCAGCGGTGGCGGAGGAAGAGGAAGAGGAGGAGGAGGAGGCGAGGT
GTTGGACATCGCCTCACCCTTCGTCTCGCCCTCCCTCCCGCCCTCCGTCA
GCCCCCCCTTCCCTTCCCCCCTCCTTCCCTTCGTGTCCTCCTCCACCTCC
TCCTCTTCCTCCTCCTCCACCTCCTCCTCCTCCTCCTCCCTACCACATGC
AGCAGGAGCAGGAGCAGGAGCAGCGGCAACAGCGGCGATTCCAGCATCAA
GAGTGCACTCGACAAACAGCAGCAGCAGCGGCAACAGCGGCAGCAGCAGC
AGAGAGGGGAGGACCGACGATGGGGAAGGAGCTACCGGAGGAAGAGAGGG
AGGGAGGGAGGGGGGGCCGGGGGAGGCGCCGTTGCAGCCAGTGCTCCACT
GAAACCAACCTCTCTTCCTTCTCCTCCTTCCCTCCCTTCCCACTCCTCCT
CCTCCCCCTCACCTTCCTCACATTCCTCATTTACTCGATGTGGAGAAAAT
GAGCAAGAGGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGG
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protein sequence of NO30G01280.1

>NO30G01280.1-protein ID=NO30G01280.1-protein|Name=NO30G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=616bp
MIISPQSYLLLHPQSLFNTALAAMRESDEAVVLLASILRRTREGRTTPPT
QEDRVLQATGGDCTQSAGSTLPKTTSSAHHPPRRREGEGGGGAVLDTEEG
RSPNTDGGAGAATVARAHPHDGEQQQQQQQQQKQQRDQQQQQQQQQQRKG
TRRPRARPLDYEEEAKRRHMPAVTAIAAATATAIAGGGMGGEEGEWREGE
NEGEGLLVTRFSDMESKGDSVCARPWHLMDYDSALIRMARHNVITAIANL
IQGGTIDLIKAHDFMYMVRCFSKSTGRDVSYGLGEALEAMLSSYPPQQQQ
QQQTLPGYSLVHHTTAAALAARLAKDETACYLISRGGFGKHVVECNPRMS
ALFLPAGEIQGLVRQTGLGTSAFWGRFVCAESLLQLHSAVATVTLAQGRK
SQVDVVLQCKTLQGTKVRCVASVGFHCDSDGKAILILRLWPLVARSFRVD
RAPPSLPPSLPPSLPPSLPSLQRAGQSASGSSTSSGGGGRGRGGGGGEVL
DIASPFVSPSLPPSVSPPFPSPLLPFVSSSTSSSSSSSTSSSSSSLPHAA
GAGAGAAATAAIPASRVHSTNSSSSGNSGSSSREGRTDDGEGATGGREGG
REGGPGEAPLQPVLH*
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Synonyms
Publications