NO30G01210, NO30G01210 (gene) Nannochloropsis oceanica

Overview
NameNO30G01210
Unique NameNO30G01210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length801
Alignment locationchr30:434706..435506 -

Link to JBrowse

Properties
Property NameValue
DescriptionKetopantoate reductase ApbA/PanE
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:434706..435506 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036291NAD(P)-bd_dom_sf
IPR013332KPR_N
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0015940pantothenate biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:00086772-dehydropantoate 2-reductase activity
Homology
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BLAST of NO30G01210 vs. NCBI_GenBank
Match: WP_007227463.1 (2-dehydropantoate 2-reductase [marine gamma proteobacterium HTCC2148] >EEB80404.1 2-dehydropantoate 2-reductase [marine gamma proteobacterium HTCC2148])

HSP 1 Score: 68.6 bits (166), Expect = 3.400e-8
Identity = 49/152 (32.24%), Postives = 68/152 (44.74%), Query Frame = 0 
Query:   33 HYHILGAGAMGCLVGAALAHKAGVRVSLLTRHRPLFPTATIHVRETYVRAAAPPSFRHTSPPTSTXXXXXXXXXXXXXXXXXXXXTTYAPHVFLEENSSSYSNTTSKISHLLVLTKAYDIKNALKSIAPRLRKDTVVLLLSNGMGYLEEARA 185
            H+HILGAGAMGCL  + L  +AG RV+LL RHRP   ++++ V              H +                                           +T +I+HLL+ TKA D  +A+KSIAPR+ K   +L  +NGMGY    +A
Sbjct:    5 HWHILGAGAMGCLFASQLV-EAGCRVTLLLRHRPEAGSSSLTVESKNSSNELTVQLDHAA-------------------------------------------STGEINHLLITTKAQDAVDAVKSIAPRIGKQASILFATNGMGYAAAVKA 112
The following BLAST results are available for this feature:
BLAST of NO30G01210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
WP_007227463.13.400e-832.242-dehydropantoate 2-reductase [marine gamma proteo... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR073ncniR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR098ngnoR098Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G01210.1NO30G01210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G01210.1NO30G01210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G01210 ID=NO30G01210|Name=NO30G01210|organism=Nannochloropsis oceanica|type=gene|length=801bp
ATGCGTGGAGTAGCAACATCATCATCACTATTTTCACCAGCAGCATCAGA
AGCGGCAGCGCCACCACCACTACCACGGCCACCACCCGAAACATCACACT
ATCACATCTTAGGTGCTGGTGCTATGGGTTGCTTGGTCGGTGCCGCCCTC
GCACACAAGGCAGGAGTCCGCGTCTCCCTATTGACCCGGCATCGGCCTCT
TTTCCCCACGGCCACGATCCATGTCCGGGAAACCTACGTCCGTGCTGCTG
CCCCTCCTTCTTTCCGCCATACCTCTCCGCCTACTTCCACATCTCCTTCA
TCTTTATCCTCTCCTCCTTCTTCACCATCGTCCTCATCTTTGTCATTCTC
CACCACCTACGCACCTCACGTTTTCCTTGAAGAAAACAGCAGCAGCTATA
GCAACACTACCAGCAAAATCTCCCACCTTCTCGTCCTCACCAAGGCATAT
GACATTAAAAATGCGCTTAAAAGCATCGCCCCTCGCTTAAGGAAAGATAC
AGTGGTCCTTCTTCTTTCCAATGGTATGGGTTATTTGGAAGAAGCACGGG
CAGCTCTTGGGGGAGGAAGGAAGGGCGGCAGCAGCAGCGGCAGCAGCAGC
ATAGGAGGGAAGGAAATCAAGAGCGAGGATCAAGAGGATGGGCCAATGTG
TGTTGTAGGCACAATAACGCATGGGGGCTTGAAAGCGGAAGGGGCATGGG
AGGGAGGGGGGAGGAGGAGGTGGTGGCAACGCGCAGCAGCAGCAGTAGCA
GCAGCTGTAGTGACGAATCGGTTCACTTCTATGTGGAACACACCGGTTTA
G
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protein sequence of NO30G01210.1

>NO30G01210.1-protein ID=NO30G01210.1-protein|Name=NO30G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MRGVATSSSLFSPAASEAAAPPPLPRPPPETSHYHILGAGAMGCLVGAAL
AHKAGVRVSLLTRHRPLFPTATIHVRETYVRAAAPPSFRHTSPPTSTSPS
SLSSPPSSPSSSSLSFSTTYAPHVFLEENSSSYSNTTSKISHLLVLTKAY
DIKNALKSIAPRLRKDTVVLLLSNGMGYLEEARAALGGGRKGGSSSGSSS
IGGKEIKSEDQEDGPMCVVGTITHGGLKAEGAWEGGGRRRWWQRAAAAVA
AAVVTNRFTSMWNTPV*
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Synonyms
Publications