NO30G01160, NO30G01160 (gene) Nannochloropsis oceanica

Overview
NameNO30G01160
Unique NameNO30G01160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2665
Alignment locationchr30:423166..425830 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:423166..425830 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO30G01160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR073ncniR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR098ngnoR098Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G01160.1NO30G01160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569709gene_10232Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G01160.1NO30G01160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G01160 ID=NO30G01160|Name=NO30G01160|organism=Nannochloropsis oceanica|type=gene|length=2665bp
ATGCAGCCATTACCACCCCTTCAAACCACGCCACCAGCCGCAGCGGGTGA
GTTCCACCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGC
AGCGGGATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAACTCCACAACTATTTCCACGCGCACCAAGA
CGACCCAGATCTCTCTCACCAACCAAGTCGCGCATTGTCTACTTTTACCA
CCGCCCAGGACACCGTCGATCGACAGCACACACACCTACCCGAACATGCC
CACGCTTCTTCTTTTCATCTACCGAGCAATAAGCCGCACTACCAGCATGA
AGTGAGCTCCCTTCGTGCCATCATCACCGCGCAAGACGCCATCCTTCGAC
AGCATCCCCACCCCCAAGGCAAGGCATATGACATGCTTTTGCAGAAATGG
CGGGAAGAAGTCTTCCGACTCCTTCAAGTCCGGGAGATTGACAAGCTGCG
GTACGAAGCTGACGTTCACCGGCGGACGGAGAAAGCAGCAGCAGCAACAG
CAGCAGCAGCAGCAAGTATTGCATCGCTCGAGGCCGAATGTTTTATGCTG
GAGAAAGAGAAAGGGCATGCGGTGGCACAGGCAAGAGGAGCTGCAGCAGC
AGCAGCAGCAGCAACGATCGACAAGCTAAGAGCAGAATGTCTATCCCTGA
AAGAGGGAAAAGAGGAAGCGGCAGCAACAGCAGCAGCAACGATTGACAAG
CTAAGAGCAGAATGTCTGTCCCTGAAAGAGGGAAAAGAGGAAGCGGCAGC
AACAGCAGCAGCAACGATTGACAAGCTACGAGCAGAATGTCTGTCCCTGA
AAGAGGGAAAAGAGGAAGCGGCAGCAACAGCAGCAGCAACGATCGACAAG
CTACGAGCAGAATGTCTGTCCCTGAAAGAGGGAAAAGAGGAAGCGGCAGC
AACAGCAGCAGCAACGATTGACAAGCTACGAGCAGAATGTCTGTCCCTGA
AAGAGGGAAAAGAGGAAGCGGCAGCAACAGCAGCAGCCATAGCGAGAAAA
ACCACAGGTTTGGAAGCGCGCTGTCTGTCTCTGGAGAAGGAAAGAGAGGA
AGCTGCAGAAGCAGCAGCTGCAGCTGTTGCTGCAGCAGCACGCGCAAAAG
CAGCCAGGGAAAGGCTGGAAGAGGAGAAGGATTTTTGTGAGCTTCACCAC
AGGAACGAACTCGCTGCATTGGAGGCCGACAGACGGTCCTTAGCATATTT
GCTTGCTGCTGCTGCTGCTCCTGCTGCTGCTGCTGCTCCTGCTGCTGCTG
CCTCTGAACCAAAAAATACCCTCCCCTCATCCCTTTCTTCCCTCCTGCAG
GGGTGGAGAGACTCGGAAGCTCTGCATTCAGATGGTCCAGAATTGGCATC
CCTTTTGCTCCCGCCACGAAGGGGAGGGAAGAAGCAGAAGGAGGAGAAGG
AGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGAAG
GAGGAGAAGGAAGAGGAGAAGATTGGCGAGGACGGCCGTACTTTCTCTTC
TCCTCATTCTCTATGTCTCTCCTCTTTCTCATTCTCTTATTCTTCACCAT
CACCACCTTCTCCTTATCCTTCGTCTTCTTCTGTATCTCCTCTTCCCTCC
TCCTCCCCTGCAGGAGAGACAGTCTTTTCTGCTCCTACTGCTGTTCCACC
TTCTTTTGGTCCCCCTTCTCCCTCCTTTTCACCACTTCTCTCCCTTGACC
TCGCGGCAGAAGCAGCCATGCGTCGGGTTTTTCAATTAGTGGATCGGGAG
GGAGATGAAAAGGGGTGGGTATGCCCTTCCACGCTCCTCACCGCTTTCGC
CCGCGATGAGGAAGTGAGGAGGGTGATGGGGATTGAGGGAGGAGGGAACA
GAGAGGAGAAGAGGGGGGTAGGCTGTTCCGATTCTGTCAACATTGTGGGT
GCGAAAAAAGTGGGGGAGGGTGAGGAGGAGGAGGAGGAGGGGGATGACGG
GGAAGGGGAAGAGAGGGAGGGGTTGATCGAAGCCTTGAGGGGTTTGATGG
GCCACGAGACGGTAACGTGGGGAGAGGTCCTGCTGTGCTTTGTGCCGGAT
ACTCCACAGGGAGGAGGTGGAGGAGGAAGGAAAGGAGGGTGTGAAGGTGT
TGAGGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGCGAGAGAGAAGAGA
CGGAAAGACATGATGGAGGGGGCAAAAGAGGGAAAGAGGAAGTACAAAAT
GTTTCAATAGATCCGAATCATGACCAAGGGAGCCCGAGGTCGAATTGGAA
GGTGAAAGAAGGGGGAGAGAAAAGAGAAAAAAGACGTGAAAGTGAATGTG
CCCCTGGAAAGGGAGGAGAGGACAAACGGTTGCTAGCCCGTTTGGAAGAG
CTTGAGGTGTTAAGTCGGCGACTGCTAGGAGAATTATAAGTTTGATGTGA
CGCGCGCGCGTGTGTGCGATCCACATAATGTCGGTGTGTAGGTGTGTACG
TCTGTAGATATGTACATAGAGCAGGAGTTAAAGGGCTTGTTCATGACGGT
TTCAAAGTAAATTGTAATGGTTCTCGTTTCAGCTTTCACAAAATCAAATC
GTATATTCTTATTGCCCTGATGCACTTTATTTTCATGGCTCAGGTTATAA
AATATTTGTTCGGAA
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protein sequence of NO30G01160.1

>NO30G01160.1-protein ID=NO30G01160.1-protein|Name=NO30G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=813bp
MQPLPPLQTTPPAAAGEFHHQQQQQQQQQQQKQQRDQQQQQQQQQQQQQQ
QQQQQQQLHNYFHAHQDDPDLSHQPSRALSTFTTAQDTVDRQHTHLPEHA
HASSFHLPSNKPHYQHEVSSLRAIITAQDAILRQHPHPQGKAYDMLLQKW
REEVFRLLQVREIDKLRYEADVHRRTEKAAAATAAAAASIASLEAECFML
EKEKGHAVAQARGAAAAAAAATIDKLRAECLSLKEGKEEAAATAAATIDK
LRAECLSLKEGKEEAAATAAATIDKLRAECLSLKEGKEEAAATAAATIDK
LRAECLSLKEGKEEAAATAAATIDKLRAECLSLKEGKEEAAATAAAIARK
TTGLEARCLSLEKEREEAAEAAAAAVAAAARAKAARERLEEEKDFCELHH
RNELAALEADRRSLAYLLAAAAAPAAAAAPAAAASEPKNTLPSSLSSLLQ
GWRDSEALHSDGPELASLLLPPRRGGKKQKEEKEKEEEEEEEEEEEEEEK
EEKEEEKIGEDGRTFSSPHSLCLSSFSFSYSSPSPPSPYPSSSSVSPLPS
SSPAGETVFSAPTAVPPSFGPPSPSFSPLLSLDLAAEAAMRRVFQLVDRE
GDEKGWVCPSTLLTAFARDEEVRRVMGIEGGGNREEKRGVGCSDSVNIVG
AKKVGEGEEEEEEGDDGEGEEREGLIEALRGLMGHETVTWGEVLLCFVPD
TPQGGGGGGRKGGCEGVEGGGGEGGGGGGEREETERHDGGGKRGKEEVQN
VSIDPNHDQGSPRSNWKVKEGGEKREKRRESECAPGKGGEDKRLLARLEE
LEVLSRRLLGEL*
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Synonyms
Publications