NO30G01110, NO30G01110 (gene) Nannochloropsis oceanica

Overview
NameNO30G01110
Unique NameNO30G01110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4624
Alignment locationchr30:407267..411890 -

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Properties
Property NameValue
DescriptionPkhd domain-containing transmembrane protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:407267..411890 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0031418L-ascorbic acid binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016491oxidoreductase activity
GO:0005506iron ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Homology
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BLAST of NO30G01110 vs. NCBI_GenBank
Match: KOO27289.1 (pkhd domain-containing transmembrane protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 92.8 bits (229), Expect = 2.400e-15
Identity = 64/192 (33.33%), Postives = 95/192 (49.48%), Query Frame = 0 
Query:  185 CDRVITDDVWGEAQCRQVVEAVESAVRHGLLLPQGPEVSFSPLQPITEEAIGGHAHALLLEALEIIRGAVTHDYHVTRELFCADALLSRLGPVAPDAPSNGL------MYWDAHIDKANKRAYDFSATLFLNAKDHDSPTPGQGEAGKEDAASRPPSLPTFLGGDFLFLDADAHRNVCPLPGRLVTFTSGFE 371
            C RV+ D    E +   ++  VE  +R   L  QG + SF+P        +G   HAL    L+ +R  +  D+ V R L+ A +LL+R+       P +G+       Y + H+DKAN+ +YD+SA L+LN+  H    PG   A   D     P  P F GG F+++D  +   V P  GRL+TF+ G E
Sbjct:    3 CGRVMRDHFLDENEQTALITTVERTMRG--LFHQGAQTSFAPEAKSAARHMGAAGHALFASVLQRVRRTLESDFGVAR-LYSAGSLLTRIW-ADERVPRDGMDVEPGHRYDNPHVDKANRASYDYSALLYLNS--HCHADPGAPRACDYDR----PERPDFDGGRFVWVDEGSDLVVEPRAGRLLTFSGGTE 184
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BLAST of NO30G01110 vs. NCBI_GenBank
Match: XP_005823080.1 (hypothetical protein GUITHDRAFT_146036 [Guillardia theta CCMP2712] >EKX36100.1 hypothetical protein GUITHDRAFT_146036 [Guillardia theta CCMP2712])

HSP 1 Score: 80.5 bits (197), Expect = 1.200e-11
Identity = 70/254 (27.56%), Postives = 109/254 (42.91%), Query Frame = 0 
Query:  129 ADKIARHTRDGKPSLLLAGPTKLPSRKQ---------RFSVIHEGIPRRPPPPSYAKTRSEKMHFCDRVITDDVWGEAQCRQVVEAVESAVRHGLLLPQGPEVSFSPLQPITEEAIGGHAHALLLEALEIIRGAVTHDYHVTRELFCADALLSRLGPVAPDAP---SNGLMYWDAHIDKANKRAYDFSATLFLNAKDHDSPTPGQGEAGKEDAASRPPSLPTFLGGDFLFLDADAHRNVCPLPGRLVTFTSGFE 371
            AD+I    RDGK  + L   T + +            +F     GI +   P       + +   C R++ D+     + R +  A E+A+ +  L  QG   S +P+  +  E +G     L+   L  ++  +  ++ +   ++ + ALL+RL    P        G +YW+ H+DKAN   YD+SA L+LN    D                       F GG+F F+D DA R V P  GRL+ FTSG E
Sbjct:  123 ADRIRTAYRDGKAQVRLLSATDIVTSSSISWDVPCALKFYQDAYGIVQGCTP------STARQGVCSRIVVDEFGEPDEMRDLAIATEAAMVN--LFHQGGSTSLAPVSSL--ERLGVKGGLLVQYFLAKVKLRIMREFGL-EVIYDSGALLTRLKGDPPRDEWDVEPGHVYWNPHVDKANIPTYDYSALLYLNTHGKD-----------------------FHGGEFSFIDDDADRIVQPRAGRLLIFTSGPE 342
[Close]
BLAST of NO30G01110 vs. NCBI_GenBank
Match: KOO25285.1 (pkhd domain-containing transmembrane protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 77.0 bits (188), Expect = 1.400e-10
Identity = 46/119 (38.66%), Postives = 59/119 (49.58%), Query Frame = 0 
Query:  253 AVTHDYHVTRELFCADALLSRLGPVAPDAPS-NGLMYWDAHIDKANKRAYDFSATLFLNAKDHDSPTPGQGEAGKEDAASRPPSLPTFLGGDFLFLDADAHRNVCPLPGRLVTFTSGFE 371
            AV  D+  TR L+ A A+L+R  P     P  +   Y  AH+D+AN  +YD+SA L+LN       T G+G                F GGDF+F+D      V P  GR V FTSGFE
Sbjct:   46 AVRRDFGETRPLYLAGAMLTRTQPPGDSTPKPDAYSYGVAHVDRANMSSYDYSAVLYLN-------TQGRG----------------FAGGDFVFVDEHEDEVVEPRAGRCVLFTSGFE 141
[Close]
BLAST of NO30G01110 vs. NCBI_GenBank
Match: XP_008877821.1 (hypothetical protein H310_12529 [Aphanomyces invadans] >ETV93479.1 hypothetical protein H310_12529 [Aphanomyces invadans])

HSP 1 Score: 69.3 bits (168), Expect = 2.800e-8
Identity = 51/157 (32.48%), Postives = 67/157 (42.68%), Query Frame = 0 
Query:  215 LLPQGPEVSFSPLQPITEEAIGGHAHALLLEALEIIRGAVTHDYHVTRELFCADALLSRLGPVAPDAPSN-GLMYWDAHIDKANKRAYDFSATLFLNAKDHDSPTPGQGEAGKEDAASRPPSLPTFLGGDFLFLDADAHRNVCPLPGRLVTFTSGFE 371
            L  Q P V F+  Q           + L  + +E IR A+ H++ +T   F A   L+RL   A   P+     YW AH+DK N   YD+S  L+L             + G E           F GG F FLD   +  V P  GRL+ FTSG E
Sbjct:  150 LYRQDPPVQFTTAQ-----------YTLYRDTIEAIRRAIMHEFQLTTLYFTAPTFLTRLIGNASWTPAELHDEYWHAHVDKNNTHHYDYSGLLYL------------ADYGVE-----------FTGGMFAFLDHHRNTTVEPARGRLMMFTSGAE 272
[Close]
BLAST of NO30G01110 vs. NCBI_GenBank
Match: XP_008877823.1 (hypothetical protein, variant 2 [Aphanomyces invadans] >ETV93481.1 hypothetical protein, variant 2 [Aphanomyces invadans])

HSP 1 Score: 69.3 bits (168), Expect = 2.800e-8
Identity = 51/157 (32.48%), Postives = 67/157 (42.68%), Query Frame = 0 
Query:  215 LLPQGPEVSFSPLQPITEEAIGGHAHALLLEALEIIRGAVTHDYHVTRELFCADALLSRLGPVAPDAPSN-GLMYWDAHIDKANKRAYDFSATLFLNAKDHDSPTPGQGEAGKEDAASRPPSLPTFLGGDFLFLDADAHRNVCPLPGRLVTFTSGFE 371
            L  Q P V F+  Q           + L  + +E IR A+ H++ +T   F A   L+RL   A   P+     YW AH+DK N   YD+S  L+L             + G E           F GG F FLD   +  V P  GRL+ FTSG E
Sbjct:  118 LYRQDPPVQFTTAQ-----------YTLYRDTIEAIRRAIMHEFQLTTLYFTAPTFLTRLIGNASWTPAELHDEYWHAHVDKNNTHHYDYSGLLYL------------ADYGVE-----------FTGGMFAFLDHHRNTTVEPARGRLMMFTSGAE 240
[Close]
BLAST of NO30G01110 vs. NCBI_GenBank
Match: XP_009839086.1 (hypothetical protein H257_13305 [Aphanomyces astaci] >ETV71421.1 hypothetical protein H257_13305 [Aphanomyces astaci])

HSP 1 Score: 67.8 bits (164), Expect = 8.200e-8
Identity = 49/146 (33.56%), Postives = 65/146 (44.52%), Query Frame = 0 
Query:  226 PLQPITEEAIGGHAHALLLEALEIIRGAVTHDYHVTRELFCADALLSRLGPVAPDAPSN-GLMYWDAHIDKANKRAYDFSATLFLNAKDHDSPTPGQGEAGKEDAASRPPSLPTFLGGDFLFLDADAHRNVCPLPGRLVTFTSGFE 371
            P+Q  TE+      + L  + +E IR A+  ++ +    F A   L+RL   A   P      YW AH+DK N R YD+S  L+L             + G E           F GG F FLD D +  V P  GRL+ FTSG E
Sbjct:  160 PVQFTTEQ------YTLYRDVIESIRLAIMDEFRLATLYFTAPTFLTRLIGNASWVPQEMHDEYWHAHVDKNNTRHYDYSGLLYL------------ADYGVE-----------FTGGLFAFLDKDKNITVEPAQGRLMMFTSGME 276
[Close]
BLAST of NO30G01110 vs. NCBI_GenBank
Match: XP_009034298.1 (hypothetical protein AURANDRAFT_62142 [Aureococcus anophagefferens] >EGB10707.1 hypothetical protein AURANDRAFT_62142 [Aureococcus anophagefferens])

HSP 1 Score: 65.1 bits (157), Expect = 5.300e-7
Identity = 46/137 (33.58%), Postives = 61/137 (44.53%), Query Frame = 0 
Query:  237 GHAHALLLEALEIIRGAVTHDYHVTRELFCADALLSRLGPVAPDAP---SNGLMYWDAHIDKANKRAYDFSATLFLNAKDHDSPTPGQGEAGKEDAASRPPSLPTFLGGDFLFLDADAHRNVCPLPGRLVTFTSGFE 371
            G A A +++AL     AV  ++   R L  A ALL+RL     D       G  YW+ H+D+ N  AY +SA ++L            G+ G +           F GG   FLD D  R V P  G LV F+SG E
Sbjct:   21 GGAAAAVVDALRDRAAAVITEHLGARGLVAAGALLTRLSAAPADDALELDAGHAYWEPHVDRDNVAAYAYSALVYL------------GDQGAD-----------FAGGTLEFLDGDGARAVRPRRGLLVAFSSGAE 134
The following BLAST results are available for this feature:
BLAST of NO30G01110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
KOO27289.12.400e-1533.33pkhd domain-containing transmembrane protein [Chry... [more]
XP_005823080.11.200e-1127.56hypothetical protein GUITHDRAFT_146036 [Guillardia... [more]
KOO25285.11.400e-1038.66pkhd domain-containing transmembrane protein [Chry... [more]
XP_008877821.12.800e-832.48hypothetical protein H310_12529 [Aphanomyces invad... [more]
XP_008877823.12.800e-832.48hypothetical protein, variant 2 [Aphanomyces invad... [more]
XP_009839086.18.200e-833.56hypothetical protein H257_13305 [Aphanomyces astac... [more]
XP_009034298.15.300e-733.58hypothetical protein AURANDRAFT_62142 [Aureococcus... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR073ncniR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR098ngnoR098Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G01110.1NO30G01110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643172gene_10225Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G01110.1NO30G01110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G01110 ID=NO30G01110|Name=NO30G01110|organism=Nannochloropsis oceanica|type=gene|length=4624bp
CCCGTGGTACGTCTGGGTAGTGCTATATACGAGAAGAGGGAGGGAGCGAG
GGAGGGAGGGAGGGAGGGACAACCGAAACGATGCCCATGAGAAAGAAAGA
AGAGAGAGTAAGAGAGTGTGGGGATAGGGCTTGTACAGTGTATGGGAAGG
GCGCAACAGGCATGCGTGTATCTGTCTATCTGGCTTGACTCACCGATCCC
ACCGCCCCTGGTTGTCGGTAGTCATGCCCTCGCTCGCCATGGTACTGCTG
TGTCCTATGTATTGCGTGACGTGCAAGGACTTCGTGACTTAGACAAGGCG
TCTTTCTTTACCTTCTTTCCTTATTTTATTTATTTTCCTGTTGTGTGGCC
GTGTCTCGGTGAGTCGTGTCGTGTGTCGTGTACGAACGCGGGTGGGTAAA
TGTAGGGTGCTGATTCGTCCGTCCGACTCTGTACTCTGAATGTAGGAGGG
TGCAGGAGTTCGGGGGTTCCAATGCCCGATTTCACATGGCAAGTCGCTTA
TCAAACCATCGCTTTTACTGCTGTATACATGATGTGTTACGAGGGTAAGC
TTTGTTTGGGAGCAGATCGGAGTACTGGAGGCATGACGCTGGCACGGCGG
CGGCGATGGGAGAGCGATTCGAAGCGCTTCTTTCATTGCGCTGTCACTGC
CCCGGCCTTTTTGGGGGGGCACTCAAACAGGCAGCCTTTGTCTCAAATAT
CCGTGGGCAAAACCCATGAGGAGGAAAAGGAGATGGTGATGGTGGTGGTG
GTGATGGAGGTGGGAATGAATCTATTGCGAAAAAGAAGAGTGTATGGAAA
GGCAAGGGTGGGAGGTCGTCAAAGTGAAGTGCCAGAGGAGACCGAGCCAA
AGAGCCGTTCCTTGTCGTCGTGTCTAAGCTGGCCCACGCCAGACCCTCTC
TCCAAGCACGCAGGGAAACTGCCGCAATTATGCTTCTACATTGCATTGCC
AAGACTGGTCACATATTTGAGAAAGGAGAAACACAACGTGTCATGGACGT
GACAACAACATGGCCCGGCTGTAAGCGCACAGAGCTTGAAGTAATGTAGC
GGCACAAGCTCACACACCCCTCCACGTACCAACACCTGCGCAGAACACGT
ATACCCACATCTATGCACACAGCGTATTTGTAGGCTCGGCCGGAACATTT
GGGTGTCTTGGCATTTTTGGGACTGTCTAAGGCAGACTTGCTCTCGCCCC
CTCGACGTGTCAATAATTGCTAGAAACGGTGATTGATTCTCTCTCCTCTC
CTCGTAACACCAACCCATATATCCGCAGGTTCGAACAAGCATAAGTGGAA
TTCTCCTTTAGCTATGCCTGTCCGTTTCCCGCTGCGTGGCTCAGTGCTTA
TTCGTTGCTCCAGTGCACTTCCACACTGCTTCAACTTAAGTGCATGCTCC
CTCTTCTTGTTCCATGCCCTCATCTACAAGAATTTCCTTTTCCCATCCAC
ACACCCTACACCACAGCCACTCCCCTCCTGCCAAGAAAAATGATAAGACG
CGCCTCTTCCTCCCTTGTCGTCTCCCCCCGCAGCGCCACGAGCACTTTCT
ATAACACCCTCCCTTGCTCCTCCCCTTCGTCCTCGGCCTCCCTCACCACG
AAGAAGACCTTTCGGTCCTCTCCTCCTCCGCCTTCACTCCTGCCCCATCC
CTCTTCGTCTCGTTCTATCCACACCTGGCATGCCATCGCCAGTAGCACTC
AACCAAGAGGGAAGAATGGAGGGGTCCCACCCTTGATTGGAGAGGAGCTG
CCCTGGTCTCAGATTGAAGCCGCAGCAGCTGATAAAATAGCGAGGCACAC
ACGAGACGGGAAGgtaaggaagggaggggcaggaactgggaaaggacgga
ccacgacatgatataatatgattattacacacacaaatgtacatctacgt
atgtatctcttgaggccgacaccctcacccctccctccctccccccctcc
ctccctttcctccagCCCTCCCTCCTCCTCGCAGGCCCTACCAAACTTCC
CAGCAGGAAACAACGGTTTTCCGTTATCCACGAAGGTATCCCACGTCGTC
CTCCCCCTCCTTCCTATGCCAAAACCCGCAGCGAAAAAATGCATTTCTGT
GACCGTGTCATCACGGATGACGTCTGGGGGGAGGCGCAGTGTCGTCAGGT
GGTTGAAGCTGTGGAGgtgagagagggagggagggaaggaggggggatgg
gaacgtgggaggccgtagtgtagcatacattcgtggtcaatgccggggca
agggatattgtttatttatattttctgactttcccttttttttaattgaa
tatttattaatattatatttattttgtttatttattttcattttttcatt
tattcattctaatttttccgtctatataatttattttcgtaaataattat
acaatgtaattgaaccacatatgttttttaattattaaattattaaatta
ttaaattattaaattattgtaaatttatttatttacttgtaatcccatgt
tcacccacctacagTCGGCAGTGCGTCACGGCCTCCTCCTTCCACAAGGA
CCCGAGGTGTCCTTCTCCCCCCTTCAACCTATCACCGAGGAAGCGATAGG
TGGACATGCCCACGCCCTTCTCCTTGAGGCCCTGGAAATAATCCGAGGGG
CCGTTACTCACGACTACCACGTGACCCGTGAATTGTTCTGCGCGGACGCT
CTCCTGTCACGGCTAGgtacgtacgtcccttccctcccttcctccctgcc
tccctcccttctccttcccaccctccttccctccctccttcccgccttgc
ctcacttgcccctacgttcctctttttcaccctccctctccatcgtattc
gtcttgtccagcccgtgattttggctcccgcattatcttacctctcatct
actttccaacgcatcattttttaaacctcgccctccctccctccctcctt
ccctccctccctccatccctcccccccatagGCCCTGTGGCCCCGGACGC
GCCTTCGAATGGCCTCATGTACTGGGATGCCCACATCGACAAGgtgaggg
agggagggagggagggagggagggcaagaccaaaaagggtatagagggag
ggagggagggagggggggagggaggggaataggggtgaccgaaaatgcgg
aggtgaagtcggaggatattttcacatttaaaactaatgcacatgtcccc
tctcctttccttcctctctccctccctccctccctccctccctccctccc
ttctagGCTAACAAGCGTGCCTATGACTTCAGTGCGACTCTCTTCTTGAA
TGCCAAAGACCATGACAGgtaccgccctccctccctccctccttgcctcc
cttcccccctcccttcctgcctttttccctcccttccgtccaccctttct
gaattccaatgcaccatcttccttccctccctccctccctccctccctcc
cacagCCCAACTCCCGGACAAGGGGAGGCAGGGAAGGAAGACGCTGCATC
CCGCCCTCCCTCCCTACCTACCTTTCTCGGTGGGGATTTTCTCTTCTTGG
ATGCAGACGCCCACAGAAACGTTTGTCCGTTACCGGGAAGGCTTGTTACT
TTCACGAGTGGCTTCGAGGTAGGTAGATAGGGAGGGAGGGAGGGAGGGAG
GGAGGGGAAGGGAGGCCCACAGCGCCTCGAGCTCTGCTTGGATCCGATAA
CAATCAGGGCAGGGAAACGCGACGGCGTCTATATGCACATGTGTGTATAG
ATGTACATGTGTGTGTAATTGGTTAGGATTAGGGAGGTATGAAAATGTGT
GATTTGGGGGAAGATGTGCGTGTCGGAATGACGGCCTTGAGGAGGAGGCA
GAGATGTGATGGGGAGGGAGGAAGGGATAGAGGGAGGAAGTTCAGGCAGT
GTCTCGAGCCTGCCTTGACAAGTACGATATCTCCCTCCTATTTCACATTC
CAAAAAAGAAAGCACGGCTCACCTCCCCCTCCCTCCCTCCCTTCCTCCCT
CCATCTCTCCTTCCCTTCATAGAACCCCCACCAGACCCAGCGAATCTCGC
AGGGGCATCGCTACGCATTAACAGCGTGGTTTACCACCGACCCTGAAGCT
GCTTTTGTGGCCTCCTAGAGAGGGAGGCAGGGAGGGAAGGAGGGAGGGAG
GGTGGGATCGGATTTTTTTTCCTTAGGAGTATGTGGGGGATACGGGTGTC
AGAATGACCGGTTTGAGGAGACGAAATTGAAGGAGACAGAGAAAGAAAAG
AAGAAAGGCAGGAGGGGGAGGAGGGGAGGGAGGGAGGGAGGGAGTGAGGG
AATGTGAATAGGCTAGAGTCTTGACTGAGTGAATGGTTGAACGTCTCCGA
TCTATTCGTTTTTTTGTTCGTCAGTTTATTTACTCCTTCAAATATTCATT
TGTGTACAAAAAATGATAATTGATCTTTTATCTTAATTCATTCAAGGTAA
TTATTTGATCAATTATTTTTATTTATCCAATTTATAAAAAATTGTTTGAT
TTCCCGAATGCCGCCCAACCAGGAGGGGCAAGAGAGCAACACAACGGAAA
AGAGACCAGAACTTTAAATTTTTGAATTTAAAAGAGTTAACGGTTCAAAG
AAGCGACACCACTTTAAGAAACAA
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protein sequence of NO30G01110.1

>NO30G01110.1-protein ID=NO30G01110.1-protein|Name=NO30G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MLPLLVPCPHLQEFPFPIHTPYTTATPLLPRKMIRRASSSLVVSPRSATS
TFYNTLPCSSPSSSASLTTKKTFRSSPPPPSLLPHPSSSRSIHTWHAIAS
STQPRGKNGGVPPLIGEELPWSQIEAAAADKIARHTRDGKPSLLLAGPTK
LPSRKQRFSVIHEGIPRRPPPPSYAKTRSEKMHFCDRVITDDVWGEAQCR
QVVEAVESAVRHGLLLPQGPEVSFSPLQPITEEAIGGHAHALLLEALEII
RGAVTHDYHVTRELFCADALLSRLGPVAPDAPSNGLMYWDAHIDKANKRA
YDFSATLFLNAKDHDSPTPGQGEAGKEDAASRPPSLPTFLGGDFLFLDAD
AHRNVCPLPGRLVTFTSGFEVGR*
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Synonyms
Publications