NO30G00990, NO30G00990 (gene) Nannochloropsis oceanica

Overview
NameNO30G00990
Unique NameNO30G00990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1263
Alignment locationchr30:368327..369589 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:368327..369589 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO30G00990 vs. NCBI_GenBank
Match: XP_005853475.1 (hypothetical protein NGA_0442100 [Nannochloropsis gaditana CCMP526] >EKU22885.1 hypothetical protein NGA_0442100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 171.8 bits (434), Expect = 1.600e-39
Identity = 92/150 (61.33%), Postives = 106/150 (70.67%), Query Frame = 0
Query:    1 MSRRLLKHGAEAFKPHFVDGRWQRPLISKRVAARLRKEALANGTYGSLQDTASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAPRVLRPAKLHKRERTREERFQKIETAMAGMDAKVAQHKESLKSLKPKVGIESLYKKIVTEAQKRR 151
            MSRRLLK+G EA KPHFVDGRW+RPLISKRVAARLRKEA+ NG  G  Q +                               V+AP++LRPAKLH RER REERFQKIETAMAGM AK+AQHKES+++LKPK GIE+LYKK+V +AQKRR
Sbjct:    1 MSRRLLKYGGEALKPHFVDGRWERPLISKRVAARLRKEAVMNGRVGPWQPSVQ-------DSNGEKREGTKQVLGWDPAWDTVKAPKILRPAKLHARERNREERFQKIETAMAGMAAKIAQHKESMRALKPKPGIETLYKKVVAKAQKRR 143          
BLAST of NO30G00990 vs. NCBI_GenBank
Match: EWM20708.1 (hypothetical protein Naga_100551g2 [Nannochloropsis gaditana])

HSP 1 Score: 146.7 bits (369), Expect = 5.600e-32
Identity = 92/204 (45.10%), Postives = 106/204 (51.96%), Query Frame = 0
Query:    1 MSRRLLKHGAEAFKPHFVDGRWQRPLISKRV------------------------------------------------------AARLRKEALANGTYGSLQDTASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAPRVLRPAKLHKRERTREERFQKIETAMAGMDAKVAQHKESLKSLKPKVGIESLYKKIVTEAQKRR 151
            MSRRLLK+G EA KPHFVDGRW+RPLISKRV                                                      AARLRKEA+ NG  G  Q +                               V+AP++LRPAKLH RER REERFQKIETAMAGM AK+AQHKES+++LKPK GIE+LYKK+V +AQKRR
Sbjct:    1 MSRRLLKYGGEALKPHFVDGRWERPLISKRVVSKRFISLCFLPPFLPASLPPLISPSSPSFLLCMQRVPDLFIFLNHVAILFVCQAARLRKEAVMNGRVGPWQPSVQ-------DSNGEKREGTKQVLGWDPAWDTVKAPKILRPAKLHARERNREERFQKIETAMAGMAAKIAQHKESMRALKPKPGIETLYKKVVAKAQKRR 197          
BLAST of NO30G00990 vs. NCBI_GenBank
Match: XP_009035045.1 (hypothetical protein AURANDRAFT_71238 [Aureococcus anophagefferens] >EGB10228.1 hypothetical protein AURANDRAFT_71238 [Aureococcus anophagefferens])

HSP 1 Score: 92.0 bits (227), Expect = 1.600e-15
Identity = 56/144 (38.89%), Postives = 77/144 (53.47%), Query Frame = 0
Query:    3 RRLLKHGAEAFKPHFVDG----RWQRPLISKRVAARLRKEALANGTYGSLQDTASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAPRVLRPAKLHKRERTREERFQKIETAMAGMDAKVAQHKESLKSLKPKVGIESLYKKI 143
            R+L KHGA A KP  V G     W+RPL+S+R AA  RK+ALA+GT+G+   +                               V APRVL   KLHKRERTR +RF  +E  +A M  K+A ++ ++ + KP  G+ESL K++
Sbjct:  852 RKLAKHGAAALKPQRVGGPGANPWRRPLLSRRQAADARKQALASGTFGTFDASRG---------------------GWLEAWDAVAAPRVLTAPKLHKRERTRADRFASVEANLADMPKKIAAYRAAVDARKPPPGVESLMKRL 974          
BLAST of NO30G00990 vs. NCBI_GenBank
Match: EJK63269.1 (hypothetical protein THAOC_16084 [Thalassiosira oceanica])

HSP 1 Score: 85.9 bits (211), Expect = 1.200e-13
Identity = 48/140 (34.29%), Postives = 73/140 (52.14%), Query Frame = 0
Query:    3 RRLLKHGAEAFKPHFVDGRWQRPLISKRVAARLRKEALANGTYGSLQDTASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAPRVLRPAKLHKRERTREERFQKIETAMAGMDAKVAQHKESLKSLKPKVGIESLYKKI 143
            R+L +HG EA +P  V+ RW++P++S+RVAA LRK A+ +GTYG+                                   +      RP K HK +RTRE R Q+IE  +A  D K+ + +  +++ KPK GIE ++KK+
Sbjct:   29 RKLCQHGIEALRPQRVNDRWRKPMVSRRVAADLRKAAIRSGTYGTFDAETGIGWDPIWDSPQRRRGVDEILGSNQSKIHSI------RPPKEHKHDRTREARAQQIEALLAQADDKIEEFRLEIEAKKPKPGIEEVFKKM 162          
BLAST of NO30G00990 vs. NCBI_GenBank
Match: XP_002292832.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED90028.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 80.1 bits (196), Expect = 6.500e-12
Identity = 49/140 (35.00%), Postives = 72/140 (51.43%), Query Frame = 0
Query:    3 RRLLKHGAEAFKPHFVDGRWQRPLISKRVAARLRKEALANGTYGSLQ-DTASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAPRVLRPAKLHKRERTREERFQKIETAMAGMDAKVAQHKESLKSLKPKVGIESLYKK 142
            R+L +HG EA +P  V+ +W++P +S RVAA LRK A+  GTYG    +T                                 A + +RP K  KRERTRE R +KIE  +A  D K+ ++++  ++ KPK GIE  +K+
Sbjct:    6 RKLCQHGIEALRPQKVNNKWRKPAVSPRVAADLRKLAIKAGTYGKFDAETGVGWDPRWDSSKAKFTANNDEADSIDILGSNRGAIQSIRPPKETKRERTRETRAEKIEGLLAQADEKIEEYRKEQEAKKPKPGIEEEFKR 145          
BLAST of NO30G00990 vs. NCBI_GenBank
Match: GAX94727.1 (Hypothetical protein PINS_002635 [Pythium insidiosum])

HSP 1 Score: 71.2 bits (173), Expect = 3.000e-9
Identity = 45/139 (32.37%), Postives = 65/139 (46.76%), Query Frame = 0
Query:    1 MSRRLLKHGAE---AFKPHFVDGRWQRPLISKRVAARLRKEALANGTYGSLQDTASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAPRVLRPAKLHKRERTREERFQKIETAMAGMDAKVAQHKESLKSLKPKVGIE 137
            M R L    AE   A KPH VDG+W++PL+S+R  A ++K A  NG  G   +                                 E   V+RP K H  ER   ER +K++ A+A M +K+A+HK+ +K  KP  G++
Sbjct:    4 MQRFLRMSAAEAEAAMKPHLVDGKWKQPLLSRRKVAMVKKHAAKNGLVGQWVE---------------------GQGGWLPAWDRAEKHTVMRPPKGHINERNEFERVKKVQAALAAMPSKIAEHKKIVKQAKPLKGLD 121          
BLAST of NO30G00990 vs. NCBI_GenBank
Match: XP_009530788.1 (hypothetical protein PHYSODRAFT_346993 [Phytophthora sojae] >EGZ13359.1 hypothetical protein PHYSODRAFT_346993 [Phytophthora sojae])

HSP 1 Score: 69.3 bits (168), Expect = 1.100e-8
Identity = 39/125 (31.20%), Postives = 62/125 (49.60%), Query Frame = 0
Query:   12 AFKPHFVDGRWQRPLISKRVAARLRKEALANGTYGSLQDTASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAPRVLRPAKLHKRERTREERFQKIETAMAGMDAKVAQHKESLKSLKPKVGIE 137
            A KP  VDG+W++PLIS R  A ++K A  NG  G+ ++                                 +   V+RP K HK +R   ER +K++ A+A M +K+A+HK+++K  KP  G++
Sbjct:   18 AMKPRLVDGKWKQPLISGRKIAMVKKHAFRNGLVGTWEE---------------------GKGGWLETWDRPQKHHVMRPLKGHKNQRNEFERVKKVQAALAAMPSKIAEHKKAVKQAKPLKGLD 121          
BLAST of NO30G00990 vs. NCBI_GenBank
Match: KUF86838.1 (hypothetical protein AM587_10000671 [Phytophthora nicotianae] >KUF95958.1 hypothetical protein AM587_10010808 [Phytophthora nicotianae] >KUF96501.1 hypothetical protein AM588_10006718 [Phytophthora nicotianae])

HSP 1 Score: 68.6 bits (166), Expect = 2.000e-8
Identity = 39/125 (31.20%), Postives = 61/125 (48.80%), Query Frame = 0
Query:   12 AFKPHFVDGRWQRPLISKRVAARLRKEALANGTYGSLQDTASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAPRVLRPAKLHKRERTREERFQKIETAMAGMDAKVAQHKESLKSLKPKVGIE 137
            A KP  VDG+W++PLIS R  A ++K A  NG  G+ ++                                 +   V+RP K HK +R   ER +K++ A+A M  K+A+HK+++K  KP  G++
Sbjct:   18 AMKPRLVDGKWKQPLISGRKIAMVKKHAARNGLVGTWEE---------------------GKGGWLETWDRPQKHHVMRPLKGHKNQRNEFERVKKVQAALAAMPTKIAEHKKAVKQAKPLKGLD 121          
BLAST of NO30G00990 vs. NCBI_GenBank
Match: OQS05878.1 (hypothetical protein THRCLA_20509 [Thraustotheca clavata])

HSP 1 Score: 67.8 bits (164), Expect = 3.300e-8
Identity = 45/127 (35.43%), Postives = 62/127 (48.82%), Query Frame = 0
Query:   10 AEAFKPHFVDGRWQRPLISKRVAARLRKEALANGTYGSLQDTASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAPRVLRPAKLHKRERTREERFQKIETAMAGMDAKVAQHKESLKSLKPKVGIE 137
            A+A +P  + GRW +P +S R  A ++K A ANGT+GS   T  T                             +   V+RP K    ER  EER +KI+TAMAGMD K+ +H+ +L   KP  G+E
Sbjct:   21 AKALRPSLIKGRWIKPQLSLRQQATIKKVAQANGTFGSW--TPGTGGWLPQWDLP-------------------KKHTVMRPPKGTANERREEERVKKIQTAMAGMDKKIEEHRAALIKAKPIKGLE 126          
BLAST of NO30G00990 vs. NCBI_GenBank
Match: OQR99791.1 (hypothetical protein ACHHYP_04421 [Achlya hypogyna])

HSP 1 Score: 66.6 bits (161), Expect = 7.400e-8
Identity = 43/126 (34.13%), Postives = 62/126 (49.21%), Query Frame = 0
Query:   11 EAFKPHFVDGRWQRPLISKRVAARLRKEALANGTYGSLQDTASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAPRVLRPAKLHKRERTREERFQKIETAMAGMDAKVAQHKESLKSLKPKVGIE 137
            +A +P  V GRW +P++S R  A ++K A+ANGT G+   TA T                             +   V+R  K H  ER   +R +KI+TAMAGMD K+ +H+ +L   KP  G+E
Sbjct:   14 KALRPTLVKGRWIKPMLSLRQQANVKKVAIANGTVGTW--TAGTGGWLPAWDLP-------------------KQHNVMRTPKGHANERREADRVKKIQTAMAGMDKKIEEHRAALLKAKPIKGLE 118          
The following BLAST results are available for this feature:
BLAST of NO30G00990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 16
Match NameE-valueIdentityDescription
XP_005853475.11.600e-3961.33hypothetical protein NGA_0442100 [Nannochloropsis ... [more]
EWM20708.15.600e-3245.10hypothetical protein Naga_100551g2 [Nannochloropsi... [more]
XP_009035045.11.600e-1538.89hypothetical protein AURANDRAFT_71238 [Aureococcus... [more]
EJK63269.11.200e-1334.29hypothetical protein THAOC_16084 [Thalassiosira oc... [more]
XP_002292832.16.500e-1235.00predicted protein [Thalassiosira pseudonana CCMP13... [more]
GAX94727.13.000e-932.37Hypothetical protein PINS_002635 [Pythium insidios... [more]
XP_009530788.11.100e-831.20hypothetical protein PHYSODRAFT_346993 [Phytophtho... [more]
KUF86838.12.000e-831.20hypothetical protein AM587_10000671 [Phytophthora ... [more]
OQS05878.13.300e-835.43hypothetical protein THRCLA_20509 [Thraustotheca c... [more]
OQR99791.17.400e-834.13hypothetical protein ACHHYP_04421 [Achlya hypogyna... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR073ncniR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR097ngnoR097Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00990.1NO30G00990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674661gene_10210Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100551g2gene9698Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00990.1NO30G00990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00990 ID=NO30G00990|Name=NO30G00990|organism=Nannochloropsis oceanica|type=gene|length=1263bp
AATGGGTGTCCGTAATGCTAGACCAATCTAGCCAGTCTTGACTTTTTATT
TGGGGCCACTGAGGTGTGTAGGTGTGGATGATTGGTCCGGGTGGCGGGCG
AGCAAGCAATGCCGTTCCTCTCCTCTCCTCCTGATCATCATCCCCTTTCC
CCCCTCCTCTTCCTCCACACCAACGCACAGCCGCAGCAGCCAGCCACTGC
AGAGAAGCGGCAGCACAAACACAGACTTTAAGGGCAATAGGAAAGGACGA
CGCAGCCCCACCATCACCTTTACGCGTTATTGGCCCACACCAGTCCACCC
CCACATCTACATCCACACTACGCAAGATGAGTCGTCGCCTGCTCAAACAC
GGCGCCGAGGCATTCAAACCACATTTTGTCGATGGACGCTGGCAGCGGCC
CCTCATTTCTAAGCGCGTGgtacgtctcctctccattctcgcccactttc
cctcactccctccttcggaagggatctatccatgtctgtgcagccctttt
gagcccccctctccatcttattctttcatccttcctctctcccatcttct
ctgcctctttccatgtcaagcatcctagttccaagtccaaatggcgtcct
ctctcttttttctgtgacaagcattccttgatctctccctccctctctcc
ctctcctctcccaactcacccatccccaattatcactttccctcacagGC
AGCACGCCTGAGGAAAGAAGCTCTGGCCAATGGGACCTATGGAAGTCTTC
AAGATACCGCCTCAACTGCCGGCAGTGTCAGCAGCAGCAGCAGCAGGGAT
GGAGGGCGGGAGGGAGGGAGGGTAGGAGGCTGGGATCCGGCTTGGGACCG
AGTGGAGGCGCCACGGGTGTTAAGGCCAGCAAAACTGCACAAACGAGAGA
GAACTAGAGAAGAGAGgtacgggagagagagttaaggggagggtgttgtt
gaatactgaaggatacaactagtcaggcgcctcaagtcatgttagtgaac
ctctcatccaccctcccttccctttctttttctcttcctccttctcttcc
tcagGTTTCAAAAGATTGAGACGGCCATGGCAGGAATGGATGCGAAGGTG
GCCCAGCACAAAGAGAGCTTGAAGTCCCTCAAGCCGAAAGTGGGAATCGA
GTCATTGTATAAGAAGATTGTGACAGAAGCACAGAAACGACGATAGGAGA
CGAAGAGCAAAGGAGGGGGAAATGGAATTTGTGAGACAAAAAGGAAATAT
GCTCGAATCGTTA
back to top

protein sequence of NO30G00990.1

>NO30G00990.1-protein ID=NO30G00990.1-protein|Name=NO30G00990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MSRRLLKHGAEAFKPHFVDGRWQRPLISKRVAARLRKEALANGTYGSLQD
TASTAGSVSSSSSRDGGREGGRVGGWDPAWDRVEAPRVLRPAKLHKRERT
REERFQKIETAMAGMDAKVAQHKESLKSLKPKVGIESLYKKIVTEAQKRR
*
back to top
Synonyms
Publications