NO30G00880, NO30G00880 (gene) Nannochloropsis oceanica

Overview
NameNO30G00880
Unique NameNO30G00880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2408
Alignment locationchr30:320431..322838 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:320431..322838 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO30G00880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR051ncniR051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR097ngnoR097Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00880.1NO30G00880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00880.1NO30G00880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00880 ID=NO30G00880|Name=NO30G00880|organism=Nannochloropsis oceanica|type=gene|length=2408bp
ATGGCTCGGGAGGGAGGGAGGGAGGGAGGGAGCGAGGGAGAAGAGAGTAT
CAGCAGCAGCCGgtgagtatttgacattccatcgatctgttttcgcctcc
ctccctccctccctccctccctccctccctctcaccacccaccttcttcc
ctgaaccctccctccctctcttcctccccccctccctccctcccttacta
gGCGGGATGCCCTGATCTCCCTCCACAGACTCGCACACACCATCGTCCAT
ACCTCTTCCTCCTCCTCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCCCCATCATCAATGCCCTAGGAGGGAAGGAGGGCGGGA
AGAAGGGAGGGGGGGAGGACAAGGCACCCTATGCGTTGTGGTTTATGACC
CACGAGCTGGTCATGCTGGCGGCGGTGGTCCGACAAgtgagggagagagg
gagggagggagggagggagggctggaaggagggagggcggaagtcgacaa
gtgtgaaaaggttgtttatctcactctcacctctccctccctccctccct
ccttccgacactcccatcttcccttacccattcagGTCTCTCGATGCGCC
ATTCAATGCCTCGCGCGTCACGACCTCCTCCACCCCCTCCCTCCCTCCCT
CCCTCTCTCCTCCTCACCTTTTCCCTCCTCCTCAGAGGGCAGCATCGTAA
CTTTCTCCCTCTCCCCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTTCCTCCCTCCACTGCCATCCCGACGCAAGAGCAGCATAAGTAT
GACTGCTCCTTCCCGTTCCCACTCCACCTCTTCCTTCTCCTCCTCCCTTT
CCTCTTCGCTCTTCTCCTTCCTCGCTCCCCTTCCCCCCACCTCTGAAAAG
GAGGGTGAGACCGAAGATGAGACAGGGAGGGAGGGAGAGAGAGAAGGAGG
GGGGGCCTTCGTCATGGATGACAAATCCCTGGAAGGGAGGGAGGACGAGA
AGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGATGCGGGCG
GTGCCGGCGCTGCTTATGTCAACTTCGGCGAGGTGCGATTTGGCTAATGC
CCTTTTGGATCTATATGAAGgtgagggagggagggagggagggagggagg
gaggggtggataggagcaggggatggcaggtgggagtgtcagaatgacgg
atggggttggccggacatgatggggagggagggagggaaggagggaggga
ggacaagaagctgttgttgacgaccctacacctatcctattactcacagG
GACATATGGCTTGGGCTTTAATAAAACGAGGGATGACCCCCGGCTGTGGG
GAGAAGTGGAAGAGgtgcgtgttgcctcgattcctccctccctccctccc
tccctccatcgttctgtatagacttcattttaggactaatatgcacgact
tccctcccgccctccctccctacctacctacctctgtcctgccctgcttc
cctttttcgattctttcctcgctcgctcgctccctccatccctcctttcg
agcagTGGGAAGACAGCTGGGCACGCCCCCTCCCCCCGCTCCTCGTCCAT
CTCCCTCTCCCTCCTTCTCGTCCTCCAGTCGCAGAGGGAGGAGGGAGGGA
CAACGGAAGTGAAAAAGGAGCAGGAGGAGGAGGAGGAGGGGGAGGAAGAG
GAGGAGAAGGAGGAGGCGAAGGAATAATGGACGAGACGGCCGTCGTCACC
CGGAGGGTAATCCGgtaagaagagggagggagggaggaagggagcaaccc
attaccatcacgtttccatctcctttgactcctcctatcctccctcttcc
cctccctccctccctccctccctccctccttccctccctccctcagGTAC
CTTCTCCGTTCCCTGGAAGTGCAGGACGAGCTTTTGTCCATTGGCGGAAT
CCCACGCTCCCCTTCCTCCCTCCCGTCCTCGTCCTCTCCCATCATGTCCT
TCCCTCTTTCCGACTCCTCCTCGTCCTCCCTCCCCCTCTCCCTCCCTCCC
TCTTCCTCTTCCCACCCTCTCCCGTATCATCACGAAAAGAAAAGCTCGGC
CTCCTCGGTGGAGAGAGGGAGGGAGGGAGGGAGTAGTAGGATGAGCAACA
GCCATCCTTTGCCTCCTGCTCTCGAAATAAAAAAGGAGACATTATCAGGA
GGAGGGAGGGAGGGAGGGAGGGAGGAAGCGGAGGAGGAGGTCAAGGGTGA
GAAAGGGAGGAGGAGTCGGGCGGGAAGTGCGTTGATGACAGTGTGAGAAG
AGGGAAGGAAGGAAGGAGGGAGAGAAGGAGAGGAAGGGGGCCGGGTTCAT
CACCCTGCCCTCCAGCGTCCATTCGGGAAAAACACAGGGGCAGGAGGTTT
ATTGGCGC
back to top

protein sequence of NO30G00880.1

>NO30G00880.1-protein ID=NO30G00880.1-protein|Name=NO30G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=502bp
MAREGGREGGSEGEESISSSRRDALISLHRLAHTIVHTSSSSSSSPSSSS
SSSSSSSSPIINALGGKEGGKKGGGEDKAPYALWFMTHELVMLAAVVRQV
SRCAIQCLARHDLLHPLPPSLPLSSSPFPSSSEGSIVTFSLSPPSSSSSS
SSSSSSFLPPLPSRRKSSISMTAPSRSHSTSSFSSSLSSSLFSFLAPLPP
TSEKEGETEDETGREGEREGGGAFVMDDKSLEGREDEKEGGREGGREGER
EMRAVPALLMSTSARCDLANALLDLYEGTYGLGFNKTRDDPRLWGEVEEW
EDSWARPLPPLLVHLPLPPSRPPVAEGGGRDNGSEKGAGGGGGGGGRGGE
GGGEGIMDETAVVTRRVIRYLLRSLEVQDELLSIGGIPRSPSSLPSSSSP
IMSFPLSDSSSSSLPLSLPPSSSSHPLPYHHEKKSSASSVERGREGGSSR
MSNSHPLPPALEIKKETLSGGGREGGREEAEEEVKGEKGRRSRAGSALMT
V*
back to top
Synonyms
Publications