NO30G00870, NO30G00870 (gene) Nannochloropsis oceanica

Overview
NameNO30G00870
Unique NameNO30G00870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2878
Alignment locationchr30:316765..319642 +

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Properties
Property NameValue
DescriptionGalactosyl transferase gma12 mnn10 family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:316765..319642 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016757transferase activity, transferring glycosyl groups
GO:0016757transferase activity, transferring glycosyl groups
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR008630Glyco_trans_34
Homology
BLAST of NO30G00870 vs. NCBI_GenBank
Match: EWM30575.1 (galactosyl transferase gma12 mnn10 family protein [Nannochloropsis gaditana])

HSP 1 Score: 196.4 bits (498), Expect = 2.500e-46
Identity = 105/284 (36.97%), Postives = 153/284 (53.87%), Query Frame = 0
Query:   65 FEYLRPTWKTVYDFLCYCEDFDSSAQEFTDSI-LGPLVSLFNDRKFDISEATDALNEYEALKSKSQRRLPVEPST--CIPWVDLDQP---DRPPRIAMMTIAIFPKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEARILLEEGVPVSLADKQEYCHRHGYDFYAISETPRGRPAPWMKIPAALSLLSQQYDWVILVDIDAVIIDHSVKLEEFTDPRYDTIIGVDRHGVNTGVLFLRNTVWSRLFLAEAWTLTDEPLSAIWWEQASIRSVMASTG 343
            F++LRP W+T   F+  C +FD S  +  + + +  + S+F         AT ALN+Y  +  +++ + P   +T  C+PW+  D P     PPRIA+ T++                                           A  +    V +SL DK++YC  HGYD + I +T   R A W K+P  LSLL  QYDWV+ +D D VI DHS++LEEF DP +D I+G+D +GVN+GV FLRN+ WS++ L EAWT+T+E +S IWWEQA+I  ++ S G
Sbjct:   96 FQFLRPQWQTFAGFIDRCAEFDGSEHDPNEKVRVKRIYSIFASPGPSFDAATTALNDYAHVAEENREQPPNRRATFSCLPWIHADAPVLMHGPPRIAIATLS------------------------------------------TADYVNNSAVSLSLIDKKKYCDHHGYDLHIIRKTSTKRAAAWSKLPGILSLL-DQYDWVVSLDADTVIYDHSIRLEEFLDPHHDLIVGLDGNGVNSGVFFLRNSTWSKVLLTEAWTITNEKMSNIWWEQAAIMRLLQSEG 336          
BLAST of NO30G00870 vs. NCBI_GenBank
Match: XP_007515074.1 (Subunit of Golgi mannosyltransferase complex (ISS) [Bathycoccus prasinos] >CCO15314.1 Subunit of Golgi mannosyltransferase complex (ISS) [Bathycoccus prasinos])

HSP 1 Score: 94.0 bits (232), Expect = 1.700e-15
Identity = 48/115 (41.74%), Postives = 68/115 (59.13%), Query Frame = 0
Query:  215 SLADKQEYCHRHGYD-FYAISETPRGRPAPWMKIPAALSLLSQQYDWVILVDIDAVIIDHSVKLEEFTDPRYDTIIGVDRHGVNTGVLFLRNTVWSRLFLAEAWTLTDEPLSAIW 329
            S+A+KQ Y  RHGYD  Y        RPA W K+ A    L  +YD+++ +D+D VI++  V+LE+  D  YD I+  DR+G+N GV  +RNT WS  FL E W+ +    +A W
Sbjct:  237 SVANKQAYADRHGYDMIYDEKIVDSSRPASWSKLLAMRKYL-PKYDFLLYLDVDTVIVNFDVQLEDIVDYEYDQILAADRNGLNCGVWMIRNTEWSLWFLDEMWSQSQLVGAAPW 350          
BLAST of NO30G00870 vs. NCBI_GenBank
Match: XP_007510461.1 (predicted protein [Bathycoccus prasinos] >CCO17994.1 predicted protein [Bathycoccus prasinos])

HSP 1 Score: 93.6 bits (231), Expect = 2.300e-15
Identity = 44/108 (40.74%), Postives = 65/108 (60.19%), Query Frame = 0
Query:  215 SLADKQEYCHRHGYDFYAISET-PRGRPAPWMKIPAALSLLSQQYDWVILVDIDAVIIDHSVKLEEFTDPRYDTIIGVDRHGVNTGVLFLRNTVWSRLFLAEAWTLTD 322
            S+A+K+ Y   H YD   ++ET    RP  W KI A    L  +Y W++ +DID +I++  ++LE+  D  YD +IG D +G+N+GV F++NT W R FL E W   D
Sbjct:  483 SVANKRAYAKIHEYDLIFVTETLDTTRPMAWSKILAVQRYL-PRYKWLLFLDIDTLIMNPDIRLEDIADDNYDQVIGADHNGINSGVWFVKNTRWMRWFLTELWAQED 589          
BLAST of NO30G00870 vs. NCBI_GenBank
Match: XP_003056782.1 (hypothetical protein MICPUCDRAFT_56194 [Micromonas pusilla CCMP1545] >EEH58427.1 hypothetical protein MICPUCDRAFT_56194 [Micromonas pusilla CCMP1545])

HSP 1 Score: 91.3 bits (225), Expect = 1.100e-14
Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = 0
Query:  215 SLADKQEYCHRHGYDFYAISE-TPRGRPAPWMKIPAALSLLSQQYDWVILVDIDAVIIDHSVKLEEFTDPRYDTIIGVDRHGVNTGVLFLRNTVWSRLFLAEAWTLTD 322
            S A+K+ Y  +HGYD   ++E     RPA W KI      L  +Y+WV+ +D+D +I++ +VKLE+  D   D +I  D +G+N+GV  ++N+ W   FL E W  TD
Sbjct:  228 SAANKRRYAAKHGYDLIVVTEVADASRPAAWSKILEVRKHL-PKYEWVLFIDVDTLIMNPNVKLEDIADDSVDQVIAADHNGINSGVWLVKNSRWMMWFLDELWAQTD 334          
BLAST of NO30G00870 vs. NCBI_GenBank
Match: XP_002505013.1 (hypothetical protein MICPUN_62693 [Micromonas commoda] >ACO66271.1 hypothetical protein MICPUN_62693 [Micromonas commoda])

HSP 1 Score: 91.3 bits (225), Expect = 1.100e-14
Identity = 47/104 (45.19%), Postives = 60/104 (57.69%), Query Frame = 0
Query:  215 SLADKQEYCHRHGYDFYAISE-TPRGRPAPWMKIPAALSLLSQQYDWVILVDIDAVIIDHSVKLEEFTDPRYDTIIGVDRHGVNTGVLFLRNTVWSRLFLAEAW 318
            S+A+KQ Y  RHGYD    SE     RP  W K+ A    L   YD++  VD+D +I +  VKLE+  D  YD I+  DR+G+N GV  +RNT WS  FL E W
Sbjct:  215 SVANKQAYADRHGYDVIVDSEIIDESRPTSWSKLLAMRKYL-PYYDYLFYVDVDTIIANVDVKLEDIVDYGYDQILAADRNGLNCGVWLIRNTPWSLWFLDEMW 317          
BLAST of NO30G00870 vs. NCBI_GenBank
Match: WP_098038876.1 (DUF273 domain-containing protein [Estrella lausannensis] >CRX39019.1 putative secreted protein [Estrella lausannensis])

HSP 1 Score: 87.8 bits (216), Expect = 1.200e-13
Identity = 49/133 (36.84%), Postives = 65/133 (48.87%), Query Frame = 0
Query:  210 EGVPVSLADKQEYCHRHGYDFYAISE---TPRGRPAP--------WMKIPAALSLLSQQYDWVILVDIDAVIIDHSVKLEEFTDPRYDTIIGVDR---HGVNTGVLFLRNTVWSRLFLAEAWTLTDEPLSAIW 329
            E V      K+ YC +HGYDF   SE      G PAP        WMK+P     LS  YDWVI  D D++ ++  + LE + D  YD + G        +NTG +F++   WSR FL E WT ++E     W
Sbjct:   69 ETVKFGTRSKELYCQKHGYDFIIGSEKLYECDGHPAPNKEKLSIHWMKVPMLARFLS-DYDWVIWTDADSIFLNPDITLESYLDDSYDILFGTHHLTCQSLNTGHIFVKCNQWSRDFLNEWWTYSEEYQEGTW 200          
BLAST of NO30G00870 vs. NCBI_GenBank
Match: XP_003084369.2 (Galactosyl transferase [Ostreococcus tauri] >CEG01932.1 Galactosyl transferase [Ostreococcus tauri])

HSP 1 Score: 87.4 bits (215), Expect = 1.600e-13
Identity = 43/104 (41.35%), Postives = 62/104 (59.62%), Query Frame = 0
Query:  215 SLADKQEYCHRHGYDFYAISET-PRGRPAPWMKIPAALSLLSQQYDWVILVDIDAVIIDHSVKLEEFTDPRYDTIIGVDRHGVNTGVLFLRNTVWSRLFLAEAW 318
            S+A+KQ Y   HGYDF   ++   R RP  W K+ A    L  +YD+++ VD+DAV+++    LE+  D  YD ++  D +GVN GV  +RNT W+  FL E W
Sbjct:   62 SMANKQAYADAHGYDFIVDADVIDRSRPTSWSKLLAMRKHL-PRYDFLLYVDVDAVVMNPETGLEDIVDFDYDQVLAADSNGVNCGVWLVRNTPWTLWFLDELW 164          
BLAST of NO30G00870 vs. NCBI_GenBank
Match: XP_001421311.1 (predicted protein [Ostreococcus lucimarinus CCE9901] >ABO99604.1 predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 85.5 bits (210), Expect = 6.200e-13
Identity = 44/116 (37.93%), Postives = 64/116 (55.17%), Query Frame = 0
Query:  207 LLEEGVPV----SLADKQEYCHRHGYDFYAISE-TPRGRPAPWMKIPAALSLLSQQYDWVILVDIDAVIIDHSVKLEEFTDPRYDTIIGVDRHGVNTGVLFLRNTVWSRLFLAEAW 318
            L ++GV      S+A+KQ Y   HGYD     E   R RP  W K+ A    L   YD+++ VD+D +I++   KLE+  D  YD ++  D++G+N GV  +RNT W   F+ E W
Sbjct:   19 LCDDGVEAICAQSMANKQAYADYHGYDLIVDEEIIDRNRPTSWSKLLAMRKYL-PDYDFMLYVDVDTIIMNPEKKLEDIVDYNYDQMLAADKNGLNCGVWMVRNTPWMLWFIDEMW 133          
BLAST of NO30G00870 vs. NCBI_GenBank
Match: XP_003060600.1 (hypothetical protein MICPUCDRAFT_59967 [Micromonas pusilla CCMP1545] >EEH55369.1 hypothetical protein MICPUCDRAFT_59967 [Micromonas pusilla CCMP1545])

HSP 1 Score: 83.6 bits (205), Expect = 2.300e-12
Identity = 43/104 (41.35%), Postives = 57/104 (54.81%), Query Frame = 0
Query:  215 SLADKQEYCHRHGYDFYAISE-TPRGRPAPWMKIPAALSLLSQQYDWVILVDIDAVIIDHSVKLEEFTDPRYDTIIGVDRHGVNTGVLFLRNTVWSRLFLAEAW 318
            S+A+KQ Y   HGYD     +     RP  W K+      L   YD++  VD+D VI +  VKLE+  D  YD I+  D++G+N GV  +RNT WS  FL E W
Sbjct:  178 SVANKQAYADHHGYDVIVDGDLIDESRPTSWSKLLVMRKYL-PYYDFLFYVDVDTVITNVDVKLEDVVDYGYDQILAADKNGLNCGVWLIRNTPWSLWFLDEMW 280          
BLAST of NO30G00870 vs. NCBI_GenBank
Match: GBG34405.1 (Xyloglucan 6-xylosyltransferase 1 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 82.8 bits (203), Expect = 4.000e-12
Identity = 38/107 (35.51%), Postives = 63/107 (58.88%), Query Frame = 0
Query:  215 SLADKQEYCHRHGYD-FYAISETPRGRPAPWMKIPAALSLLSQQYDWVILVDIDAVIIDHSVKLEEFTDPRYDTIIGVDRHGVNTGVLFLRNTVWSRLFLAEAWTLT 321
            S+ +KQ+Y +RH Y+   A  E  + RPA W K P  L     +YD+++ VD DA+ ++ ++++E+  D  +D     D   +N+GV  +RNT W+  +L EAW+ T
Sbjct:  175 SIKNKQDYANRHSYEVIVADDEIDKSRPAAWSKFP-ILEKYLPEYDYLMWVDADAIFMNMTIRVEDIVDAEHDLFFARDEGDINSGVFLVRNTDWAMWWLKEAWSQT 280          
The following BLAST results are available for this feature:
BLAST of NO30G00870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30575.12.500e-4636.97galactosyl transferase gma12 mnn10 family protein ... [more]
XP_007515074.11.700e-1541.74Subunit of Golgi mannosyltransferase complex (ISS)... [more]
XP_007510461.12.300e-1540.74predicted protein [Bathycoccus prasinos] >CCO17994... [more]
XP_003056782.11.100e-1438.89hypothetical protein MICPUCDRAFT_56194 [Micromonas... [more]
XP_002505013.11.100e-1445.19hypothetical protein MICPUN_62693 [Micromonas comm... [more]
WP_098038876.11.200e-1336.84DUF273 domain-containing protein [Estrella lausann... [more]
XP_003084369.21.600e-1341.35Galactosyl transferase [Ostreococcus tauri] >CEG01... [more]
XP_001421311.16.200e-1337.93predicted protein [Ostreococcus lucimarinus CCE990... [more]
XP_003060600.12.300e-1241.35hypothetical protein MICPUCDRAFT_59967 [Micromonas... [more]
GBG34405.14.000e-1235.51Xyloglucan 6-xylosyltransferase 1 [Aurantiochytriu... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR051ncniR051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR097ngnoR097Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00870.1NO30G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|546885gene_9222Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00870.1NO30G00870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00870 ID=NO30G00870|Name=NO30G00870|organism=Nannochloropsis oceanica|type=gene|length=2878bp
ATGTCGACCAGGATAACCGTGGTCGACATAATCAAGGCCTTTCGAAGATT
TTGGTTTATTACCCTGGTTATAGGACAAATAATATTCTTTACATGCTTCT
TCTATTTCTTCGCCGGCGATGGGCAGCTGGGGAATCCGACGAATCTCAAC
ACCTACCCCGAACCCTCTTCTTCCCAACGTGATATCAGTAAATTTGAGTA
TTTGCGTCCAACCTGGAAAACTGTTTATGACTTTCTTTGCTACTGTGAAG
ATTTCGACTCTTCCGCACAAGAGTTTACGGACTCCATCCTTGGACCGTTG
GTCTCCCTCTTCAACGACAGAAAGTTCGACATCTCTGAAGCGACTGATGC
TCTCAATGAATATGAAGCCTTGAAATCGAAGTCACAGCGAAGGCTGCCGG
TAGAACCCTCCACTTGTATACCATGGGTTGATCTTGATCAGCCGGACCGT
CCACCTCGCATCGCGATGATGACAATTGCCATCTTTCCGAAAACCCAAAC
AGAAAGTGAGAAGGATGGGGAAGGTGAACAAGAGGAAGGAGTAATAGGAG
ACGGAAAAAAAGAAGAAGATGAAGGAGAAGGGAGAGAAGAAAAAGCAGAA
GTGGAGGAAGCGCGAATTCTTCTTGAAGAAGGGGTGCCAGTGTCTCTGGC
CGACAAACAAGAGTACTGTCATCGACACGGCTATGACTTTTATGCCATAT
CTGAAACTCCCCGGGGCCGGCCTGCGCCCTGGATGAAGATTCCCGCAGCT
TTGAGCTTGCTTTCCCAACAGTACGACTGGGTGATTTTGGTTGACATAGA
TGCCGTCATCATTGATCATAGCGTCAAACTTGAAGAATTTACGGACCCGC
GGTACGATACAATCATTGGAGTTGATCGTCACGGCGTTAACACTGGAGTC
CTCTTTCTTCGCAACACCGTGTGGAGTCGGCTTTTTCTGGCAGAGGCCTG
GACCTTGACAGACGAGCCATTGAGCGCGATCTGGTGGGAGCAGGCCAGTA
TAgtatggttgataaaggcagagggggttcgaaatcatgtaaaattatgt
ccacaaactcactttaactcatatatacgtggacgtagcttgaaggacag
ctttattatccattttgctggcagcagcaaaaaggaaaaatggctaaatg
tgctgaaatattacggcctacgaaaaaaaatgctttcacaagatggcatg
acatgacatgactattttgaactagcgaatggtgtttggttttaaattcc
aacgcattcccggcattaaggcgcgacaaaaataaaaataaatattattg
aataagggttatagcgtggaggctttgacgtttatttccacagaaaaggg
caatttggactgtgagatttacctccagtgagaagcacatgatatcctgt
ccattttatggacatgagaaacgaaagggaaaatataataaatcagtttc
atttattaccaaaccaacccggaggagagcatccgcgccctttcattgat
gatgagcacacacaaagaaagaagcctggtcaccttttcgcattacaaag
tacaggcgtgcgcaacatcactccaacttctgctactgacggtagagata
caaccgagtggcgcgcatgcaaaggaaaacaacatcctcaactccagttg
ttgccgccatcgcccacttctgtgggcgagcaacacgcatcccgacagac
gagacagcaacgcacatggcaaattagacccatgatgtgttggtgttcac
ggcagttgttattctttgtcggtgactgtagtggctgccttggctaggac
tgaagtggtcgctacaccattggctttgcttcacctctcttgcgtcgcct
cgcccatctccctacatcaccgttcccttcctctctccctctccctttcc
ctcgcttcttgcacacagCGCAGCGTCATGGCGTCCACGGGAAGTAATGC
ATCCTTTTTCACCCGGCGTCTTACGCCCAGTGTCCTACCCAAGTCACTCG
GAGGAGCGGGAGAGGGTCCAGCGAGACAACCTGGTTTCTCCCGGTCACCG
GCAGGCCACAGTCAGGCGCAGGCGAGCTGTGCAACGGTGCTGTATCGCGA
ACAGgtaaaatcaaaagggcaagaaggcaggagagggatgagggagtttt
tattccagtccctcagacaaaataaatcgtggtcaattcccatgcatcct
attcattgccccctccctccctccctgcctccctccctcctcccatcctc
tcaacagCGCGCCGCCATGCTCCAAGAAAAAGCCTCCTCCTCTCCCCCCT
CCTCCTCTTCCTCCTTCCGTCCTTCCGTTTCTTTCTCTTCTTCCTCCTCA
TCCTCCCTCCCCAACAACCACATTCACACTCCTTCTACCCTTCCGCCCTC
TTCACCGCCCATGGCACCCTTGGCTGTCGCTGCTGCTGCCATCGCCCACA
CCCACTCCCGCTCCGCTGCCGATCTCCACCGGGAACGTCGACAAGCCCTG
AAGGACAGTGGAGTGCCCCTCCACGCCGTCACCCCTGCTTTGCTCCTCTC
CTCGGCCGCCGCGGGCAACAACCGCGTGCCGACCAGGCAAGGGAGGGAGG
GAGGGAGGGCGGGCCTGAAGGTATTGATGGGAGGAGCAGTGCTGGTGGGG
GCGGCTGGAGTGGTGTACATGGGAGGGGTCGAAGAAGCAGCGGCTGCAGC
AACAGCAACGGGGGTAGTGTTCCCCTTCTGGTCTTCGTCCTCCTCCTCCT
CTTCAGCCGGGGCCTCGACCTCCCTCCCTCCCTCCTCCTCCTCCTCCTCC
CCTTTGGGCGTACCTGCGTTTGACTCTTCCTTGTCGTCGTCCCAGCCCGT
GTGGCTGCAACGGCCGCGGGGGTCTTGA
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protein sequence of NO30G00870.1

>NO30G00870.1-protein ID=NO30G00870.1-protein|Name=NO30G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=603bp
MSTRITVVDIIKAFRRFWFITLVIGQIIFFTCFFYFFAGDGQLGNPTNLN
TYPEPSSSQRDISKFEYLRPTWKTVYDFLCYCEDFDSSAQEFTDSILGPL
VSLFNDRKFDISEATDALNEYEALKSKSQRRLPVEPSTCIPWVDLDQPDR
PPRIAMMTIAIFPKTQTESEKDGEGEQEEGVIGDGKKEEDEGEGREEKAE
VEEARILLEEGVPVSLADKQEYCHRHGYDFYAISETPRGRPAPWMKIPAA
LSLLSQQYDWVILVDIDAVIIDHSVKLEEFTDPRYDTIIGVDRHGVNTGV
LFLRNTVWSRLFLAEAWTLTDEPLSAIWWEQASIRSVMASTGSNASFFTR
RLTPSVLPKSLGGAGEGPARQPGFSRSPAGHSQAQASCATVLYREQRAAM
LQEKASSSPPSSSSSFRPSVSFSSSSSSSLPNNHIHTPSTLPPSSPPMAP
LAVAAAAIAHTHSRSAADLHRERRQALKDSGVPLHAVTPALLLSSAAAGN
NRVPTRQGREGGRAGLKVLMGGAVLVGAAGVVYMGGVEEAAAAATATGVV
FPFWSSSSSSSSAGASTSLPPSSSSSSPLGVPAFDSSLSSSQPVWLQRPR
GS*
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Synonyms
Publications