NO30G00810, NO30G00810 (gene) Nannochloropsis oceanica

Overview
NameNO30G00810
Unique NameNO30G00810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3629
Alignment locationchr30:296020..299648 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:296020..299648 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO30G00810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR051ncniR051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00810.1NO30G00810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605751gene_9231Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00810.1NO30G00810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00810 ID=NO30G00810|Name=NO30G00810|organism=Nannochloropsis oceanica|type=gene|length=3629bp
TGAGATACGCTACGTATTTCAGGTAACCCCAAAACCTGAATAAAAAGATG
GTCAAGAGACATGATTCTTCGATCATGTTTGCTCCTTTTATGCGAATGGC
CACGGATTGTTTGTCATCGATATTTTCATTCATGGCTTCACTGTCATGCC
GGTATGACACCGAGAATTATTACAGGGCAGGGGGTTGCGGGGTTATGTTC
TCCCAACGTACAGCACCCTCCGTGTCTGCGCCCTCTCCCTCACAACGCTC
TCATAAAGACACGCAAGACCAGCCATTATCACATTATCATCGTGCTTAGG
ATGTTATTTGTGTTGCCATGACTATTTCACGCGCCAAATGACAAGAAGTG
AGTGTTGAGGAGAAACAACTTCGAATTGAATTGCGTGCCATAGCTCGCTT
CTCGACTCGCTTTGGGTCTCAGTCAGCCAGTCGTGTCCCCCCCAAAGACA
AAATAAAAGTATGCCTCAACGCTCATCATCAAGCAATTTCAGACGTCGCA
GACCCAATTACTCCTCTTCCTTTGCTTTGGGTGTCTCCCTATCGCCCACT
GCCCTGCTCCTTCCACAGGTAGCGGCACCATCGTGAGCAAGAAAGCAGCA
GCCCATGCACATTTTGGTTGCCACGGTCAATTCCATTTCGAATTGAGACA
AATGCAGCAGCAGCAACAGCCGCCGCCGCCGCCACCTGCCTCCTCTTATA
GCATTAGCAACAACAGCAGCAGCCATACTGATGAACTCGTCCAAGAAGAC
AAAGAAGAGGGCGTGGTTGATGCTCGAGCCCCTCCACCCATGCCACCCCG
GCCTTGTTCCCCTCCTCCCCTCCCTCCTCTCTCGACCGAGTCTGTCTCAG
CCACAGTCGTCATCCTCCCCCCTCCCTCCCTCCCTCCCTCCTTTCCTCCA
TCCTCCTCCTCCTCCTCCTCCTTCTTTCCTTCCCTGGCAATGGCGGCCTT
CACACGGGGGAGAGGCAGAGGAAGAAGGGGAAGAGGGAGTGAAGGAGAGA
GGGTAGTGGAAGACTATCAACTTCCCACAGCTCTTTATGATCCgtgcgta
tggataagaagggaagggagggagggagggagagaggaatgtccgtgcat
gacaaaagtcgcttatccctccccctccctccctccctccctcccttcct
tccctccctccctccctccctccctccctctccagCACGGCCTACGCCCC
TACGCACGTCACCCTTCTCGACGCCAATGGGCTTCCCTTCGCCCCCTCCT
CCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCATCCTCTTCGGCCCATAAT
ACCACCACTGCTGAAGCTGCTGCCACTGCTGCTGCTGCCACTGCTGCTGC
TGCCACTGCTGCTGCAGCGGGGACCAGAGGGGATGCGTCTTCCTCCTCCT
CCTCCTCGTCATCTGATTCCATTTCTTCCTCGATGGCTACCTCCAGTGCT
CCTTTAGTACCATCTGACCGAGGAGGTGGCGGGGGGGGAGGAAGGGAGGG
AAGAACGAGAGGGAGGATATCGCAAAgtgagtagactgagagggagagag
ggagaaagggagggagggagaactttctttccgacgtcatcttcctattt
attttcctcatctttttcaatatcccagaattaaaatcatcaatccctcc
ctccctccctccctccctccctccctccctttttctttttcgtcctgcct
tttctccccttctccctccctccctcccttcccatgactcctattgtgtt
tgtttgcttaagcctgtcattccgacgcccatatcccttatctcccctac
acactttcccacaaaatttctcctgacctttcttctttccctccctctct
ccctcccctccctccctccctccctccctccctccctccctcccttcaag
CTTTCTCTCGCCTTCTCTCCTCTTCTTCTCATCGAGGGCTCATCATGGTC
GCCGTCCCTCTCTCCGTTGAGCATCATTATGGGAGGGAGGGAGGGAGGGA
GGAAGGGCATGGAGGAGGGAGGCGACAGGGAGTCTCTTCGCTGGAGGAGG
CAGAGAGGGGGGAAGGGAGGGAGGAAGAGCGTCAACAGCATCATCACCAT
CATCACCATCACCACCATCATCATCGCCCATATGTACATGAAGAGGAGGG
GAGGGAGGGGAGAAGGAGAGAAGAGGAGGGGGAGGAGGAGGAAGATCAGC
AGCAGCAGTCCACAAGCGAGGACGGGAATGAGGGAGAGGAGGGGAGAAGA
GGAGGAGGAAGAGGAAGGGGAGGAGGAGGAAGAGGCATCCTCCCTTCCGC
CCTGCCCTCCGTCCCTCCCTCCCTCCCTTCCCTACGGCACCAACCGCAAG
CAGTCGCGAAGGATTCGGGTGAAGGCGAGGACGAGGAGCAGGGAGGGAGG
GAGGGAAGGCAAGGAGGGCAGGGCACAAGGGAGGGAGGGAGGGAGGAAGG
GAAGGAGGATAGCTTGCTCCCGATTGCCCAGGCGCTGTCTCAATTACCCT
CATCTTATTGGGAGTCGTCGTCGGGGGTGATTGAAAATGCCACGGCAAAT
GAGgtgagggagggagggagggagggaggaaagaatctgacgacagaaag
tgattgaaagtaggtttacttcacgaggctaaggcccctccctccctcct
gtagGACCCAGATCACGTCATGGCCTTGTCGTCGGATCAGATTCGCTTGT
ACCACgtaaggctcgaggaagggagggagggagggagggaaggagggagg
gagggagggagggagggaaggaaggaaggaagaaaggaaggaaggaagga
aggaaggaaggaaagaaggaaagattcccaccctactatccccctcctcc
tcccacccacccccttcccctcccttcctccccccccgccccacagGTAT
GGAAACTGAGCAAACGCCTTCGCTTCCTTTGCATGGTCTCTTTGGCCCTC
GGGCTTTTTTCCACCCTCCAGCTCAAAACGGTCTTCACCCTTCTCCTCGT
GCCCTTTTTGGGATGGTACTCCTCCCGGGTCTACTCCCTCCTCACCGCCG
TCGGCTTCTGCCTCTTCCAGTGCCTCCCCATTGCCCTTCGTCTTGATGCC
CTCTTTACCGGACGGGTAACAGAATCCAGTATCAAGgtacagcccacctt
tccctccctccctcccttccccgggccctctccggcgtctggattcttca
ctactgctcctccctccgccgcctcctcctcctcgtcctcctccttctct
cacacttcctccttcccttcctccctcagGTCCTCTACAGCCTCTGCATC
CTTCTTGAATGTTTCCTTGTCCGCTTGGCGTTCCTCTTTGTCCTCCAGCT
ACGGCAGTGTCGCCCTGTCGgtacgttgccctccttccctccctccctct
ttccttcccttagcgctcgatatctcgcgcgcgttgtcgattcctctcaa
tcctcccatcctccccttcctccctccctccctcctcctccataatactt
tcgttccgccaaacgtccccttccctccctctctccctccctcttccagA
GCTGAGCCTCTTACGAACGGTCTACCAAAGTTTTTTCCAGGACGTGGAAA
GACAGGCTGAAGGCCGGTGCGCATGGTGA
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protein sequence of NO30G00810.1

>NO30G00810.1-protein ID=NO30G00810.1-protein|Name=NO30G00810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=616bp
MQQQQQPPPPPPASSYSISNNSSSHTDELVQEDKEEGVVDARAPPPMPPR
PCSPPPLPPLSTESVSATVVILPPPSLPPSFPPSSSSSSSFFPSLAMAAF
TRGRGRGRRGRGSEGERVVEDYQLPTALYDPTAYAPTHVTLLDANGLPFA
PSSSSSSFSSSSSSSSAHNTTTAEAAATAAAATAAAATAAAAGTRGDASS
SSSSSSSDSISSSMATSSAPLVPSDRGGGGGGGREGRTRGRISQTFSRLL
SSSSHRGLIMVAVPLSVEHHYGREGGREEGHGGGRRQGVSSLEEAERGEG
REEERQQHHHHHHHHHHHHRPYVHEEEGREGRRREEEGEEEEDQQQQSTS
EDGNEGEEGRRGGGRGRGGGGRGILPSALPSVPPSLPSLRHQPQAVAKDS
GEGEDEEQGGREGRQGGQGTREGGREEGKEDSLLPIAQALSQLPSSYWES
SSGVIENATANEDPDHVMALSSDQIRLYHVWKLSKRLRFLCMVSLALGLF
STLQLKTVFTLLLVPFLGWYSSRVYSLLTAVGFCLFQCLPIALRLDALFT
GRVTESSIKVLYSLCILLECFLVRLAFLFVLQLRQCRPVELSLLRTVYQS
FFQDVERQAEGRCAW*
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Synonyms
Publications