NO30G00570, NO30G00570 (gene) Nannochloropsis oceanica

Overview
NameNO30G00570
Unique NameNO30G00570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length258
Alignment locationchr30:217228..217485 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:217228..217485 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR031568Pet117
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO30G00570 vs. NCBI_GenBank
Match: EWM20595.1 (hypothetical protein Naga_100736g3 [Nannochloropsis gaditana])

HSP 1 Score: 62.4 bits (150), Expect = 8.000e-7
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 0 
Query:    2 KGSRGPWAVLGAVSVFAGGAIVYVHYDQQKQRTDMRKLILE 43
            +  RGPW VLG VS  A  AI YVHYDQQKQRTDMR+LI+E
Sbjct:    5 RAGRGPWLVLGLVSTLAVTAIGYVHYDQQKQRTDMRRLIVE 45
The following BLAST results are available for this feature:
BLAST of NO30G00570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20595.18.000e-770.73hypothetical protein Naga_100736g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR051ncniR051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR102ngnoR102Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00570.1NO30G00570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605895gene_9260Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100736g3gene9811Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00570.1NO30G00570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00570 ID=NO30G00570|Name=NO30G00570|organism=Nannochloropsis oceanica|type=gene|length=258bp
ATGAAAGGCAGTCGGGGTCCTTGGGCCGTACTAGGGGCCGTCTCGGTATT
CGCAGGTGGAGCCATCGTCTACGTGCATTACGACCAGCAAAAGCAGCGAA
CGGACATGCGAAAGCTTATCTTGGAAGAAAAGGAGCGGGAGCGGCAGGAA
CGCATGGAGGCGTATGCACACAATCAACAAAGAGTGGAGGTAGTCGCAGC
AGCAGCAGCAACAGCAGCAGCAGCAGTACCATCATCTAGCCAGGGCTTAA
GAAGGTAG
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protein sequence of NO30G00570.1

>NO30G00570.1-protein ID=NO30G00570.1-protein|Name=NO30G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MKGSRGPWAVLGAVSVFAGGAIVYVHYDQQKQRTDMRKLILEEKERERQE
RMEAYAHNQQRVEVVAAAAATAAAAVPSSSQGLRR*
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Synonyms
Publications