NO30G00560, NO30G00560 (gene) Nannochloropsis oceanica

Overview
NameNO30G00560
Unique NameNO30G00560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4980
Alignment locationchr30:215897..220876 -

Link to JBrowse

Properties
Property NameValue
DescriptionCoA ester lyase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:215897..220876 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0046872metal ion binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR015813Pyrv/PenolPyrv_Kinase-like_dom
IPR005000Aldolase/citrate-lyase_domain
Homology
BLAST of NO30G00560 vs. NCBI_GenBank
Match: EWM20597.1 (citrate lyase beta subunit [Nannochloropsis gaditana])

HSP 1 Score: 268.9 bits (686), Expect = 2.400e-68
Identity = 128/143 (89.51%), Postives = 137/143 (95.80%), Query Frame = 0
Query:  180 MAIWAMIETPAAVMNIKEISQSANFVPRLEALMIGTSDLTNELHALHHPDRTPLIYSLSSCVVAARAFKLRVIDGVHLNLNDPEGFAAACAQGRALGFDGKSLIHPKTVAAANKAFGPRPDELAHAERLLQAWRDAQAHGEGL 323
            M IWAM+ETPAAVMNIKEI++SANFVPRLEALM+GTSDLTNELHALHHPDR PL+YSLSSC+VAARAFKLRVIDGVHLNLNDP GFAAACAQGRALGFDGKSLIHPKTVA ANKAFGPRPDELAHAER+L AWR+AQAHGE +
Sbjct:    1 MGIWAMVETPAAVMNIKEIARSANFVPRLEALMMGTSDLTNELHALHHPDRVPLLYSLSSCLVAARAFKLRVIDGVHLNLNDPNGFAAACAQGRALGFDGKSLIHPKTVAEANKAFGPRPDELAHAERVLTAWREAQAHGEAI 143          
BLAST of NO30G00560 vs. NCBI_GenBank
Match: WP_044427587.1 (CoA ester lyase [Skermanella aerolata] >KJB95943.1 (3S)-malyl-CoA thiolesterase [Skermanella aerolata KACC 11604])

HSP 1 Score: 265.4 bits (677), Expect = 2.700e-67
Identity = 147/296 (49.66%), Postives = 198/296 (66.89%), Query Frame = 0
Query:   58 RPLRSVLFTPGSRIDKMRKALTQVPADVLAFDLEDSVSYDRKVEAREQVKLALAEDTSPVSLSSRRYITVRVNCQGSKWWTEDLAAMAGTGKVDAVIIPKVQNADTLITANELLSRYGASPRMAIWAMIETPAAVMNIKEISQSANFVPRLEALMIGTSDLTNELHALHHPDRTPLIYSLSSCVVAARAFKLRVIDGVHLNLNDPEGFAAACAQGRALGFDGKSLIHPKTVAAANKAFGPRPDELAHAERLLQAWRDAQAHGEGLAVVDGQLIEMLHVEEAHRLLATQLNIEAMEA 354
            RP RSVL+ PGS    M K  T + AD L  DLED+V+ D K +AR Q+  A+A          +R + VR N   + W  EDL   A T   DAV++PKV++AD +  A ++L   GA   + IW M+ETP A++N KEI+ ++   PRL A ++GTSDL  +LHA H  DR P+I SL  C++AARA+ L ++DGV+L+LND EGFAA+C QG  LGFDGK+LIHPKT+AA N AFGP  DE+AH+ R++ A++ A A G+G+ +VDG+L+E LHVE A RL+A    IEA+EA
Sbjct:    6 RPRRSVLYMPGSNPRAMEKGKT-LQADGLILDLEDAVAPDAKAQARTQIGDAIAGGG-----YGKRELIVRTNGLNTAWGYEDL-VFAATSGADAVLLPKVESADLVRQAEQVLVASGAPAGLKIWCMMETPLAMLNAKEIAGAS---PRLGAFVMGTSDLAKDLHAAHTRDRLPMITSLGLCLLAARAYGLAILDGVYLDLNDDEGFAASCRQGVELGFDGKTLIHPKTLAATNAAFGPSTDEVAHSRRIIDAFQAAVAEGKGVVLVDGKLVENLHVENARRLVALAEAIEALEA 291          
BLAST of NO30G00560 vs. NCBI_GenBank
Match: WP_037450120.1 (CoA ester lyase [Skermanella stibiiresistens] >EWY41203.1 (3S)-malyl-CoA thiolesterase [Skermanella stibiiresistens SB22])

HSP 1 Score: 264.2 bits (674), Expect = 6.000e-67
Identity = 146/296 (49.32%), Postives = 195/296 (65.88%), Query Frame = 0
Query:   58 RPLRSVLFTPGSRIDKMRKALTQVPADVLAFDLEDSVSYDRKVEAREQVKLALAEDTSPVSLSSRRYITVRVNCQGSKWWTEDLAAMAGTGKVDAVIIPKVQNADTLITANELLSRYGASPRMAIWAMIETPAAVMNIKEISQSANFVPRLEALMIGTSDLTNELHALHHPDRTPLIYSLSSCVVAARAFKLRVIDGVHLNLNDPEGFAAACAQGRALGFDGKSLIHPKTVAAANKAFGPRPDELAHAERLLQAWRDAQAHGEGLAVVDGQLIEMLHVEEAHRLLATQLNIEAMEA 354
            RP R VL+ PGS    M K  T +PAD L  DLED+V+ D K  AR Q+  A+           +R + VR N   + W  EDL   A +G  DAV++PKV++AD +  A ++L   GA   + IW M+ETP A++N+KEI   A   PRL  L++GTSDL  +LHA H  DR P+I SL  C++AARA+ L ++DGV+L+LND EGFAA+C QG  LGFDGK+LIHPKT+AAAN AFGP  +E+A + R ++A++ A A G+G+ VVDG+L+E LHVE A RL+A    IEAM +
Sbjct:    6 RPRRGVLYMPGSNPRAMEKGKT-LPADGLILDLEDAVAPDAKAAARGQIGAAIQGGG-----YGQRELIVRTNGLNTPWGYEDLVFAANSG-ADAVLLPKVESADAVRQAEQILVASGAPAGLKIWCMMETPLAMLNVKEI---AGATPRLGGLVMGTSDLAKDLHAAHTRDRLPMITSLGLCLLAARAYGLAILDGVYLDLNDDEGFAASCRQGVELGFDGKTLIHPKTLAAANAAFGPSAEEVAQSRRFIEAFQAASAEGKGVVVVDGKLVENLHVENARRLVALAEAIEAMSS 291          
BLAST of NO30G00560 vs. NCBI_GenBank
Match: WP_067555970.1 (CoA ester lyase [Oceanibaculum pacificum] >KZD08281.1 malyl-CoA thiolesterase [Oceanibaculum pacificum])

HSP 1 Score: 263.8 bits (673), Expect = 7.900e-67
Identity = 143/296 (48.31%), Postives = 200/296 (67.57%), Query Frame = 0
Query:   58 RPLRSVLFTPGSRIDKMRKALTQVPADVLAFDLEDSVSYDRKVEAREQVKLALAEDTSPVSLSSRRYITVRVNCQGSKWWTEDLAAMAGTGKVDAVIIPKVQNADTLITANELLSRYGASPRMAIWAMIETPAAVMNIKEISQSANFVPRLEALMIGTSDLTNELHALHHPDRTPLIYSLSSCVVAARAFKLRVIDGVHLNLNDPEGFAAACAQGRALGFDGKSLIHPKTVAAANKAFGPRPDELAHAERLLQAWRDAQAHGEGLAVVDGQLIEMLHVEEAHRLLATQLNIEAMEA 354
            RP RSVL+ PGS    + KA   +PAD L FDLED+V+ D K EAR  ++ A+A+         +R + VRVN  G+ W   DLA MA  G   A+++PKV++ADT+  A  +L+  GA   +AIW M+ETP A+++ K+I+++    PRL   ++GTSDL  +L ALH PDR P + SL  C++AARA+ L ++DGV+L+L D EGFAAAC QGR +GFDGK+LIHPKT+AAAN+ F P  DE+A + +++ A  +A+  G+G+ +VDG+LIE LHV  A RL+A    I A+EA
Sbjct:    6 RPRRSVLYMPGSNARALDKA-RGLPADGLVFDLEDAVAPDAKAEARGLIRAAIAQGG-----YGKRELIVRVNGLGTPWGYPDLAEMATAG-AHAILLPKVESADTVRQAEAILAASGAPADLAIWCMMETPLAMLDAKDIARA---TPRLGGFVMGTSDLAKDLGALHTPDRLPFVTSLGLCLLAARAYGLAILDGVYLDLTDEEGFAAACRQGREMGFDGKTLIHPKTIAAANQVFAPSADEIAWSRKIIAAHAEAERQGKGVLLVDGKLIENLHVVSAQRLVAQADAIAALEA 291          
BLAST of NO30G00560 vs. NCBI_GenBank
Match: WP_014247109.1 (CoA ester lyase [Azospirillum lipoferum] >CBS86065.1 citryl-CoA lyase [Azospirillum lipoferum 4B])

HSP 1 Score: 260.8 bits (665), Expect = 6.700e-66
Identity = 143/294 (48.64%), Postives = 191/294 (64.97%), Query Frame = 0
Query:   58 RPLRSVLFTPGSRIDKMRKALTQVPADVLAFDLEDSVSYDRKVEAREQVKLALAEDTSPVSLSSRRYITVRVNCQGSKWWTEDLAAMAGTGKVDAVIIPKVQNADTLITANELLSRYGASPRMAIWAMIETPAAVMNIKEISQSANFVPRLEALMIGTSDLTNELHALHHPDRTPLIYSLSSCVVAARAFKLRVIDGVHLNLNDPEGFAAACAQGRALGFDGKSLIHPKTVAAANKAFGPRPDELAHAERLLQAWRDAQAHGEGLAVVDGQLIEMLHVEEAHRLLATQLNIEAM 352
            RP RSVL+ PGS    + K    +PAD L  DLED+V+ D K  AR+ +  ALA           R + +RVN   + W  +DL   A +G  DAV++PKV++AD++  A  +L   GA     IW M+ETP  V+N KEI+ ++   P + AL++GTSDL  +LHA H   R P+I SL  C++AARA+ L V+DGVHL+LND EGFAA+C QGR LGFDGK+LIHPKT+AA N AF P  DE+AHA R++ A  +A A G+G+ +VDG+L+E LHVE A RL+A    I A+
Sbjct:    6 RPRRSVLYMPGSNARALEKG-RSLPADGLILDLEDAVAPDAKAAARDTIAQALA-----AGGYGGRELIIRVNGLNTPWGYDDLRMAAASG-ADAVLLPKVESADSVRQAEAVLRTAGAPASQTIWCMMETPLGVLNAKEIAGAS---PAVGALVLGTSDLAKDLHAAHTAQRLPMITSLGLCLLAARAYGLAVLDGVHLDLNDDEGFAASCRQGRELGFDGKTLIHPKTIAACNAAFAPDADEIAHAHRIIAAHAEAAASGKGVVLVDGKLVENLHVENARRLVALAEAIAAL 289          
BLAST of NO30G00560 vs. NCBI_GenBank
Match: WP_045581980.1 (CoA ester lyase [Azospirillum thiophilum] >KJR66686.1 malyl-CoA thiolesterase [Azospirillum thiophilum] >ALG69636.1 malyl-CoA thiolesterase [Azospirillum thiophilum])

HSP 1 Score: 259.2 bits (661), Expect = 1.900e-65
Identity = 139/286 (48.60%), Postives = 188/286 (65.73%), Query Frame = 0
Query:   58 RPLRSVLFTPGSRIDKMRKALTQVPADVLAFDLEDSVSYDRKVEAREQVKLALAEDTSPVSLSSRRYITVRVNCQGSKWWTEDLAAMAGTGKVDAVIIPKVQNADTLITANELLSRYGASPRMAIWAMIETPAAVMNIKEISQSANFVPRLEALMIGTSDLTNELHALHHPDRTPLIYSLSSCVVAARAFKLRVIDGVHLNLNDPEGFAAACAQGRALGFDGKSLIHPKTVAAANKAFGPRPDELAHAERLLQAWRDAQAHGEGLAVVDGQLIEMLHVEEAHRLLA 344
            RP RSVL+ PGS    + K    +PAD L  DLED+V+ D K  AR+ +  ALA          RR + VR N   + W  +DL   A +G  DAV++PKV++AD +  A  +L + GA  R ++W M+ETP  ++N KEI+ ++   P + AL++GTSDL  +LHA H   R P+I SL  C++AARA+ L V+DGVHL+LND EGFAA+C QGR LGFDGK+LIHPKT+AA N AF P  +E+A A R++ A  +A A G G+ +VDG+L+E LHVE A RL+A
Sbjct:    6 RPRRSVLYMPGSNARALEKG-RSLPADGLILDLEDAVAPDAKAAARDTIASALA-----AGGYGRRELIVRTNGLNTPWGYDDLRMAAASG-ADAVLLPKVESADAVRQAEAVLRQAGAPARQSVWCMMETPLGILNAKEIAGAS---PAVGALVLGTSDLAKDLHAAHTAQRLPMITSLGLCLLAARAYGLAVLDGVHLDLNDDEGFAASCRQGRELGFDGKTLIHPKTIAACNDAFAPDAEEIAQAHRIIAAHAEAAAAGRGVVLVDGKLVETLHVENARRLVA 281          
BLAST of NO30G00560 vs. NCBI_GenBank
Match: WP_029007883.1 (CoA ester lyase [Azospirillum halopraeferens])

HSP 1 Score: 257.7 bits (657), Expect = 5.600e-65
Identity = 143/295 (48.47%), Postives = 188/295 (63.73%), Query Frame = 0
Query:   58 RPLRSVLFTPGSRIDKMRKALTQVPADVLAFDLEDSVSYDRKVEAREQVKLALAEDTSPVSLSSRRYITVRVNCQGSKWWTEDLAAMAGTGKVDAVIIPKVQNADTLITANELLSRYGASPRMAIWAMIETPAAVMNIKEISQSANFVPRLEALMIGTSDLTNELHALHHPDRTPLIYSLSSCVVAARAFKLRVIDGVHLNLNDPEGFAAACAQGRALGFDGKSLIHPKTVAAANKAFGPRPDELAHAERLLQAWRDAQAHGEGLAVVDGQLIEMLHVEEAHRLLATQLNIEAME 353
            RP RSVL+ PGS    + K  T +PAD L  DLED+V+ D K  AR+ ++ ALA           R + VRVN   S W  +DL  MA T   DAV++PKV++AD +  A+ +L   GA   +A+W M+ETP  ++N   I   A  +PR  AL++GTSDL  +LHA H PDR P+I +L  C++AARA+   ++DGVHL+L D  GFAAAC QGR LGFDGK+LIHPKT+AA N AF P  DE+    R++ A   A A G+G+ VVDG+L+E LHVE A RL+A    I A+E
Sbjct:    6 RPRRSVLYMPGSNARALEKGRT-LPADGLILDLEDAVAPDAKAAARDTIRAALA-----AGGYGGRELVVRVNGLASPWGYDDL-VMAATSGADAVLLPKVESADAVRQADAVLRAAGAPQTLAVWCMMETPLGMLNAAAI---AGALPRPGALVMGTSDLAKDLHAAHTPDRLPMITALGLCLLAARAYGHAILDGVHLDLADDAGFAAACRQGRELGFDGKTLIHPKTIAACNAAFAPAADEIESCRRIIDAHAAAVAEGKGVVVVDGRLVENLHVENARRLVALAAAIAALE 290          
BLAST of NO30G00560 vs. NCBI_GenBank
Match: WP_094305137.1 (CoA ester lyase [Azospirillum brasilense] >OYD82610.1 CoA ester lyase [Azospirillum brasilense])

HSP 1 Score: 257.3 bits (656), Expect = 7.400e-65
Identity = 139/297 (46.80%), Postives = 192/297 (64.65%), Query Frame = 0
Query:   58 RPLRSVLFTPGSRIDKMRKALTQVPADVLAFDLEDSVSYDRKVEAREQVKLALAEDTSPVSLSSRRYITVRVNCQGSKWWTEDLAAMAGTGKVDAVIIPKVQNADTLITANELLSRYGASPRMAIWAMIETPAAVMNIKEISQSANFVPRLEALMIGTSDLTNELHALHHPDRTPLIYSLSSCVVAARAFKLRVIDGVHLNLNDPEGFAAACAQGRALGFDGKSLIHPKTVAAANKAFGPRPDELAHAERLLQAWRDAQAHGEGLAVVDGQLIEMLHVEEAHRLLATQLNIEAMEAS 355
            RP RSVL+ PGS    + K    +PAD L  DLED+V+ D K EAR  +K ++A           R + VR N   + W  +DL   A +G  DAV++PKV++AD +  A  +L   G+     IW M+ETP  ++N KEI+ ++   P+L  L++GTSDL  +LHA H  DR P++ SL  C++AARA+ L ++DGVHL+LND  GFA +C QGR LGFDGK+LIHPKT+AA N AF P  +E+A A R++QA  +A A G+G+ +VDG+L+E LHVE A RL+A    I A+EA+
Sbjct:    6 RPRRSVLYMPGSNARALEKG-RSLPADGLILDLEDAVAPDAKAEARATIKASIA-----AGGYGGRELVVRTNGLNTPWGYDDLVMAAASG-ADAVLLPKVESADMVRQAEAVLRANGSPDGQTIWCMMETPLGMLNAKEIAGAS---PKLGGLVMGTSDLAKDLHAAHTRDRLPMLTSLGLCLLAARAYGLAILDGVHLDLNDDAGFADSCTQGRELGFDGKTLIHPKTIAACNAAFAPGEEEVAQAHRIIQAHAEAVAQGKGVVLVDGRLVENLHVENARRLVALAEAIRALEAA 292          
BLAST of NO30G00560 vs. NCBI_GenBank
Match: WP_089945366.1 (CoA ester lyase [Candidatus Entotheonella palauensis] >ETX05817.1 (3S)-malyl-CoA thiolesterase [Candidatus Entotheonella gemina])

HSP 1 Score: 256.9 bits (655), Expect = 9.600e-65
Identity = 139/296 (46.96%), Postives = 196/296 (66.22%), Query Frame = 0
Query:   58 RPLRSVLFTPGSRIDKMRKALTQVPADVLAFDLEDSVSYDRKVEAREQVKLALAEDTSPVSLSSRRYITVRVNCQGSKWWTEDLAAMAGTGKVDAVIIPKVQNADTLITANELLSRYGASPRMAIWAMIETPAAVMNIKEISQSANFVPRLEALMIGTSDLTNELHALHHPDRTPLIYSLSSCVVAARAFKLRVIDGVHLNLNDPEGFAAACAQGRALGFDGKSLIHPKTVAAANKAFGPRPDELAHAERLLQAWRDAQAHGEGLAVVDGQLIEMLHVEEAHRLLATQLNIEAMEA 354
            RP RS+LF PGS    + KA T +PAD L FDLED+V+ D KV AREQV  A+            R + VR N   + W  +DLAA+A  G   AV++PKV++AD +     +L+ +G    +AIW M+ETP  ++  + I+ ++   PR+ AL++GTSDLT +L A H  +RTPL++SL  C++  RA+ L V+DGVHL L+D EGFA  C QG  +GFDGK+LIHPKT+ AAN A+ P P+++A A R+++A  +A+A G+G+ +VDGQLIE LHVE A R++    +I A+EA
Sbjct:    6 RPRRSMLFMPGSNARAIEKAKT-LPADGLIFDLEDAVAPDAKVMAREQVCAAVR-----AGGYGGRELVVRANALTTLWGRDDLAAVATCG-AHAVLVPKVESADGVRQVISILTEHGGPDSLAIWCMLETPLGILRAESIATAS---PRVAALVMGTSDLTKDLQAKHTRERTPLLHSLGHCLLVGRAYGLVVLDGVHLELSDDEGFAEVCRQGAEMGFDGKTLIHPKTIDAANAAYAPSPEDVAWARRVMEAHAEAEAKGQGVVLVDGQLIENLHVESAQRVVRIAESIAALEA 291          
BLAST of NO30G00560 vs. NCBI_GenBank
Match: WP_042688546.1 (CoA ester lyase [Azospirillum sp. B506])

HSP 1 Score: 256.9 bits (655), Expect = 9.600e-65
Identity = 141/294 (47.96%), Postives = 189/294 (64.29%), Query Frame = 0
Query:   58 RPLRSVLFTPGSRIDKMRKALTQVPADVLAFDLEDSVSYDRKVEAREQVKLALAEDTSPVSLSSRRYITVRVNCQGSKWWTEDLAAMAGTGKVDAVIIPKVQNADTLITANELLSRYGASPRMAIWAMIETPAAVMNIKEISQSANFVPRLEALMIGTSDLTNELHALHHPDRTPLIYSLSSCVVAARAFKLRVIDGVHLNLNDPEGFAAACAQGRALGFDGKSLIHPKTVAAANKAFGPRPDELAHAERLLQAWRDAQAHGEGLAVVDGQLIEMLHVEEAHRLLATQLNIEAM 352
            RP RSVL+ PGS    + K    +PAD L  DLED+V+ D K  AR+ +  ALA          RR + VRVN   + W  +DL   A +G  DAV++PKV++AD +  A  +L   GA    A+W M+ETP  ++N KEI+ ++   P++  L++GTSDL  +LHA H   R P+I SL  C++AARAF L V+DGVHL+LND EGFAA+C QGR LGFDGK+LIHPKT+AA N AF P   E+A A R++ A  +A A G+G+ +VDG+L+E LHVE A RL+     I A+
Sbjct:    6 RPRRSVLYMPGSNARALEKG-RSLPADGLILDLEDAVAPDAKAMARDTIAGALA-----AGGYGRRELIVRVNGLNTPWGYDDLRMAAASG-ADAVLLPKVESADAVRQAEAVLRSAGAPDGQAVWCMMETPLGILNAKEIAGAS---PKIGGLVLGTSDLAKDLHAAHTAQRLPMITSLGLCLLAARAFGLAVLDGVHLDLNDDEGFAASCRQGRELGFDGKTLIHPKTIAACNAAFAPDAGEIAQAHRIIAAHAEAAAAGQGVVLVDGKLVETLHVENARRLVTLAEAIAAL 289          
The following BLAST results are available for this feature:
BLAST of NO30G00560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20597.12.400e-6889.51citrate lyase beta subunit [Nannochloropsis gadita... [more]
WP_044427587.12.700e-6749.66CoA ester lyase [Skermanella aerolata] >KJB95943.1... [more]
WP_037450120.16.000e-6749.32CoA ester lyase [Skermanella stibiiresistens] >EWY... [more]
WP_067555970.17.900e-6748.31CoA ester lyase [Oceanibaculum pacificum] >KZD0828... [more]
WP_014247109.16.700e-6648.64CoA ester lyase [Azospirillum lipoferum] >CBS86065... [more]
WP_045581980.11.900e-6548.60CoA ester lyase [Azospirillum thiophilum] >KJR6668... [more]
WP_029007883.15.600e-6548.47CoA ester lyase [Azospirillum halopraeferens][more]
WP_094305137.17.400e-6546.80CoA ester lyase [Azospirillum brasilense] >OYD8261... [more]
WP_089945366.19.600e-6546.96CoA ester lyase [Candidatus Entotheonella palauens... [more]
WP_042688546.19.600e-6547.96CoA ester lyase [Azospirillum sp. B506][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR051ncniR051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR102ngnoR102Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00560.3NO30G00560.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO30G00560.2NO30G00560.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO30G00560.1NO30G00560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00560.3NO30G00560.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO30G00560.2NO30G00560.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO30G00560.1NO30G00560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00560 ID=NO30G00560|Name=NO30G00560|organism=Nannochloropsis oceanica|type=gene|length=4980bp
ACGAAGGAGCAGGATCTGCAGTTATCTCGCCCTGCCTCGCATACTTTCTG
GCGCCTCGCTTAGATCGGCTTTCTCCTTGCGCTGCTTTCCTTCGCTGCGT
TCTTCAAGCCCTCCAGCCCACCGCAAACAATGCGTGGCCTCGTCCGCACC
ATGGCCGCCGAGGTCCTCTGCCCCGCAACGTCTCCGCTATCTGCTGGAGT
CGCACTCAAGgtacgtgcccgggtgagggtagaaagagaatgtcgtctgg
catcacaggggcagacactcgccccaattatgacgatcttgaggtcaaag
tgtgctcgtcggatcctccccggacactgcataataaaattcggttttaa
ccttgtaaaacccttttaaaagatattgcttctcgtctctggcatgaaga
tatgtgccgcttctttttatctattcgcaccacccctccaccactattgc
cctctgtaccatctctatcactcacgctcatttgctcttcatgcacaaac
agCAGAGATGCAACCCTTCTTCCTCTTCCTTCCAGCACCAACAAGTCAGA
TGTATTGAGTACAAATCCCCTCGGCCCAAGCGCGACGCCCACCGCCCCCT
TCGCTCAGTCCTCTTCACGCCTGGCTCGCGTATTGATAAGATGCGGAAGG
CGTTGACGCAGGTCCCCGCTGACGTGCTTGCCTTCGACCTTGAGGATTCT
GTGAGCTACGACAGgtaaaaatgagacccgccctccctccccactccctt
cccacctcctccccccttcttccctcttcatgcccggctcacctgacaca
ttgctgacttcttcgacctttttccaccagAAAAGTAGAAGCCCGTGAGC
AGGTAAAGCTGGCTCTGGCCGAGGACACCTCCCCCGTCTCCCTCTCTTCC
CGGCGCTATATTACAGTGAGAGTGAACTGTCAAGGCAGCAAGTGGTGGAC
CGAAGACCTCGCCGCCATGGCAGGGACCGgtgcgtacgccctctctccct
ccctccctccctccctccctccctccctccctccctccctccctccctcc
ctccctccctccctccctccctccctccctccttccctccctccccctct
ccctctctccctctctctctccctccctctctccctccctccctccctcc
ttcctttcccccctatccaaataaatgtgctacgaacttccttcctcctt
ccctatctccctcccttccttcaatgctccctctctcctaatcagcgtgg
acgcagtcatattccccccatcacctcgccttaccacagccaagaagtcc
gtgtgcctccattccttcccccctccctcccccccccctcccagGCAAAG
TTGACGCGGTCATCATTCCCAAGGTACAGAACGCAGACACTCTTATCACA
GCCAACGAGCTCTTGTCGCGCTATGGAGCCTCTCCGCGCATGGCGATATG
GGCCATGATCGAGACGCCGGCGGCGGTGATGAACATCAAGGAGATTAGCC
AGAGCGCGAACTTCGTCCCTCGTCTGGAGGCCCTGATGATTGGAACGAGT
GACTTGACGgtacgtgatgaaggcgtgcacgaacgacgaggataatgggt
acattaatgaacggcctatggccgttttacacgttgttcatcgattcatc
atcatccacctcgagcgtggcgcaccccctccatcatcgcgactggtttc
accctcttcatttctctctccttctgatgtcgctatgcgctaatttgaat
ctctgccaattgtccaaccaaccacagAACGAGCTACACGCCCTCCACCA
CCCTGACCGCACCCCCCTCATCTACTCCCTCTCCTCCTGTGTTGTCGCGG
CCCGCGCCTTCAAGCTCCGCGTCATCGATGGCGTTCACCTCAACCTCAAC
GACCCCGAGGGCTTCGCCGCCGCCTGCGCCCAAGGAAGgtatgctcctcc
ctctctctctccctccccgccatactcagcgcgtcgagcctgccaaagat
cagcacgcatatgatcgcacttctctgaaacatgcctccgtccgctgctg
ccttcctcctctcgttcctccctcccccctccaccagAGCGCTAGGCTTC
GATGGCAAGTCTCTCATCCACCCTAAAACAGTGGCGGCGGCCAACAAAGC
TTTCGGACCACGGCCAGACGAGCTGGCTCACGCCGAGAGGCTGCTGCAGG
CGTGGAGGGACGCTCAGGCGCATGGGGAGGgtacgttactattttgatga
tgcgagattccctgcgttctttctcacccttccctcccctccgttttcta
tcccacaaccttcccttcccctttcttccctcctgtcctccctcctgcct
tccagGTCTCGCGGTAGTGGACGGGCAACTGATCGAAATGCTGCACGTGG
AGGAGGCGCACCGGCTGCTGGCCACCCAGCTGAACATCGAGGCCATGGAA
GCCTCGGTGCACGTCCAGGCGGGCATGAGGCCACACTCAGCCATGGCCAC
TACGAGTGACACCACGCACTGATGGGCGGAGCGTTGGCAAGGTCGGATCG
GGAGGGCGGGTTGGTGGAGAGGGGGGGGAGGGCCGAGGTGATTGAGGTAG
GAGGATGGAAGGAGGCACGTGCAGCAGGTGGTCAAAAGGACGCCGTACCC
GACCAGGTTTATAACCAGTGGAGCGATGCAGTCGATTAGGGGTACAACCA
GCTATAGCATGTCGGAGTCGTTCAGAGGCTGGGGAGTGGATGAGGGAGAA
AAAAGGAACGAAGATCGGGGAGAGGAAAATATGTACAGTGAGGAGGGACA
GAGGACCCGACTGACCACTGCTGCTACTTCTTCTACCAGTGGAAGCAATA
CCCCGCATGAAGCGTCTTGTTGTGGGACGCGGCAGGACGTATGCGATTGA
CCGGGGAGAAGGTCCTTTCTTACTGGGCGTGCCTGTGTCCGTGTGCCCCT
TCTCAGTATCGCCTTACCAGGAATGAGAATGAGATGAGAACGTGGATTGT
GCATTTGTGTTTGTGTGAGAGAGTATACGTCTAGTCAGACAGTAAATATG
TGAGTAGAGAGGTAGATGGGTAGGTGTATCTGGAAGTTACAGAGAGAGAT
CCTACCATCGACTGACCCAAACAACACACCCCAAATGAATTAAAAAGAGA
CCAGGAAAGATAAGGAATCATGTACAATAAAAACACATTGCTCATTTTCA
AAGAGATGCTTTACTCTTTCAATACTTTTTGCCCCCTGCATTGAGACGGC
AGCCTTTCCCCCTAAAACAAACGTGAATGTAACAGGAGCAAGTCTTCTTA
CTTTCTGCTCCTTGCTGCCATATGTGTATTTACTGTGCCTTTCGGGCCTC
ATTAACCCCCCCTTCCCCCCCTTCGGAGAACGTGCCGCGTGCTACCTTCT
TAAGCCCTGGCTAGATGATGGTACTGCTGCTGCTGCTGTTGCTGCTGCTG
CTGCGACTACCTCCACTCTTTGTTGATTGTGTGCATACGCCTCCATGCGT
TCCTGCCGCTCCCGCTCCTTTTCTTCCAAGATAAGCTTTCGCATGTCCGT
TCGCTGCTTTTGCTGGTCGTAATGCACGTAGACGATGGCTCCACCTGCGA
ATACCGAGACGGCCCCTAGTACGGCCCAAGGACCCCGACTGCCTTTCATT
CAGTGCGTTGCTGATGGCGCTTGTATCTGTGAGATTTTAGCAGTCTTCTC
GATAAAGCACGCGCTGATACTGCAAATGCCTGCGCAAGCGGGAGGTGGTG
GTTTGAGTGGATGTGTAAAATGGAATCTCCTGGAAAGTGTCCATTCGTTT
GCGTGGTTCCAACTCCAAACCACACCGACGACAGAAGCATAAAGTGGGGC
ATGATGGCATCGCCCCAGCCAACTCTAAATTTCCATGTCATTTTGGAGTG
AACAAGGCTTCCAATTTCAAGAAATCATAATGTATCGACAAAATACGGCT
CTAATTTTAGAACAACACGTGGCTAATAATTTTAAACATCGGTCGGCCTC
CAAATATGCTCTATCAGCGTGTTTCTCATCTTTCTTCCTCTCTGTTCTCG
ATTCCTCCTTAATTTTACTCAAATATTATGTCCTGCGACCAGTTTTCACC
CTCCTTCCACTCCTTCATATCCACCAACGCCTTCTCCTCGTCATTCATTT
CCTCCTTTCCCCTATGCCAAATACCGGATTACACTCTCCCTCCACCCTCC
CTCCAAACACCCTCTCTTCTTTATATCATCCACCCACATCATTCACCACC
CACCTCCAAAAACAACAGGCATCCCCCTTCCTTACAACCAAATTCATCTC
CCTCATTTCTCCGCCCTTTTCGCAGGAGTTGGTGGCCGCTGCATTGCGGC
TTTCAGGGCGCTCTCCCTTCCCAGGATAGTCGAAGGCAACGTTGGTTGAA
GACGTCGAGTCGAAAAAAATGCGCCTACTCCGGTCAACGCCCACAAGAAT
CACAATCAAGAGTGGAAAGGGAGAGAAAGTGGTGGATGCATGAGATTGTG
AGCATGATTGAAAGGCTGCCTATGAGAGATACGAACAACACCATGGCGAT
TTTGAAGTAGAATGATGCCGCCGAGTAAAGGCTCGCTATAGGTAAGTATC
GTGGTTCCTATTTCCCCTGTCTCTCCTCCTTTGCGCCTTTTCTCCCTCAA
TCTTTTCCCCCGTCATCTATTTCCCCGATGCTATATATTTTATACCGACC
TGTCTTTTCTTCCATTCTTCCATTAATCTCTCCTTCCCTCACTCCTTGGG
CAGTGGATACCGTCGAAGCACTTGATGAGGCCTTACCTGAGATAAAGATC
GATCGCGAGGTCTAGTGAGAGGAGTGAACGCGAAAAAGGGCATGGTAGCA
AGACAGTAGAAAAATAGACTGATCTTCTGTGATGATGTGCGATTTTACTG
CCTCTTATTTTCTGTGCGCGCTTGATAGAGGAATGCAAGAGTGTCCAAGG
CAATAAAGAAGGAGAAAAAGTGAGAAAAGC
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protein sequence of NO30G00560.3

>NO30G00560.3-protein ID=NO30G00560.3-protein|Name=NO30G00560.3|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MRGLVRTMAAEVLCPATSPLSAGVALKQRCNPSSSSFQHQQVRCIEYKSP
RPKRDAHRPLRSVLFTPGSRIDKMRKALTQVPADVLAFDLEDSVSYDRKV
EAREQVKLALAEDTSPVSLSSRRYITVRVNCQGSKWWTEDLAAMAGTGKV
DAVIIPKVQNADTLITANELLSRYGASPRMAIWAMIETPAAVMNIKEISQ
SANFVPRLEALMIGTSDLTNELHALHHPDRTPLIYSLSSCVVAARAFKLR
VIDGVHLNLNDPEGFAAACAQGRYAPPSLSPSPPYSARRACQRSARI*
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protein sequence of NO30G00560.2

>NO30G00560.2-protein ID=NO30G00560.2-protein|Name=NO30G00560.2|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MRGLVRTMAAEVLCPATSPLSAGVALKQRCNPSSSSFQHQQVRCIEYKSP
RPKRDAHRPLRSVLFTPGSRIDKMRKALTQVPADVLAFDLEDSVSYDRKV
EAREQVKLALAEDTSPVSLSSRRYITVRVNCQGSKWWTEDLAAMAGTGKV
DAVIIPKVQNADTLITANELLSRYGASPRMAIWAMIETPAAVMNIKEISQ
SANFVPRLEALMIGTSDLTNELHALHHPDRTPLIYSLSSCVVAARAFKLR
VIDGVHLNLNDPEGFAAACAQGRYAPPSLSPSPPYSARRACQRSARI*
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protein sequence of NO30G00560.1

>NO30G00560.1-protein ID=NO30G00560.1-protein|Name=NO30G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MRGLVRTMAAEVLCPATSPLSAGVALKQRCNPSSSSFQHQQVRCIEYKSP
RPKRDAHRPLRSVLFTPGSRIDKMRKALTQVPADVLAFDLEDSVSYDRKV
EAREQVKLALAEDTSPVSLSSRRYITVRVNCQGSKWWTEDLAAMAGTGKV
DAVIIPKVQNADTLITANELLSRYGASPRMAIWAMIETPAAVMNIKEISQ
SANFVPRLEALMIGTSDLTNELHALHHPDRTPLIYSLSSCVVAARAFKLR
VIDGVHLNLNDPEGFAAACAQGRALGFDGKSLIHPKTVAAANKAFGPRPD
ELAHAERLLQAWRDAQAHGEGLAVVDGQLIEMLHVEEAHRLLATQLNIEA
MEASVHVQAGMRPHSAMATTSDTTH*
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