NO30G00560, NO30G00560 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO30G00560 vs. NCBI_GenBank
Match: EWM20597.1 (citrate lyase beta subunit [Nannochloropsis gaditana]) HSP 1 Score: 268.9 bits (686), Expect = 2.400e-68 Identity = 128/143 (89.51%), Postives = 137/143 (95.80%), Query Frame = 0 Query: 180 MAIWAMIETPAAVMNIKEISQSANFVPRLEALMIGTSDLTNELHALHHPDRTPLIYSLSSCVVAARAFKLRVIDGVHLNLNDPEGFAAACAQGRALGFDGKSLIHPKTVAAANKAFGPRPDELAHAERLLQAWRDAQAHGEGL 323 M IWAM+ETPAAVMNIKEI++SANFVPRLEALM+GTSDLTNELHALHHPDR PL+YSLSSC+VAARAFKLRVIDGVHLNLNDP GFAAACAQGRALGFDGKSLIHPKTVA ANKAFGPRPDELAHAER+L AWR+AQAHGE + Sbjct: 1 MGIWAMVETPAAVMNIKEIARSANFVPRLEALMMGTSDLTNELHALHHPDRVPLLYSLSSCLVAARAFKLRVIDGVHLNLNDPNGFAAACAQGRALGFDGKSLIHPKTVAEANKAFGPRPDELAHAERVLTAWREAQAHGEAI 143
BLAST of NO30G00560 vs. NCBI_GenBank
Match: WP_044427587.1 (CoA ester lyase [Skermanella aerolata] >KJB95943.1 (3S)-malyl-CoA thiolesterase [Skermanella aerolata KACC 11604]) HSP 1 Score: 265.4 bits (677), Expect = 2.700e-67 Identity = 147/296 (49.66%), Postives = 198/296 (66.89%), Query Frame = 0 Query: 58 RPLRSVLFTPGSRIDKMRKALTQVPADVLAFDLEDSVSYDRKVEAREQVKLALAEDTSPVSLSSRRYITVRVNCQGSKWWTEDLAAMAGTGKVDAVIIPKVQNADTLITANELLSRYGASPRMAIWAMIETPAAVMNIKEISQSANFVPRLEALMIGTSDLTNELHALHHPDRTPLIYSLSSCVVAARAFKLRVIDGVHLNLNDPEGFAAACAQGRALGFDGKSLIHPKTVAAANKAFGPRPDELAHAERLLQAWRDAQAHGEGLAVVDGQLIEMLHVEEAHRLLATQLNIEAMEA 354 RP RSVL+ PGS M K T + AD L DLED+V+ D K +AR Q+ A+A +R + VR N + W EDL A T DAV++PKV++AD + A ++L GA + IW M+ETP A++N KEI+ ++ PRL A ++GTSDL +LHA H DR P+I SL C++AARA+ L ++DGV+L+LND EGFAA+C QG LGFDGK+LIHPKT+AA N AFGP DE+AH+ R++ A++ A A G+G+ +VDG+L+E LHVE A RL+A IEA+EA Sbjct: 6 RPRRSVLYMPGSNPRAMEKGKT-LQADGLILDLEDAVAPDAKAQARTQIGDAIAGGG-----YGKRELIVRTNGLNTAWGYEDL-VFAATSGADAVLLPKVESADLVRQAEQVLVASGAPAGLKIWCMMETPLAMLNAKEIAGAS---PRLGAFVMGTSDLAKDLHAAHTRDRLPMITSLGLCLLAARAYGLAILDGVYLDLNDDEGFAASCRQGVELGFDGKTLIHPKTLAATNAAFGPSTDEVAHSRRIIDAFQAAVAEGKGVVLVDGKLVENLHVENARRLVALAEAIEALEA 291
BLAST of NO30G00560 vs. NCBI_GenBank
Match: WP_037450120.1 (CoA ester lyase [Skermanella stibiiresistens] >EWY41203.1 (3S)-malyl-CoA thiolesterase [Skermanella stibiiresistens SB22]) HSP 1 Score: 264.2 bits (674), Expect = 6.000e-67 Identity = 146/296 (49.32%), Postives = 195/296 (65.88%), Query Frame = 0 Query: 58 RPLRSVLFTPGSRIDKMRKALTQVPADVLAFDLEDSVSYDRKVEAREQVKLALAEDTSPVSLSSRRYITVRVNCQGSKWWTEDLAAMAGTGKVDAVIIPKVQNADTLITANELLSRYGASPRMAIWAMIETPAAVMNIKEISQSANFVPRLEALMIGTSDLTNELHALHHPDRTPLIYSLSSCVVAARAFKLRVIDGVHLNLNDPEGFAAACAQGRALGFDGKSLIHPKTVAAANKAFGPRPDELAHAERLLQAWRDAQAHGEGLAVVDGQLIEMLHVEEAHRLLATQLNIEAMEA 354 RP R VL+ PGS M K T +PAD L DLED+V+ D K AR Q+ A+ +R + VR N + W EDL A +G DAV++PKV++AD + A ++L GA + IW M+ETP A++N+KEI A PRL L++GTSDL +LHA H DR P+I SL C++AARA+ L ++DGV+L+LND EGFAA+C QG LGFDGK+LIHPKT+AAAN AFGP +E+A + R ++A++ A A G+G+ VVDG+L+E LHVE A RL+A IEAM + Sbjct: 6 RPRRGVLYMPGSNPRAMEKGKT-LPADGLILDLEDAVAPDAKAAARGQIGAAIQGGG-----YGQRELIVRTNGLNTPWGYEDLVFAANSG-ADAVLLPKVESADAVRQAEQILVASGAPAGLKIWCMMETPLAMLNVKEI---AGATPRLGGLVMGTSDLAKDLHAAHTRDRLPMITSLGLCLLAARAYGLAILDGVYLDLNDDEGFAASCRQGVELGFDGKTLIHPKTLAAANAAFGPSAEEVAQSRRFIEAFQAASAEGKGVVVVDGKLVENLHVENARRLVALAEAIEAMSS 291
BLAST of NO30G00560 vs. NCBI_GenBank
Match: WP_067555970.1 (CoA ester lyase [Oceanibaculum pacificum] >KZD08281.1 malyl-CoA thiolesterase [Oceanibaculum pacificum]) HSP 1 Score: 263.8 bits (673), Expect = 7.900e-67 Identity = 143/296 (48.31%), Postives = 200/296 (67.57%), Query Frame = 0 Query: 58 RPLRSVLFTPGSRIDKMRKALTQVPADVLAFDLEDSVSYDRKVEAREQVKLALAEDTSPVSLSSRRYITVRVNCQGSKWWTEDLAAMAGTGKVDAVIIPKVQNADTLITANELLSRYGASPRMAIWAMIETPAAVMNIKEISQSANFVPRLEALMIGTSDLTNELHALHHPDRTPLIYSLSSCVVAARAFKLRVIDGVHLNLNDPEGFAAACAQGRALGFDGKSLIHPKTVAAANKAFGPRPDELAHAERLLQAWRDAQAHGEGLAVVDGQLIEMLHVEEAHRLLATQLNIEAMEA 354 RP RSVL+ PGS + KA +PAD L FDLED+V+ D K EAR ++ A+A+ +R + VRVN G+ W DLA MA G A+++PKV++ADT+ A +L+ GA +AIW M+ETP A+++ K+I+++ PRL ++GTSDL +L ALH PDR P + SL C++AARA+ L ++DGV+L+L D EGFAAAC QGR +GFDGK+LIHPKT+AAAN+ F P DE+A + +++ A +A+ G+G+ +VDG+LIE LHV A RL+A I A+EA Sbjct: 6 RPRRSVLYMPGSNARALDKA-RGLPADGLVFDLEDAVAPDAKAEARGLIRAAIAQGG-----YGKRELIVRVNGLGTPWGYPDLAEMATAG-AHAILLPKVESADTVRQAEAILAASGAPADLAIWCMMETPLAMLDAKDIARA---TPRLGGFVMGTSDLAKDLGALHTPDRLPFVTSLGLCLLAARAYGLAILDGVYLDLTDEEGFAAACRQGREMGFDGKTLIHPKTIAAANQVFAPSADEIAWSRKIIAAHAEAERQGKGVLLVDGKLIENLHVVSAQRLVAQADAIAALEA 291
BLAST of NO30G00560 vs. NCBI_GenBank
Match: WP_014247109.1 (CoA ester lyase [Azospirillum lipoferum] >CBS86065.1 citryl-CoA lyase [Azospirillum lipoferum 4B]) HSP 1 Score: 260.8 bits (665), Expect = 6.700e-66 Identity = 143/294 (48.64%), Postives = 191/294 (64.97%), Query Frame = 0 Query: 58 RPLRSVLFTPGSRIDKMRKALTQVPADVLAFDLEDSVSYDRKVEAREQVKLALAEDTSPVSLSSRRYITVRVNCQGSKWWTEDLAAMAGTGKVDAVIIPKVQNADTLITANELLSRYGASPRMAIWAMIETPAAVMNIKEISQSANFVPRLEALMIGTSDLTNELHALHHPDRTPLIYSLSSCVVAARAFKLRVIDGVHLNLNDPEGFAAACAQGRALGFDGKSLIHPKTVAAANKAFGPRPDELAHAERLLQAWRDAQAHGEGLAVVDGQLIEMLHVEEAHRLLATQLNIEAM 352 RP RSVL+ PGS + K +PAD L DLED+V+ D K AR+ + ALA R + +RVN + W +DL A +G DAV++PKV++AD++ A +L GA IW M+ETP V+N KEI+ ++ P + AL++GTSDL +LHA H R P+I SL C++AARA+ L V+DGVHL+LND EGFAA+C QGR LGFDGK+LIHPKT+AA N AF P DE+AHA R++ A +A A G+G+ +VDG+L+E LHVE A RL+A I A+ Sbjct: 6 RPRRSVLYMPGSNARALEKG-RSLPADGLILDLEDAVAPDAKAAARDTIAQALA-----AGGYGGRELIIRVNGLNTPWGYDDLRMAAASG-ADAVLLPKVESADSVRQAEAVLRTAGAPASQTIWCMMETPLGVLNAKEIAGAS---PAVGALVLGTSDLAKDLHAAHTAQRLPMITSLGLCLLAARAYGLAVLDGVHLDLNDDEGFAASCRQGRELGFDGKTLIHPKTIAACNAAFAPDADEIAHAHRIIAAHAEAAASGKGVVLVDGKLVENLHVENARRLVALAEAIAAL 289
BLAST of NO30G00560 vs. NCBI_GenBank
Match: WP_045581980.1 (CoA ester lyase [Azospirillum thiophilum] >KJR66686.1 malyl-CoA thiolesterase [Azospirillum thiophilum] >ALG69636.1 malyl-CoA thiolesterase [Azospirillum thiophilum]) HSP 1 Score: 259.2 bits (661), Expect = 1.900e-65 Identity = 139/286 (48.60%), Postives = 188/286 (65.73%), Query Frame = 0 Query: 58 RPLRSVLFTPGSRIDKMRKALTQVPADVLAFDLEDSVSYDRKVEAREQVKLALAEDTSPVSLSSRRYITVRVNCQGSKWWTEDLAAMAGTGKVDAVIIPKVQNADTLITANELLSRYGASPRMAIWAMIETPAAVMNIKEISQSANFVPRLEALMIGTSDLTNELHALHHPDRTPLIYSLSSCVVAARAFKLRVIDGVHLNLNDPEGFAAACAQGRALGFDGKSLIHPKTVAAANKAFGPRPDELAHAERLLQAWRDAQAHGEGLAVVDGQLIEMLHVEEAHRLLA 344 RP RSVL+ PGS + K +PAD L DLED+V+ D K AR+ + ALA RR + VR N + W +DL A +G DAV++PKV++AD + A +L + GA R ++W M+ETP ++N KEI+ ++ P + AL++GTSDL +LHA H R P+I SL C++AARA+ L V+DGVHL+LND EGFAA+C QGR LGFDGK+LIHPKT+AA N AF P +E+A A R++ A +A A G G+ +VDG+L+E LHVE A RL+A Sbjct: 6 RPRRSVLYMPGSNARALEKG-RSLPADGLILDLEDAVAPDAKAAARDTIASALA-----AGGYGRRELIVRTNGLNTPWGYDDLRMAAASG-ADAVLLPKVESADAVRQAEAVLRQAGAPARQSVWCMMETPLGILNAKEIAGAS---PAVGALVLGTSDLAKDLHAAHTAQRLPMITSLGLCLLAARAYGLAVLDGVHLDLNDDEGFAASCRQGRELGFDGKTLIHPKTIAACNDAFAPDAEEIAQAHRIIAAHAEAAAAGRGVVLVDGKLVETLHVENARRLVA 281
BLAST of NO30G00560 vs. NCBI_GenBank
Match: WP_029007883.1 (CoA ester lyase [Azospirillum halopraeferens]) HSP 1 Score: 257.7 bits (657), Expect = 5.600e-65 Identity = 143/295 (48.47%), Postives = 188/295 (63.73%), Query Frame = 0 Query: 58 RPLRSVLFTPGSRIDKMRKALTQVPADVLAFDLEDSVSYDRKVEAREQVKLALAEDTSPVSLSSRRYITVRVNCQGSKWWTEDLAAMAGTGKVDAVIIPKVQNADTLITANELLSRYGASPRMAIWAMIETPAAVMNIKEISQSANFVPRLEALMIGTSDLTNELHALHHPDRTPLIYSLSSCVVAARAFKLRVIDGVHLNLNDPEGFAAACAQGRALGFDGKSLIHPKTVAAANKAFGPRPDELAHAERLLQAWRDAQAHGEGLAVVDGQLIEMLHVEEAHRLLATQLNIEAME 353 RP RSVL+ PGS + K T +PAD L DLED+V+ D K AR+ ++ ALA R + VRVN S W +DL MA T DAV++PKV++AD + A+ +L GA +A+W M+ETP ++N I A +PR AL++GTSDL +LHA H PDR P+I +L C++AARA+ ++DGVHL+L D GFAAAC QGR LGFDGK+LIHPKT+AA N AF P DE+ R++ A A A G+G+ VVDG+L+E LHVE A RL+A I A+E Sbjct: 6 RPRRSVLYMPGSNARALEKGRT-LPADGLILDLEDAVAPDAKAAARDTIRAALA-----AGGYGGRELVVRVNGLASPWGYDDL-VMAATSGADAVLLPKVESADAVRQADAVLRAAGAPQTLAVWCMMETPLGMLNAAAI---AGALPRPGALVMGTSDLAKDLHAAHTPDRLPMITALGLCLLAARAYGHAILDGVHLDLADDAGFAAACRQGRELGFDGKTLIHPKTIAACNAAFAPAADEIESCRRIIDAHAAAVAEGKGVVVVDGRLVENLHVENARRLVALAAAIAALE 290
BLAST of NO30G00560 vs. NCBI_GenBank
Match: WP_094305137.1 (CoA ester lyase [Azospirillum brasilense] >OYD82610.1 CoA ester lyase [Azospirillum brasilense]) HSP 1 Score: 257.3 bits (656), Expect = 7.400e-65 Identity = 139/297 (46.80%), Postives = 192/297 (64.65%), Query Frame = 0 Query: 58 RPLRSVLFTPGSRIDKMRKALTQVPADVLAFDLEDSVSYDRKVEAREQVKLALAEDTSPVSLSSRRYITVRVNCQGSKWWTEDLAAMAGTGKVDAVIIPKVQNADTLITANELLSRYGASPRMAIWAMIETPAAVMNIKEISQSANFVPRLEALMIGTSDLTNELHALHHPDRTPLIYSLSSCVVAARAFKLRVIDGVHLNLNDPEGFAAACAQGRALGFDGKSLIHPKTVAAANKAFGPRPDELAHAERLLQAWRDAQAHGEGLAVVDGQLIEMLHVEEAHRLLATQLNIEAMEAS 355 RP RSVL+ PGS + K +PAD L DLED+V+ D K EAR +K ++A R + VR N + W +DL A +G DAV++PKV++AD + A +L G+ IW M+ETP ++N KEI+ ++ P+L L++GTSDL +LHA H DR P++ SL C++AARA+ L ++DGVHL+LND GFA +C QGR LGFDGK+LIHPKT+AA N AF P +E+A A R++QA +A A G+G+ +VDG+L+E LHVE A RL+A I A+EA+ Sbjct: 6 RPRRSVLYMPGSNARALEKG-RSLPADGLILDLEDAVAPDAKAEARATIKASIA-----AGGYGGRELVVRTNGLNTPWGYDDLVMAAASG-ADAVLLPKVESADMVRQAEAVLRANGSPDGQTIWCMMETPLGMLNAKEIAGAS---PKLGGLVMGTSDLAKDLHAAHTRDRLPMLTSLGLCLLAARAYGLAILDGVHLDLNDDAGFADSCTQGRELGFDGKTLIHPKTIAACNAAFAPGEEEVAQAHRIIQAHAEAVAQGKGVVLVDGRLVENLHVENARRLVALAEAIRALEAA 292
BLAST of NO30G00560 vs. NCBI_GenBank
Match: WP_089945366.1 (CoA ester lyase [Candidatus Entotheonella palauensis] >ETX05817.1 (3S)-malyl-CoA thiolesterase [Candidatus Entotheonella gemina]) HSP 1 Score: 256.9 bits (655), Expect = 9.600e-65 Identity = 139/296 (46.96%), Postives = 196/296 (66.22%), Query Frame = 0 Query: 58 RPLRSVLFTPGSRIDKMRKALTQVPADVLAFDLEDSVSYDRKVEAREQVKLALAEDTSPVSLSSRRYITVRVNCQGSKWWTEDLAAMAGTGKVDAVIIPKVQNADTLITANELLSRYGASPRMAIWAMIETPAAVMNIKEISQSANFVPRLEALMIGTSDLTNELHALHHPDRTPLIYSLSSCVVAARAFKLRVIDGVHLNLNDPEGFAAACAQGRALGFDGKSLIHPKTVAAANKAFGPRPDELAHAERLLQAWRDAQAHGEGLAVVDGQLIEMLHVEEAHRLLATQLNIEAMEA 354 RP RS+LF PGS + KA T +PAD L FDLED+V+ D KV AREQV A+ R + VR N + W +DLAA+A G AV++PKV++AD + +L+ +G +AIW M+ETP ++ + I+ ++ PR+ AL++GTSDLT +L A H +RTPL++SL C++ RA+ L V+DGVHL L+D EGFA C QG +GFDGK+LIHPKT+ AAN A+ P P+++A A R+++A +A+A G+G+ +VDGQLIE LHVE A R++ +I A+EA Sbjct: 6 RPRRSMLFMPGSNARAIEKAKT-LPADGLIFDLEDAVAPDAKVMAREQVCAAVR-----AGGYGGRELVVRANALTTLWGRDDLAAVATCG-AHAVLVPKVESADGVRQVISILTEHGGPDSLAIWCMLETPLGILRAESIATAS---PRVAALVMGTSDLTKDLQAKHTRERTPLLHSLGHCLLVGRAYGLVVLDGVHLELSDDEGFAEVCRQGAEMGFDGKTLIHPKTIDAANAAYAPSPEDVAWARRVMEAHAEAEAKGQGVVLVDGQLIENLHVESAQRVVRIAESIAALEA 291
BLAST of NO30G00560 vs. NCBI_GenBank
Match: WP_042688546.1 (CoA ester lyase [Azospirillum sp. B506]) HSP 1 Score: 256.9 bits (655), Expect = 9.600e-65 Identity = 141/294 (47.96%), Postives = 189/294 (64.29%), Query Frame = 0 Query: 58 RPLRSVLFTPGSRIDKMRKALTQVPADVLAFDLEDSVSYDRKVEAREQVKLALAEDTSPVSLSSRRYITVRVNCQGSKWWTEDLAAMAGTGKVDAVIIPKVQNADTLITANELLSRYGASPRMAIWAMIETPAAVMNIKEISQSANFVPRLEALMIGTSDLTNELHALHHPDRTPLIYSLSSCVVAARAFKLRVIDGVHLNLNDPEGFAAACAQGRALGFDGKSLIHPKTVAAANKAFGPRPDELAHAERLLQAWRDAQAHGEGLAVVDGQLIEMLHVEEAHRLLATQLNIEAM 352 RP RSVL+ PGS + K +PAD L DLED+V+ D K AR+ + ALA RR + VRVN + W +DL A +G DAV++PKV++AD + A +L GA A+W M+ETP ++N KEI+ ++ P++ L++GTSDL +LHA H R P+I SL C++AARAF L V+DGVHL+LND EGFAA+C QGR LGFDGK+LIHPKT+AA N AF P E+A A R++ A +A A G+G+ +VDG+L+E LHVE A RL+ I A+ Sbjct: 6 RPRRSVLYMPGSNARALEKG-RSLPADGLILDLEDAVAPDAKAMARDTIAGALA-----AGGYGRRELIVRVNGLNTPWGYDDLRMAAASG-ADAVLLPKVESADAVRQAEAVLRSAGAPDGQAVWCMMETPLGILNAKEIAGAS---PKIGGLVLGTSDLAKDLHAAHTAQRLPMITSLGLCLLAARAFGLAVLDGVHLDLNDDEGFAASCRQGRELGFDGKTLIHPKTIAACNAAFAPDAGEIAQAHRIIAAHAEAAAAGQGVVLVDGKLVETLHVENARRLVTLAEAIAAL 289 The following BLAST results are available for this feature:
BLAST of NO30G00560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO30G00560 ID=NO30G00560|Name=NO30G00560|organism=Nannochloropsis oceanica|type=gene|length=4980bpback to top protein sequence of NO30G00560.3 >NO30G00560.3-protein ID=NO30G00560.3-protein|Name=NO30G00560.3|organism=Nannochloropsis oceanica|type=polypeptide|length=298bpback to top protein sequence of NO30G00560.2 >NO30G00560.2-protein ID=NO30G00560.2-protein|Name=NO30G00560.2|organism=Nannochloropsis oceanica|type=polypeptide|length=298bpback to top protein sequence of NO30G00560.1 >NO30G00560.1-protein ID=NO30G00560.1-protein|Name=NO30G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=376bpback to top Synonyms
Publications
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