NO30G00500, NO30G00500 (gene) Nannochloropsis oceanica

Overview
NameNO30G00500
Unique NameNO30G00500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length700
Alignment locationchr30:200573..201272 +

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal protein l30
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:200573..201272 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR029064L30e-like
IPR000231Ribosomal_L30e
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
Homology
[Close]
BLAST of NO30G00500 vs. NCBI_GenBank
Match: EWM20590.1 (ribosomal protein l30 [Nannochloropsis gaditana])

HSP 1 Score: 197.2 bits (500), Expect = 2.700e-47
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0 
Query:    1 MAPAAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAKVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKFFRVSVLSVTNPGDSDI 106
            MAP AKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKA VVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGK++RVSVLSVTNPGDSDI
Sbjct:   27 MAPTAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDI 131
[Close]
BLAST of NO30G00500 vs. NCBI_GenBank
Match: XP_009039984.1 (hypothetical protein AURANDRAFT_31107 [Aureococcus anophagefferens] >EGB05336.1 hypothetical protein AURANDRAFT_31107 [Aureococcus anophagefferens])

HSP 1 Score: 160.2 bits (404), Expect = 3.600e-36
Identity = 78/110 (70.91%), Postives = 98/110 (89.09%), Query Frame = 0 
Query:    1 MAPAAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAKVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKFFRVSVLSVTNPGDSDIARPAE 111
            MAP AKKSKK++E++NSRLQLVMKSGK +LGYK +LKTLR+NK+K+V++++N PPLRKSE+EYYAMLSK + I YNGSN DLGTACGK+F+VS+L+V +PGDSDI R  E
Sbjct:    1 MAP-AKKSKKSVENLNSRLQLVMKSGKVALGYKTSLKTLRSNKSKLVLLANNTPPLRKSEVEYYAMLSKCQVIHYNGSNVDLGTACGKYFKVSMLTVIDPGDSDIVRSTE 109
[Close]
BLAST of NO30G00500 vs. NCBI_GenBank
Match: ORX51741.1 (60S ribosomal protein L30-like protein [Piromyces finnis] >ORX88113.1 60S ribosomal protein L30-like protein [Anaeromyces robustus] >OUM62818.1 hypothetical protein PIROE2DRAFT_10797 [Piromyces sp. E2] >OWF37033.1 60S ribosomal protein L30 [Mizuhopecten yessoensis])

HSP 1 Score: 159.8 bits (403), Expect = 4.700e-36
Identity = 81/107 (75.70%), Postives = 91/107 (85.05%), Query Frame = 0 
Query:    4 AAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAKVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKFFRVSVLSVTNPGDSDIARPAE 111
            A KKSKK+IESINSRL LVMKSGK SLGYK+TLKTLR  K+K+VIIS NCPPLRKSE+EYYAMLSKT    YNG+N DLGTACGK+FRV VLS+T+ GDSDI +  E
Sbjct:    3 AQKKSKKSIESINSRLALVMKSGKYSLGYKQTLKTLRQGKSKLVIISGNCPPLRKSELEYYAMLSKTGVHHYNGNNIDLGTACGKYFRVGVLSITDAGDSDIIKSQE 109
[Close]
BLAST of NO30G00500 vs. NCBI_GenBank
Match: CBN74847.1 (ribosomal protein rpl30 [Ectocarpus siliculosus])

HSP 1 Score: 158.7 bits (400), Expect = 1.100e-35
Identity = 80/107 (74.77%), Postives = 95/107 (88.79%), Query Frame = 0 
Query:    1 MAPAAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAKVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKFFRVSVLSVTNPGDSDIAR 108
            MAP  KKSKKAIES+N+RLQLVMKSGKASLGYK T+K++R+ +AK+V+IS+NCPPLRKSEIEY+AML+K     Y GSNTDLGTACGK+FRVSVLS+T+ GDSDI R
Sbjct:    1 MAP-GKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILR 106
[Close]
BLAST of NO30G00500 vs. NCBI_GenBank
Match: ORX80091.1 (60S ribosomal protein [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 158.7 bits (400), Expect = 1.100e-35
Identity = 79/110 (71.82%), Postives = 94/110 (85.45%), Query Frame = 0 
Query:    1 MAPAAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAKVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKFFRVSVLSVTNPGDSDIARPAE 111
            MAP  KKSKK++ESINSRL LVMKSGK++LGYK TLK++RN KAK++I+S NCPPLRKSEIEYYAMLSKT    YNG+N +LGTACGK+FRV VLS+T+ GDSDI +  E
Sbjct:    1 MAP-IKKSKKSVESINSRLALVMKSGKSTLGYKSTLKSIRNGKAKLIILSGNCPPLRKSEIEYYAMLSKTSVHHYNGNNIELGTACGKYFRVGVLSITDAGDSDILKTQE 109
[Close]
BLAST of NO30G00500 vs. NCBI_GenBank
Match: ORX84637.1 (60S ribosomal protein [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 158.3 bits (399), Expect = 1.400e-35
Identity = 79/110 (71.82%), Postives = 93/110 (84.55%), Query Frame = 0 
Query:    1 MAPAAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAKVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKFFRVSVLSVTNPGDSDIARPAE 111
            MAP  KKSKK++ESINSRL LVMKSGK++LGYK TLK +RN KAK++I+S NCPPLRKSEIEYYAMLSKT    YNG+N +LGTACGK+FRV VLS+T+ GDSDI +  E
Sbjct:    1 MAP-IKKSKKSVESINSRLALVMKSGKSTLGYKSTLKAIRNGKAKLIILSGNCPPLRKSEIEYYAMLSKTSVHHYNGNNIELGTACGKYFRVGVLSITDAGDSDILKTQE 109
[Close]
BLAST of NO30G00500 vs. NCBI_GenBank
Match: ORY56291.1 (60S ribosomal protein [Neocallimastix californiae] >ORY78286.1 60S ribosomal protein [Neocallimastix californiae])

HSP 1 Score: 158.3 bits (399), Expect = 1.400e-35
Identity = 79/107 (73.83%), Postives = 91/107 (85.05%), Query Frame = 0 
Query:    4 AAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAKVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKFFRVSVLSVTNPGDSDIARPAE 111
            A KKSKK++ESINSRL LVMKSGK +LGYK+TLKTLR  K+K+VIIS NCPPLRKSE+EYYAMLSKT    YNG+N DLGTACGK+FRV VLS+T+ GDSDI +  E
Sbjct:    3 AQKKSKKSVESINSRLALVMKSGKYTLGYKQTLKTLRQGKSKLVIISGNCPPLRKSELEYYAMLSKTGVHHYNGNNIDLGTACGKYFRVGVLSITDAGDSDIIKSQE 109
[Close]
BLAST of NO30G00500 vs. NCBI_GenBank
Match: CDH59459.1 (60s ribosomal protein l30 [Lichtheimia corymbifera JMRC:FSU:9682])

HSP 1 Score: 157.5 bits (397), Expect = 2.300e-35
Identity = 78/105 (74.29%), Postives = 88/105 (83.81%), Query Frame = 0 
Query:    1 MAPAAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAKVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKFFRVSVLSVTNPGDSDI 106
            MAPA KKSKK +ESINSRLQLV KSGK +LGYK TLKTLR  KAK+++I+ NCPPLRKSE+EYYAMLSKT    YNG+N DLGTACGK FR  VLS+T+ GDSDI
Sbjct:   18 MAPAVKKSKKNVESINSRLQLVTKSGKYTLGYKSTLKTLRQGKAKLIVIAGNCPPLRKSELEYYAMLSKTGVHHYNGNNIDLGTACGKLFRTGVLSITDAGDSDI 122
[Close]
BLAST of NO30G00500 vs. NCBI_GenBank
Match: CDH56723.1 (60s ribosomal protein l30 [Lichtheimia corymbifera JMRC:FSU:9682])

HSP 1 Score: 157.5 bits (397), Expect = 2.300e-35
Identity = 78/105 (74.29%), Postives = 88/105 (83.81%), Query Frame = 0 
Query:    1 MAPAAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAKVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKFFRVSVLSVTNPGDSDI 106
            MAPA KKSKK +ESINSRLQLV KSGK +LGYK TLKTLR  KAK+++I+ NCPPLRKSE+EYYAMLSKT    YNG+N DLGTACGK FR  VLS+T+ GDSDI
Sbjct:  237 MAPAVKKSKKNVESINSRLQLVTKSGKYTLGYKSTLKTLRQGKAKLIVIAGNCPPLRKSELEYYAMLSKTGVHHYNGNNIDLGTACGKLFRTGVLSITDAGDSDI 341
[Close]
BLAST of NO30G00500 vs. NCBI_GenBank
Match: CDS10564.1 (Putative 60S ribosomal protein [Lichtheimia ramosa])

HSP 1 Score: 157.5 bits (397), Expect = 2.300e-35
Identity = 78/105 (74.29%), Postives = 88/105 (83.81%), Query Frame = 0 
Query:    1 MAPAAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAKVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKFFRVSVLSVTNPGDSDI 106
            MAPA KKSKK +ESINSRLQLV KSGK +LGYK TLKTLR  KAK+++I+ NCPPLRKSE+EYYAMLSKT    YNG+N DLGTACGK FR  VLS+T+ GDSDI
Sbjct:    1 MAPAVKKSKKNVESINSRLQLVTKSGKYTLGYKSTLKTLRQGKAKLIVIAGNCPPLRKSELEYYAMLSKTGVHHYNGNNIDLGTACGKLFRTGVLSITDAGDSDI 105
The following BLAST results are available for this feature:
BLAST of NO30G00500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20590.12.700e-4796.19ribosomal protein l30 [Nannochloropsis gaditana][more]
XP_009039984.13.600e-3670.91hypothetical protein AURANDRAFT_31107 [Aureococcus... [more]
ORX51741.14.700e-3675.7060S ribosomal protein L30-like protein [Piromyces ... [more]
CBN74847.11.100e-3574.77ribosomal protein rpl30 [Ectocarpus siliculosus][more]
ORX80091.11.100e-3571.8260S ribosomal protein [Basidiobolus meristosporus ... [more]
ORX84637.11.400e-3571.8260S ribosomal protein [Basidiobolus meristosporus ... [more]
ORY56291.11.400e-3573.8360S ribosomal protein [Neocallimastix californiae]... [more]
CDH59459.12.300e-3574.2960s ribosomal protein l30 [Lichtheimia corymbifera... [more]
CDH56723.12.300e-3574.2960s ribosomal protein l30 [Lichtheimia corymbifera... [more]
CDS10564.12.300e-3574.29Putative 60S ribosomal protein [Lichtheimia ramosa... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR051ncniR051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR102ngnoR102Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00500.1NO30G00500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605920gene_9269Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101276g1gene9817Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00500.1NO30G00500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00500 ID=NO30G00500|Name=NO30G00500|organism=Nannochloropsis oceanica|type=gene|length=700bp
ATGGCCCCAGCAGCGAAGAAGTCGgtacgtgctcgcggcgtttgaagcgg
gagtcgtagagggatgagagagggacaggaggggtgtacgggtggggaat
gtagacggatgtgggagtggagcaccactcttcgaaactggtagggcgtg
gtggtgctgcgatttgcctctcagtcagtgtagggtgaaccccgccgcag
acttatgtataaacttgagctgttcaaggaatgtcactgcatgccttccg
gcttggaaaggcattgtcctattttcccggttgggttcagtcctctccgc
ctaggattgccccaacccgcgcttccgtcttcccatcacgtctctcattc
cttgtcccttccctaccccttttctttcccaatccaagcagAAGAAGGCA
ATCGAGTCCATCAACTCGCGCCTGCAGCTGGTGATGAAGTCCGGAAAGGC
CTCACTCGGCTACAAGGAGACACTTAAGACCCTGCGCAACAACAAGGCCA
AGGTCGTCATCATCAGCAGCAACTGCCCGCCCCTCCGCAAGTCCGAGATT
GAGTACTATGCCATGTTGAGCAAGACCGAGACAATCCTCTACAACGGGAG
CAACACGGATCTGGGCACGGCCTGCGGGAAGTTCTTCCGTGTGTCTGTGT
TGTCCGTGACCAACCCCGGCGACTCGGACATTGCTCGCCCTGCGGAATAG
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protein sequence of NO30G00500.1

>NO30G00500.1-protein ID=NO30G00500.1-protein|Name=NO30G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MAPAAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAKVVIIS
SNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKFFRVSVLSVTNP
GDSDIARPAE*
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Synonyms
Publications