NO30G00400, NO30G00400 (gene) Nannochloropsis oceanica

Overview
NameNO30G00400
Unique NameNO30G00400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3437
Alignment locationchr30:171794..175230 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:171794..175230 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO30G00400 vs. NCBI_GenBank
Match: EWM20126.1 (hypothetical protein Naga_101689g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 180.3 bits (456), Expect = 8.600e-42
Identity = 90/128 (70.31%), Postives = 103/128 (80.47%), Query Frame = 0
Query:    1 MPRFHALLLLLLSVLSLLALTHGQASFAEDIFADEDEVPILGYDTAGNPIKPEVKREINTQVHTTNPDLGKRAQKVDLPFIACDVCTLVMTELHNQTAVLATKAENLVNGKPKKSVMLKLTKRVCDHA 129
            MPR  A  LLL++ LSLL+   GQASFAEDI+  EDE+P LGYDTAGNPIKPE KRE+NTQVHTTNPDLGKRAQK DLP+IACDVC L M +L N T  LA + ENL  GKPKKS++LK TK+VCD+A
Sbjct:    1 MPRLQAFFLLLVASLSLLSHVRGQASFAEDIWESEDEIPPLGYDTAGNPIKPETKRELNTQVHTTNPDLGKRAQKTDLPYIACDVCMLTMEQLSNVTRNLALREENLHKGKPKKSLVLKATKKVCDYA 128          
BLAST of NO30G00400 vs. NCBI_GenBank
Match: XP_015775852.1 (PREDICTED: uncharacterized protein LOC107353970 [Acropora digitifera])

HSP 1 Score: 74.7 bits (182), Expect = 5.100e-10
Identity = 48/173 (27.75%), Postives = 85/173 (49.13%), Query Frame = 0
Query:   73 AQKVDLPFIACDVCTLVMTELHNQTAVLATKAENLVNGKPKKSVMLKLTKRVCDHATFEGRWISYYDIQEKERVGGIALKLVKQPESGMCEVEAETIAKSCSDLFKKDHVERDEVVDDLVEQVISKSGLVTKYCKDISSRCSKNTQSLMEKGKRRDHKFHVKTKEAKSYDRIM 246
            A K DLP+I C+ C   +  L+ +T  +       +N    +  ++ L ++ C     EG WIS +D+ EK       L+L +Q + G C+ E +TI+K+C +       +  E+   L +  +S S L+ + C  +SS C +    L    ++ D KF++ T++ K  D I+
Sbjct:   45 AVKEDLPYIKCETCQKAVKHLYGKTQEMRGGGTKKLN----EDKIIDLVEKSCSPEKEEGSWISKFDLIEKNG----ELRLSEQKDVGKCQRECQTISKACEESVADVDTDLAEL---LWKNKLSLSKLINEVCYSMSSVCKEKRPKLKPGERKDDEKFNILTEDEKKADEIL 206          
BLAST of NO30G00400 vs. NCBI_GenBank
Match: CBN80275.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 72.0 bits (175), Expect = 3.300e-9
Identity = 60/168 (35.71%), Postives = 85/168 (50.60%), Query Frame = 0
Query:   75 KVDLPFIACDVCTLVMTELHNQTAVLATKAENLVNGKPKKSVMLKLTKRVCDHATFEGRWISYYDIQEKERVGGIALKLVKQPESGMCEVEAETIAKSCSDLFKKDHVERDEVVDDLVEQVISKSGLVTKYCKDISSRCSKNTQSLMEKGKRRDHKFHVKTKEAKSYD 243
            K DL  I C VC  +   L+ + A +   A     GK  +  +  + +  CD AT EGRWI+ YDI E+    G  L+L KQ     C+ E ETIAKSC+ L   D ++ +EVV  L +  +  S L    C + S RCS   +    K  R+D++F  KT  AK ++
Sbjct:   32 KGDLAAIKCGVCQGLAEHLYEKVAEMREAAP---FGKVHEDDISTVIEGACDPATKEGRWITEYDIVEE----GGYLELKKQDSFSHCKEECETIAKSCTVLV-DDELDVEEVVVALWKNKLGLSELQKAACGEWSDRCSGKKRVKAPK-DRQDYEFEPKT--AKDFE 188          
BLAST of NO30G00400 vs. NCBI_GenBank
Match: GAX82084.1 (hypothetical protein CEUSTIGMA_g9512.t1 [Chlamydomonas eustigma])

HSP 1 Score: 70.5 bits (171), Expect = 9.600e-9
Identity = 53/186 (28.49%), Postives = 89/186 (47.85%), Query Frame = 0
Query:   73 AQKVDLPFIACDVCTLVMTELHNQTAVLATKAENLVNGKPKKSVMLKLTKRVCDHATFEGRWISYYDIQEKERVGGIALKLVKQPESGMCEVEAETIAKSCSDLFKKDHVERDEVVDDLVEQV---ISKSGLVTKYCKDISSRCSKNTQSLMEKGKRRDHKFHVKTKEAKSYDRIMDAFAEAGVLG 256
            A K DL +I C  C  +  +     +V   K+E     K ++S +L + + +CD  T  G WI+  D+QE     G  L+LV+ P+SG C  E  TIA++CSD+ +      D  + +L E +    S+       CK+++S C +    L  K +    +F   T++  S  + M    ++G+ G
Sbjct:   58 AVKTDLKYIICGTCEGIAKQA--VLSVKRNKSEETPIKKYRESDVLDMLEEICDPDTAAGEWITNIDLQET----GDRLQLVEMPQSGKCRRECRTIARACSDIME------DADITELSEGLWHGFSRGDTSKLLCKELTSSCKRKIPPL-PKDRPVGEEFQPLTEDELSMRQTMRGMKKSGMSG 230          
BLAST of NO30G00400 vs. NCBI_GenBank
Match: XP_004287526.1 (PREDICTED: uncharacterized protein LOC101311604 [Fragaria vesca subsp. vesca])

HSP 1 Score: 68.9 bits (167), Expect = 2.800e-8
Identity = 43/142 (30.28%), Postives = 70/142 (49.30%), Query Frame = 0
Query:   73 AQKVDLPFIACDVCTLVMTELHNQTAVLATKAENLVNGKPKKSVMLKLTKRVCDHATFEGRWISYYDIQEKERVGGIALKLVKQPESGMCEVEAETIAKSCSDLFKKDHVERDEVVDDLVEQVISKSGLVTKYCKDISSRCS 215
            A+K D+PFI C VC  +  +LH+Q   +  K   +   K  +  ++++T+ VC+    E  WI   DI E+    G  L+LV+Q   G C  E +TI ++C ++         +V + L +        V   CKD+S+ CS
Sbjct:   34 ARKEDIPFIKCQVCEKLAAQLHHQ---VEKKRAEIQPKKISEYQIIEITENVCNLKKAEADWILLIDIVEQ----GDKLQLVEQESEGQCNSECKTIERACQEVLGYSDT---DVAEYLYKSKPDIGSFVNYLCKDLSTACS 165          
BLAST of NO30G00400 vs. NCBI_GenBank
Match: XP_009802306.1 (PREDICTED: uncharacterized protein LOC104247871 [Nicotiana sylvestris])

HSP 1 Score: 68.9 bits (167), Expect = 2.800e-8
Identity = 45/143 (31.47%), Postives = 74/143 (51.75%), Query Frame = 0
Query:   73 AQKVDLPFIACDVCTLVMTELHNQTAVLATKAENLVNGKPKKSVMLKLTKRVCDHATFEGRWISYYDIQEKERVGGIALKLVKQPESGMCEVEAETIAKSCSDLFKKDHVERDEVVDDLVEQVISKSGLVTKYCKDISSRCSK 216
            A+K D+P+I C VC  +  +L+NQ   +  K   +   K  +  ++++++ VC+    E  WI   DI E+    G  L+LV+Q   G C  E +TI ++C D+   D+ + D V + L +       L +  CKD+S  CSK
Sbjct:   32 ARKEDIPYIKCQVCEKLAYQLYNQ---VQNKRAEISPKKISEYQIIEISENVCNLKKQEADWILKIDIVEQ----GDRLELVEQDSEGQCNSECKTIERACQDVM--DYSDTD-VAEYLYKHNPDLDSLKSFLCKDLSKSCSK 164          
BLAST of NO30G00400 vs. NCBI_GenBank
Match: XP_016472040.1 (PREDICTED: uncharacterized protein LOC107794096 [Nicotiana tabacum])

HSP 1 Score: 68.9 bits (167), Expect = 2.800e-8
Identity = 45/143 (31.47%), Postives = 74/143 (51.75%), Query Frame = 0
Query:   73 AQKVDLPFIACDVCTLVMTELHNQTAVLATKAENLVNGKPKKSVMLKLTKRVCDHATFEGRWISYYDIQEKERVGGIALKLVKQPESGMCEVEAETIAKSCSDLFKKDHVERDEVVDDLVEQVISKSGLVTKYCKDISSRCSK 216
            A+K D+P+I C VC  +  +L+NQ   +  K   +   K  +  ++++++ VC+    E  WI   DI E+    G  L+LV+Q   G C  E +TI ++C D+   D+ + D V + L +       L +  CKD+S  CSK
Sbjct:   32 ARKEDIPYIKCQVCEKLAYQLYNQ---VQNKRAEISPKKISEYQIIEISENVCNLKKQEADWILKIDIVEQ----GDRLELVEQDSEGQCNSECKTIERACQDVM--DYSDTD-VAEYLYKHNPDLDSLKSFLCKDLSKSCSK 164          
BLAST of NO30G00400 vs. NCBI_GenBank
Match: XP_002170798.2 (PREDICTED: uncharacterized protein LOC100207705 [Hydra vulgaris])

HSP 1 Score: 68.2 bits (165), Expect = 4.800e-8
Identity = 52/181 (28.73%), Postives = 86/181 (47.51%), Query Frame = 0
Query:   77 DLPFIACDVCTLVMTELHNQTAVLATKAENLVNGKP-KKSVMLKLTKRVCDHATFEGRWISYYDIQEKERVGGIALKLVKQPESGMCEVEAETIAKSCSDLFKKDHVERDEVVDDLVEQVISKSGLVTKYCKDISSRCSKNTQSLMEKGKRRDHKF-HVKTKEAKSYDRIMDAFAEAGVLG 256
            DLPFI CDVC            VL    EN  + K   +  +L + ++ CD     G WIS  DI EKE      LK+V+ P+ G C+ E +TI++SC D+      +  E+   L +  +  +  +   C  +++ C    + +  KG  +D+KF  +  KE ++ D + +  +  G+ G
Sbjct:   34 DLPFIKCDVC-------QKAAKVLFKTIENQRSEKKLDEDDVLSIVEKSCDTDVLYGDWISRLDIVEKEN----DLKVVEHPQEGKCDRECKTISRSCEDIIGDIDTDIGEL---LWKNEMKLATFINHVCYKLTNSCKAKKKYV--KGSHKDYKFVEMSEKEKQARDLMRNMKSVPGMPG 198          
BLAST of NO30G00400 vs. NCBI_GenBank
Match: XP_008352365.1 (PREDICTED: uncharacterized protein LOC103415863 [Malus domestica])

HSP 1 Score: 68.2 bits (165), Expect = 4.800e-8
Identity = 49/173 (28.32%), Postives = 79/173 (45.66%), Query Frame = 0
Query:   73 AQKVDLPFIACDVCTLVMTELHNQTAVLATKAENLVNGKPKKSVMLKLTKRVCDHATFEGRWISYYDIQEKERVGGIALKLVKQPESGMCEVEAETIAKSCSDLFKKDHVERDEVVDDLVEQVISKSGLVTKYCKDISSRCSKNTQSLMEKGKRRDHKFHVKTKEAKSYDRIM 246
            A+K D+PFI C VC  + ++LH Q   +  K   +   K  +  ++++++ VC+    E  WI   DI EK    G  L+LV Q   G C  E +TI ++C ++         +V + L         LV   CKD +  CS      + K +     F  K+++    +RIM
Sbjct:   34 ARKEDIPFIKCQVCEKLASQLHQQ---VEKKRAEIAPKKISEYQIIEISENVCNLKKQEADWILQIDIVEK----GDKLELVDQGSEGQCNSECKTIERACQEVLGYSDT---DVAEYLYTSKPDXGSLVNYLCKDFTKACSTKPPP-VPKNRIPGEAFVAKSEKEAEMERIM 195          
BLAST of NO30G00400 vs. NCBI_GenBank
Match: XP_019436205.1 (PREDICTED: nucleophosmin-like [Lupinus angustifolius])

HSP 1 Score: 68.2 bits (165), Expect = 4.800e-8
Identity = 44/153 (28.76%), Postives = 75/153 (49.02%), Query Frame = 0
Query:   63 HTTNPDLGKRAQKVDLPFIACDVCTLVMTELHNQTAVLATKAENLVNGKPKKSVMLKLTKRVCDHATFEGRWISYYDIQEKERVGGIALKLVKQPESGMCEVEAETIAKSCSDLFKKDHVERDEVVDDLVEQVISKSGLVTKYCKDISSRCSK 216
            H++   +G  A+K D+P+I C VC  +  ELH+Q   +  K   +   K  +  ++++ + +C+    E  WI   DI EKE      L+LV+Q   G C  E +TI ++C ++         +V + L +       L+   CKD++  CSK
Sbjct:   19 HSSKKPVGV-ARKEDVPYIKCQVCEKLAKELHHQ---VYNKQVQISPKKISEYQIIEMAENICNLKKAEADWILRIDIVEKED----RLELVEQDSEGQCNSECKTIERACQEVMGYSDT---DVAEYLYKSKPDVDSLLNYLCKDLTKACSK 160          
The following BLAST results are available for this feature:
BLAST of NO30G00400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20126.18.600e-4270.31hypothetical protein Naga_101689g2, partial [Nanno... [more]
XP_015775852.15.100e-1027.75PREDICTED: uncharacterized protein LOC107353970 [A... [more]
CBN80275.13.300e-935.71conserved unknown protein [Ectocarpus siliculosus][more]
GAX82084.19.600e-928.49hypothetical protein CEUSTIGMA_g9512.t1 [Chlamydom... [more]
XP_004287526.12.800e-830.28PREDICTED: uncharacterized protein LOC101311604 [F... [more]
XP_009802306.12.800e-831.47PREDICTED: uncharacterized protein LOC104247871 [N... [more]
XP_016472040.12.800e-831.47PREDICTED: uncharacterized protein LOC107794096 [N... [more]
XP_002170798.24.800e-828.73PREDICTED: uncharacterized protein LOC100207705 [H... [more]
XP_008352365.14.800e-828.32PREDICTED: uncharacterized protein LOC103415863 [M... [more]
XP_019436205.14.800e-828.76PREDICTED: nucleophosmin-like [Lupinus angustifoli... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR051ncniR051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00400.1NO30G00400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605965gene_9280Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00400.1NO30G00400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00400 ID=NO30G00400|Name=NO30G00400|organism=Nannochloropsis oceanica|type=gene|length=3437bp
CTGGCCTGTCAGTGAAGATAGGCGAATAATGTAAGAATATGTTGTCCTAG
TATATGAATACAGCATGCTTGTAGCATGTTGTGCCGGCCTCTATGTCGGA
AGGTGGGATTGAATGTCGGCTTGGCCCTCGCATGCAATGGCGCGCCATCG
TATCTCTCACTCATTCGCCGACCTCGCCCACAATTCGAAATGTTCCTATC
TTCTTTGCTTTTGACTTGCACGGGGTCGTGCACTGCGCGATAAGCATGGT
ATATCAAGCCCATTACTATGTATCTATGAGTCCTCAGCGTAGGGCGTGAA
GGTGGATAGGGCTGTCTCAAGTCCGGGACCTGCATCTTCTTTCTCTCCCT
CCCTCCCTGCACTCCTACTTTTTCTTCCCAAGAGCGCGTGCCCGCCTCTT
GTCTAATCACCGCCCTCACCGCCCACCACATTCACCGACACAGCTTCAAC
AAAATACTGCTAGCATGCCGCGGTTCCACGCCCTCCTCCTACTCCTCCTC
TCCGTGCTCTCCCTCCTGGCTCTCACCCACGGCCAAGCCTCGTTTGCAGA
GGACATTTTCGCGGATGAGGACGAGGTGCCCATCCTGGGCTATGACACCG
CGGGCAACCCAATCAAGCCGGAGGTGAAGCGAGAGATCAACACACAgtga
gtgggcgggagggaaggaggagtgatagaaggagggtcgaggactcggcc
ttggcaacgccaagcggccggacgtgaggagggcgcctcggcacgcctct
acaagggagggagaagtgggaccctcaatattaatgtgcctttaggtggc
ttcgcatgtgactgtgatcctcctcttttccctccctccgtccctgcgcc
acagGGTGCACACGACCAACCCCGACCTGGGCAAGAGGGCGCAGAAGGTG
GACCTGCCCTTCATCGCTTGTGACGTCTGCACGCTCGTCATGACCGAGgt
aggagagaaggaagagaaggggagggggggcgagtgggttcatctgaaaa
gcagcagaggaggatcctacgacactggtgctttcaacctccttaccctc
ctcaccctccccccatccctccctccctccttttgtttgcagCTACACAA
CCAAACCGCCGTGCTGGCGACCAAGGCCGAGAATCTTGTGAACGGGAAGC
CCAAGAAGAGCGTGATGCTGAAGCTGACCAAGCGCGTGTGCGATCACGCC
ACCTTCGAGGGGCGTTGGATCTCCTACTATGACATCCAGgtagggagagg
gggagggacggaagggaggagggaaacggggaagggaggaaggggggctg
aaacgccaacccaatcatatgctcatcctccctccctccctccttccatc
ccttcttctccctgtcttgcacccccagGAGAAGGAGCGCGTGGGCGGCA
TTGCCCTCAAGCTCGTCAAGCAGCCTGAGAGCGGCATGTGCGAGgtacgt
gccccctccctccttccctccctccttccctccctccctccctccctcct
gaccctcccatttcccatcgcctttcacttatccccgttacccccctcct
tgcagGTGGAGGCGGAGACTATTGCCAAGAGCTGCTCAGACCTCTTCAAG
AAGGACCATGTGGAGCGGGATGAGgtagggagggagggaggaagggagaa
aaagaggggtaaacagaaggctacggagaagatgatttgggaagactcag
gagggaaggagaaacggagggaggggaggagggaggggggaaagggggtt
cctagccctcatttcttctttctcttctctcagctcctttcggcattacc
aattgttggtattgatgataatgaatgatcaccaatcaatgttgataatg
acatgtatattatgtttgtattatcgttaagtaatcatagtgatatgagc
tgaccacacccactaccaggtggtagacgacctgtaaatgataaaaatga
aaaataaaataataataataataataacgataaaaaaataaaaatataat
aacaataatgataattattattgttttttaattatcatcatcactaccat
caccaataccgtcacaatcatcatcatcatcatcaaagcaattgtaatat
taaaaataatgatgatatgacacgcccccccccctcccagGTGGTGGACG
ACCTGGTGGAGCAGGTCATCTCCAAGAGCGGCCTTGTCACTAAGTATTGC
AAGGACATCTCCTCCCGgtacgcacccttcctccctccctccctccctcc
ctttcctctccttgtggtccacccacccctacttctaatccctccctccc
tcccttcctccctccctagGTGCTCCAAGAACACCCAGTCCCTCATGGAG
AAGGGCAAGCGCCGCGACCACAAGTTCCATgtacgcctccctccctccct
ccctccctccctggccatcctgcccgcctcctccagcccgtcatattgac
actcccatatcccccatacacctcccaccgacatgctcatcggtctttcc
ccttccctcctttcttccctccctccctccctcctgcagGTCAAAACGAA
GGAGGCCAAGTCGTACGACAGGATCATGGACGCTTTTGCCGAGGCTGGCG
TACTGGgtagggagggagggagggagggagggagggagggagggagggca
gatgcacggacaccaaaccgaatcgctctctccctctcgagaaggtcaga
caggaagagagagaggacgggaggggggaaaggacggagggaagaaggaa
aaaagtggaatgttcatgctcaatttctccttccccccacactgcctctc
tttcctccggtagGGAATGACGACGGCACGGCGGCGCCTGACATCATGGA
CCGCTTCGACAACGTGCTGAAGATGCTCGAGGAGAACGGAGAGCTCTGAG
CGCAAGGGGCAGGCAGGCAGGGAGGGAGGGAAGGAGGGAGGAGTGAAGGG
GGAGGGAGGCGATGGGCCTTGAATTGGCTGCTCTTGTCCACGGTATGTGC
CAAGCGCCTTTGACAGGCAATAGGATGGTCGTCGCTTTGGTTTAATTTCT
ACTTAAACGAAGGGAGAGGGGCGTGTGGATCGGCGGGGGGCCGCAGACAA
TGTGGATGAGATGAGAGAGCGTATATAGAGGTGATGGGGAAGCCGGGAGG
GAAAAGGGGAGGAGAGGGGGAGGGGAGCTTCTCAATGAGTAAAACAAGAG
TGAAAATAATATATAGAGAAGGAAATGAGGAGGGGCACCTTGTCTCTACC
ACCTTCCCACCTTCCCTCCTTCCCTCCCTTTGCTCGCCCCTCAGGGTGGA
GGGCGAAAAGGGGGTGGGAGGAAGAAGGGAAGGAGGGCAGGGAGGGCAAA
GAGCACGCACGCCCTCGCGCGACGATCTATTGAAGGTGATGATCCCAACC
AAACAAAGGAAAGAAAAAGCACTGACTGGTCCCTTAC
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protein sequence of NO30G00400.1

>NO30G00400.1-protein ID=NO30G00400.1-protein|Name=NO30G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MPRFHALLLLLLSVLSLLALTHGQASFAEDIFADEDEVPILGYDTAGNPI
KPEVKREINTQVHTTNPDLGKRAQKVDLPFIACDVCTLVMTELHNQTAVL
ATKAENLVNGKPKKSVMLKLTKRVCDHATFEGRWISYYDIQEKERVGGIA
LKLVKQPESGMCEVEAETIAKSCSDLFKKDHVERDEVVDDLVEQVISKSG
LVTKYCKDISSRCSKNTQSLMEKGKRRDHKFHVKTKEAKSYDRIMDAFAE
AGVLGNDDGTAAPDIMDRFDNVLKMLEENGEL*
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Synonyms
Publications