NO30G00270, NO30G00270 (gene) Nannochloropsis oceanica

Overview
NameNO30G00270
Unique NameNO30G00270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1040
Alignment locationchr30:112867..113906 +

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Properties
Property NameValue
DescriptionClavaminate synthase-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:112867..113906 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003347JmjC_dom
Homology
[Close]
BLAST of NO30G00270 vs. NCBI_GenBank
Match: GAX14385.1 (hypothetical protein FisN_11Hh157 [Fistulifera solaris])

HSP 1 Score: 121.7 bits (304), Expect = 1.400e-24
Identity = 57/132 (43.18%), Postives = 74/132 (56.06%), Query Frame = 0 
Query:    2 YLFGNTFGEEWASFLSHYQRPPCRTCSDPDGALSFGLGPRHSGVSWHIHGPGYSEEI-------------------------CLEA---GTNAMPFICDIGPGEILHFPSMWWHAVLNLEDYNVFVSTFTQE 106
            YLFG T+ EEW++FL HY+ PPC TCSD   AL+FG+G R SGV WH+HGPG+SE I                          +E       + P  C + PG++++FP  W HA +NL+ Y VFVS FT E
Sbjct:  149 YLFGETYSEEWSTFLKHYEIPPCYTCSDWPVALAFGIGNRGSGVQWHMHGPGFSEAIHGRKHWILYPPKERPDYEKDQSSRQWMETTYWEVVSKPLECTLHPGDLIYFPDKWHHATINLDTYTVFVSAFTTE 280
[Close]
BLAST of NO30G00270 vs. NCBI_GenBank
Match: OEU07897.1 (Clavaminate synthase-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 119.0 bits (297), Expect = 8.800e-24
Identity = 55/139 (39.57%), Postives = 71/139 (51.08%), Query Frame = 0 
Query:    2 YLFGNTFGEEWASFLSHYQRPPCRTCSDPDG----ALSFGLGPRHSGVSWHIHGPGYSEEI-------------------------------CLEAGTNAMPFICDIGPGEILHFPSMWWHAVLNLEDYNVFVSTFTQE 106
            YLFG T+  EW +FL  Y+ PPC+ C +       ALSFG+G   SGV WH+HGPG+SE +                                        P  C + PG+IL+FP+MWWHA +N++DY  FVSTFTQE
Sbjct:  152 YLFGETYSSEWKNFLRSYELPPCQACDNKFDENLIALSFGIGNSGSGVQWHVHGPGFSEALHGRKHWILYPPDYRPDFHPDQTSLNWMYYNYSTITNMEDKPLECTLSPGDILYFPNMWWHATVNVDDYTAFVSTFTQE 290
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BLAST of NO30G00270 vs. NCBI_GenBank
Match: EJK62864.1 (hypothetical protein THAOC_16506 [Thalassiosira oceanica])

HSP 1 Score: 96.3 bits (238), Expect = 6.100e-17
Identity = 55/170 (32.35%), Postives = 69/170 (40.59%), Query Frame = 0 
Query:    2 YLFGNTFGEEWASFLSHYQRPPCRTCSDPDGALSFGLGPRHSGVSWHIHGPGYSEEI--------------------------------CLEAGTNA-------------------------------------MPFICDIGPGEILHFPSMWWHAVLNLEDYNVFVSTF 103
            YLFG TF ++WA FL  Y+ P C +C+    ALSFG+G   SGV WHIHGPG+SE I                                 LE  T                                        PF C I PGE+++FP  W HA +NL++Y  FVS+F
Sbjct:  132 YLFGETFTDDWAKFLRSYEIPRCNSCTREQVALSFGIGNAGSGVQWHIHGPGFSETIHGRKHWVLYPPHQRPTYNLDYASRHWMEHEYGRLENWTGVDVEEERNSHAKYMTNSDKSGPPFDILTKNQERGPSGKKPFECTIHPGEMIYFPDQWHHATINLDEYTCFVSSF 301
[Close]
BLAST of NO30G00270 vs. NCBI_GenBank
Match: BAB27534.1 (unnamed protein product [Mus musculus])

HSP 1 Score: 88.6 bits (218), Expect = 1.300e-14
Identity = 50/132 (37.88%), Postives = 60/132 (45.45%), Query Frame = 0 
Query:    1 MYLFGNTFGEEWASFLSHYQRPPCRTCSDPDGALSFGLGPRHSGVSWHIHGPGYSE------------------------------EICLEAGTNAMPFICDIGPGEILHFPSMWWHAVLNLEDYNVFVSTF 103
            +Y FG+    EWAS   HY  PP R       A SFG+    SGV +H HGPG+SE                              EI      +A P  C I  GE+L+FP  WWHA LNL D +VF+STF
Sbjct:  140 LYFFGDNNFTEWASLFQHYSPPPFRLLGTTP-AYSFGIAGAGSGVPFHWHGPGFSEVIYGRKRWFLYPPEKTPEFHPNKTTLAWLLEIYPSLALSARPLECTIQAGEVLYFPDRWWHATLNL-DTSVFISTF 269
[Close]
BLAST of NO30G00270 vs. NCBI_GenBank
Match: AAH10800.1 (Jmjd8 protein [Mus musculus])

HSP 1 Score: 88.6 bits (218), Expect = 1.300e-14
Identity = 50/132 (37.88%), Postives = 60/132 (45.45%), Query Frame = 0 
Query:    1 MYLFGNTFGEEWASFLSHYQRPPCRTCSDPDGALSFGLGPRHSGVSWHIHGPGYSE------------------------------EICLEAGTNAMPFICDIGPGEILHFPSMWWHAVLNLEDYNVFVSTF 103
            +Y FG+    EWAS   HY  PP R       A SFG+    SGV +H HGPG+SE                              EI      +A P  C I  GE+L+FP  WWHA LNL D +VF+STF
Sbjct:  121 LYFFGDNNFTEWASLFQHYSPPPFRLLGTTP-AYSFGIAGAGSGVPFHWHGPGFSEVIYGRKRWFLYPPEKTPEFHPNKTTLAWLLEIYPSLALSARPLECTIQAGEVLYFPDRWWHATLNL-DTSVFISTF 250
[Close]
BLAST of NO30G00270 vs. NCBI_GenBank
Match: Q3TA59.2 (RecName: Full=JmjC domain-containing protein 8; AltName: Full=Jumonji domain-containing protein 8)

HSP 1 Score: 88.6 bits (218), Expect = 1.300e-14
Identity = 50/132 (37.88%), Postives = 60/132 (45.45%), Query Frame = 0 
Query:    1 MYLFGNTFGEEWASFLSHYQRPPCRTCSDPDGALSFGLGPRHSGVSWHIHGPGYSE------------------------------EICLEAGTNAMPFICDIGPGEILHFPSMWWHAVLNLEDYNVFVSTF 103
            +Y FG+    EWAS   HY  PP R       A SFG+    SGV +H HGPG+SE                              EI      +A P  C I  GE+L+FP  WWHA LNL D +VF+STF
Sbjct:  185 LYFFGDNNFTEWASLFQHYSPPPFRLLGTTP-AYSFGIAGAGSGVPFHWHGPGFSEVIYGRKRWFLYPPEKTPEFHPNKTTLAWLLEIYPSLALSARPLECTIQAGEVLYFPDRWWHATLNL-DTSVFISTF 314
[Close]
BLAST of NO30G00270 vs. NCBI_GenBank
Match: EDL22459.1 (RIKEN cDNA 2610003J06, isoform CRA_c [Mus musculus])

HSP 1 Score: 88.6 bits (218), Expect = 1.300e-14
Identity = 50/132 (37.88%), Postives = 60/132 (45.45%), Query Frame = 0 
Query:    1 MYLFGNTFGEEWASFLSHYQRPPCRTCSDPDGALSFGLGPRHSGVSWHIHGPGYSE------------------------------EICLEAGTNAMPFICDIGPGEILHFPSMWWHAVLNLEDYNVFVSTF 103
            +Y FG+    EWAS   HY  PP R       A SFG+    SGV +H HGPG+SE                              EI      +A P  C I  GE+L+FP  WWHA LNL D +VF+STF
Sbjct:  160 LYFFGDNNFTEWASLFQHYSPPPFRLLGTTP-AYSFGIAGAGSGVPFHWHGPGFSEVIYGRKRWFLYPPEKTPEFHPNKTTLAWLLEIYPSLALSARPLECTIQAGEVLYFPDRWWHATLNL-DTSVFISTF 289
[Close]
BLAST of NO30G00270 vs. NCBI_GenBank
Match: XP_021041864.1 (jmjC domain-containing protein 8 isoform X2 [Mus caroli])

HSP 1 Score: 88.6 bits (218), Expect = 1.300e-14
Identity = 50/132 (37.88%), Postives = 60/132 (45.45%), Query Frame = 0 
Query:    1 MYLFGNTFGEEWASFLSHYQRPPCRTCSDPDGALSFGLGPRHSGVSWHIHGPGYSE------------------------------EICLEAGTNAMPFICDIGPGEILHFPSMWWHAVLNLEDYNVFVSTF 103
            +Y FG+    EWAS   HY  PP R       A SFG+    SGV +H HGPG+SE                              EI      +A P  C I  GE+L+FP  WWHA LNL D +VF+STF
Sbjct:  107 LYFFGDNNFTEWASLFQHYSPPPFRLLGTTP-AYSFGIAGAGSGVPFHWHGPGFSEVIYGRKRWFLYPPEKTPEFHPNKTTLAWLLEIYPSLALSARPLECTIQAGEVLYFPDRWWHATLNL-DTSVFISTF 236
[Close]
BLAST of NO30G00270 vs. NCBI_GenBank
Match: XP_021041863.1 (jmjC domain-containing protein 8 isoform X1 [Mus caroli])

HSP 1 Score: 88.6 bits (218), Expect = 1.300e-14
Identity = 50/132 (37.88%), Postives = 60/132 (45.45%), Query Frame = 0 
Query:    1 MYLFGNTFGEEWASFLSHYQRPPCRTCSDPDGALSFGLGPRHSGVSWHIHGPGYSE------------------------------EICLEAGTNAMPFICDIGPGEILHFPSMWWHAVLNLEDYNVFVSTF 103
            +Y FG+    EWAS   HY  PP R       A SFG+    SGV +H HGPG+SE                              EI      +A P  C I  GE+L+FP  WWHA LNL D +VF+STF
Sbjct:  197 LYFFGDNNFTEWASLFQHYSPPPFRLLGTTP-AYSFGIAGAGSGVPFHWHGPGFSEVIYGRKRWFLYPPEKTPEFHPNKTTLAWLLEIYPSLALSARPLECTIQAGEVLYFPDRWWHATLNL-DTSVFISTF 326
[Close]
BLAST of NO30G00270 vs. NCBI_GenBank
Match: BAE42811.1 (unnamed protein product [Mus musculus])

HSP 1 Score: 88.6 bits (218), Expect = 1.300e-14
Identity = 50/132 (37.88%), Postives = 60/132 (45.45%), Query Frame = 0 
Query:    1 MYLFGNTFGEEWASFLSHYQRPPCRTCSDPDGALSFGLGPRHSGVSWHIHGPGYSE------------------------------EICLEAGTNAMPFICDIGPGEILHFPSMWWHAVLNLEDYNVFVSTF 103
            +Y FG+    EWAS   HY  PP R       A SFG+    SGV +H HGPG+SE                              EI      +A P  C I  GE+L+FP  WWHA LNL D +VF+STF
Sbjct:  122 LYFFGDNNFTEWASLFQHYSPPPFRLLGTTP-AYSFGIAGAGSGVPFHWHGPGFSEVIYGRKRWFLYPPEKTPEFHPNKTTLAWLLEIYPSLALSARPLECTIQAGEVLYFPDRWWHATLNL-DTSVFISTF 251
The following BLAST results are available for this feature:
BLAST of NO30G00270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
GAX14385.11.400e-2443.18hypothetical protein FisN_11Hh157 [Fistulifera sol... [more]
OEU07897.18.800e-2439.57Clavaminate synthase-like protein [Fragilariopsis ... [more]
EJK62864.16.100e-1732.35hypothetical protein THAOC_16506 [Thalassiosira oc... [more]
BAB27534.11.300e-1437.88unnamed protein product [Mus musculus][more]
AAH10800.11.300e-1437.88Jmjd8 protein [Mus musculus][more]
Q3TA59.21.300e-1437.88RecName: Full=JmjC domain-containing protein 8; Al... [more]
EDL22459.11.300e-1437.88RIKEN cDNA 2610003J06, isoform CRA_c [Mus musculus... [more]
XP_021041864.11.300e-1437.88jmjC domain-containing protein 8 isoform X2 [Mus c... [more]
XP_021041863.11.300e-1437.88jmjC domain-containing protein 8 isoform X1 [Mus c... [more]
BAE42811.11.300e-1437.88unnamed protein product [Mus musculus][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR074ncniR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00270.1NO30G00270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00270.1NO30G00270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00270 ID=NO30G00270|Name=NO30G00270|organism=Nannochloropsis oceanica|type=gene|length=1040bp
ATGTACTTGTTCGGAAATACATTTGGGGAGGAGgtaggatgggaaatacg
gacaaagagagggagggagagggggagggaggcagggagggaaggaggag
gcttgatgtcaccgtctaacgttacatctgatggccttccctgcctccct
ccctgcctccctccctccctccctcctaagTGGGCCTCCTTTTTGTCGCA
CTACCAACGCCCTCCTTGTCGGACTTGCTCCGACCCCGACGGGGCCTTGA
Ggtggttaaaccctccctccctcccctctccctccctctctccctctctc
tctttcctccctccctccttccctccctccctccctcccttcctccctcc
ctccctctctccctctctctctttcctccttccctccctctttccctctc
tctctttcctccctccctccccgtttcctctctctctctcacttcctccc
cgcttcccctcccccctccttcttttcgtcctttcctccctccctccctc
ccttcctctttcaccagCTTCGGCCTCGGTCCTCGTCATTCCGGCGTTTC
CTGGCACATCCACGGCCCGGGCTACAGCGAGgtacggagggagggaggga
gggagggagggagcgagggaaggaagatggagaggagagcgacgaaaaag
acaggactcacaccacacccctccctcacatccctcccatctctcccatc
cctccctccctccgtagGAGATATGCCTGGAGGCAGGAACGAACGCCATG
CCCTTCATCTGCGACATCGGCCCCGGGGAAATACTGgtgagggagcgatg
tatcaaagcaaagctgtcaatatgatcagaggctaggccatggtggtaat
caatctcaccaaaaagtcacatcaaatacggcgtggaatatacaaatcga
atcatttccctcttaccccccacccaccttttcctctctgcctctttccc
cttcctcagCACTTTCCCTCCATGTGGTGGCACGCGGTTCTAAACCTGGA
GGACTACAACGTCTTCGTCTCCACCTTCACCCAGGAGTAG
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protein sequence of NO30G00270.1

>NO30G00270.1-protein ID=NO30G00270.1-protein|Name=NO30G00270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=106bp
MYLFGNTFGEEWASFLSHYQRPPCRTCSDPDGALSFGLGPRHSGVSWHIH
GPGYSEEICLEAGTNAMPFICDIGPGEILHFPSMWWHAVLNLEDYNVFVS
TFTQE*
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Synonyms
Publications