NO30G00250, NO30G00250 (gene) Nannochloropsis oceanica

Overview
NameNO30G00250
Unique NameNO30G00250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2539
Alignment locationchr30:109700..112238 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:109700..112238 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR035965PAS-like_dom_sf
IPR013767PAS_fold
IPR000014PAS
Homology
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BLAST of NO30G00250 vs. NCBI_GenBank
Match: EWM23721.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 89.7 bits (221), Expect = 2.300e-14
Identity = 55/134 (41.04%), Postives = 74/134 (55.22%), Query Frame = 0 
Query:  242 RRARKEDLSGLTAEEKVERRKVRARMYNRLSRYRCSRLHGDLHKDVSRMEMYKNIVEDAPDMICVISPDIQSQVLYINKTARCILHAEPAQLVGSSFWNIVHPEDKMALFRALTAVSAFKSVGKVERLRCRVVT 376
            +RAR+ DLSG T  EK ERRK RARMY+   R R +     L + V  + +YK +V++AP++  V+S D Q++VLY N          P   VG S W +VH EDK  +  A    SA     +V R RCR+ T
Sbjct:  278 KRARRTDLSGYTPGEKQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLCHPESCVGRSVWEVVHREDKETVMGAF--ASAVMEKEEVGRARCRLGT 409
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BLAST of NO30G00250 vs. NCBI_GenBank
Match: EWM23655.1 (pas pac sensor hybrid histidine kinase [Nannochloropsis gaditana])

HSP 1 Score: 76.6 bits (187), Expect = 2.000e-10
Identity = 53/180 (29.44%), Postives = 93/180 (51.67%), Query Frame = 0 
Query:  235 LPSTEKQRRARKEDLSGLTAEEKVERRKVRARMYNRLSRYRCSRLHGDLHKDVSRMEMYKNIVEDAPDMICVISPDIQSQVLYINKTARCILHAEP-----AQLVGSSFWNIVHPEDKMALFRALTAVSAFKSVGKVERLRCRVVTDNLGI----------YVSVRMTLANGMQGIVCVM 400
            L +  K+RRA + D S LT EE+++ +K RAR Y+ ++R R S+    L  +V R+++YK +VE APD + ++S D Q ++L+ NK +  +    P       L G   W  +   D++A+F A+  V   K +  V  + C V   +  +           + V +TL +  QG++ ++
Sbjct:  319 LTTLGKKRRAPRMDFSKLTPEEQIQWKKARARKYSAMARERQSKKEEALRAEVGRLQVYKTLVEAAPDAMLLLSNDAQGRILFANKESEKLFGFIPKGGAEKPLPGRCLWEWLDVTDRVAIFAAIGKVVLCKHL--VRAVPCTVWLPSGSVPKHDARGPQQSLKVLITLRSSAQGLILII 496
The following BLAST results are available for this feature:
BLAST of NO30G00250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23721.12.300e-1441.04conserved unknown protein [Nannochloropsis gaditan... [more]
EWM23655.12.000e-1029.44pas pac sensor hybrid histidine kinase [Nannochlor... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR074ncniR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00250.1NO30G00250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00250.1NO30G00250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00250 ID=NO30G00250|Name=NO30G00250|organism=Nannochloropsis oceanica|type=gene|length=2539bp
ATGACATTCGCTTATACGTGTTCGTATTCTCGAGAGGATATCGGGGCTTT
TGGTCCCACTGCTGAGCAGCGGCGGGACCAAAGCCAGCGCGACTGCCTCC
ACGGAATGAAGGATTCTGTCGACTTGGACGAGAAAAAGGCACATGGCGGC
GCGGCAGCCCTGTTCAGCCTAGCAACACTCTCTGCCGCTGCTGACCCGCT
TCCCGTCTCCACGCCGTGTTACCCCTCGTCTTGGGCCTCTTCTCTCGTAG
CAGCGAACCATGgtacgtttttggaaggcgattggtgcccattattcccc
aacttgcctcctctatgcctcgtatgtacacattctcctgatctgtctgc
tacatacaccatcccccgacttgtacgtggccttgtacatggaagcgtac
gtgtacgacacactccgcatgatgtttctttttcatcttttcatttttca
tcttcccgtcgccattatgtgtttggccaccagcattctgacaaatgctt
ctacgacattgtaagcaaaaagaatatatacacaggtatatcccgccccg
cgtcacacacaagcatctacatgcgcaccaggcatctattcgtagacgtg
cacgctcacttcaacatacatacatacccccccccacacacacagTCTTA
GAACTCCAGAAGCAGGCGGTCGATAAATCATTGCAATCCTTTCTGACCCA
GTACCAGCAACAGTCGGCCATTCACCAGCATGCTATCCTGGATGATAAGA
TGACCAATGTACTCTCCCAGGCCACGCCGTCTTTTCTAGCACAGCAGCAC
CACCAGCTCCAGCAGTATTTCAACCGAAGTCACCTACCACTGCAGCTTCA
TTACTTCCTACAATGCCAAATGCAGCCAACTAAAAAGCAGCATATGATGG
CGTCGACCAAGTGCTTTTCTATGAACGACTTACCGCTCACCACCGAGCAC
GTGGAAGCCAAGATCTATCCACCGATTGCACCGCTGAGCGAGACCCCTCT
GCTGCTGCAGGAGATTCGAGCTGGTGTGATGGGTGTTTCGGTGGGACGAC
TATCGGGCAGATACTCCAAGATCATGGGAAAGTATCTTCCGgtaagagaa
aagagaaatatgagcatggtgtatgcgtcttttgtcaacctttgttggga
actcactctttgtttgtctccattcactcgttctttatctacatcagAGC
ACAGAGAAGCAGCGACGAGCAAGGAAAGAGGACCTGTCGGGATTAACGGC
AGAGGAGAAGGTGGAGCGACGCAAGGTTCGCGCACGCATGTACAATCGCT
TGTCTCGCTACCGGTGCAGCCGGCTGCATGGTGACCTGCACAAGGACGTG
AGTCGCATGGAAATGTACAAGAACATTGTTGAAGATGCGCCGGACATGAT
ATGTGTCATCTCCCCCGACATTCAGAGCCAGGTGCTGTACATCAACAAGA
CCGCTCGATGCATCCTTCACGCTGAGCCCGCGCAGCTGGTGGGGTCCAGC
TTCTGGAATATTGTCCACCCGGAAGATAAGATGGCGCTGTTCAGGGCACT
CACTGCCGTCTCCGCCTTCAAGTCGGTCGGGAAAGTGGAACGGCTACGCT
GTCGTGTTGTCACCGACAACCTCGGTATCTATGTATCTGTCCGGATGACG
CTCGCAAACGGGATGCAGGGCATTGTCTGCGTAATGTGCCACGAAGACCC
TCTGTCTACCGTTTCGCGCGTGTCGCCTGATGGACGAGTGTGTCTTATGT
AGGACGCTCTATTTTTGGGTACCATGATTATCTGACGATGGCTTGTGGAG
TACATAAATTACTATCGCGGTGGACACGGCAGAGGGTGTCCCTTGACTTC
TAAGGCGACATGATGTGGCCTGATCCGTTACTCTCGGGGACAAGGGCATC
CGACCGGAACGAGTGGAGAGGCAATGAAAACGATACATTTCCGCTTTATG
CAGTAGAATCAAATTAGCAGAAAGCTTTCAGAAGATTCTTCTTTCCCTTG
TAGACCGTCTGCTGTGTCTTTCGCGCGACGTTGACGATTATGTAAACCGG
GGAAGGGGAGCCAGGAGGTCCTTTTCACGTGACAAGTGATGAAACATTTT
GAAAATACCGTTACTTTAAGTGGCCGCATTCATACAAGTAGCTATACATT
GGATGAGGAAAAAGGTCACAAGTGCAAATATGGTCGATAAAAAAGAAGGG
AAAATGTTTGATATGAGATGAATTTTGTTGAATTACGGAGATAGGAAGAA
GAAGACGTGGGGAGAGAGAGAGTGTGAGTCTGAGAGATAGATAGAGAGAT
AGCGATAGAAAGATAGAGAGAAAAAGAGAGAGGAAAAAAAGAGGGCCCAA
CTTGCCAGGGAAATAATTTCATACATGCTGGTGCTGGTGAGATCAATGAG
AATGGTCTTCTTTACATACTGAAAATGTACAAATGTTGGTATGGTTAGTG
TGATATATTATCAGAGGCGAGACTGATTTTTTGGGCCCGCCCTGTTGTTA
GGAAGGGACCTTGAGATGAGGGCGAGGCACGACCGAAGG
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protein sequence of NO30G00250.1

>NO30G00250.1-protein ID=NO30G00250.1-protein|Name=NO30G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=421bp
MTFAYTCSYSREDIGAFGPTAEQRRDQSQRDCLHGMKDSVDLDEKKAHGG
AAALFSLATLSAAADPLPVSTPCYPSSWASSLVAANHVLELQKQAVDKSL
QSFLTQYQQQSAIHQHAILDDKMTNVLSQATPSFLAQQHHQLQQYFNRSH
LPLQLHYFLQCQMQPTKKQHMMASTKCFSMNDLPLTTEHVEAKIYPPIAP
LSETPLLLQEIRAGVMGVSVGRLSGRYSKIMGKYLPSTEKQRRARKEDLS
GLTAEEKVERRKVRARMYNRLSRYRCSRLHGDLHKDVSRMEMYKNIVEDA
PDMICVISPDIQSQVLYINKTARCILHAEPAQLVGSSFWNIVHPEDKMAL
FRALTAVSAFKSVGKVERLRCRVVTDNLGIYVSVRMTLANGMQGIVCVMC
HEDPLSTVSRVSPDGRVCLM*
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Synonyms
Publications