NO30G00180, NO30G00180 (gene) Nannochloropsis oceanica

Overview
NameNO30G00180
Unique NameNO30G00180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1094
Alignment locationchr30:80757..81850 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:80757..81850 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO30G00180 vs. NCBI_GenBank
Match: EWM22729.1 (hypothetical protein Naga_100561g2 [Nannochloropsis gaditana] >EWM22730.1 hypothetical protein Naga_100561g2 [Nannochloropsis gaditana])

HSP 1 Score: 92.4 bits (228), Expect = 1.600e-15
Identity = 57/150 (38.00%), Postives = 81/150 (54.00%), Query Frame = 0
Query:   27 IVQTYAKPLVVKKGRIVTVTQSFVV-ENFNGRRLATQDPPIQAGLSTAGNFSDWNFESNFTPQSNANKTKHNKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVLEL 176
            I+Q  A PL  + G+ V VT   VV ++  GR  A +  P    +        +NF+S          T  NKTSK  K   D+G++   +KI PNTWRPK +  I   DEGD  ++ LP DG  L ++YKIT  +R+G+ +PSGT++ L
Sbjct:  188 IIQARAHPLFARAGKTVRVTADLVVLDDQPGRERAVRALPTADIVFACSLDPFFNFQS---------LTAGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEI--VDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPL 326          
BLAST of NO30G00180 vs. NCBI_GenBank
Match: EWM30157.1 (hypothetical protein Naga_100115g3 [Nannochloropsis gaditana])

HSP 1 Score: 90.1 bits (222), Expect = 8.100e-15
Identity = 65/195 (33.33%), Postives = 95/195 (48.72%), Query Frame = 0
Query:    1 MKLTVSSALLAGVALFSTMSAVSADGIVQTYAKPLVVKKGRIVTVTQSFVVENFNGRRLATQDPPIQAGLSTAGNFSDWNFESNFTPQSNANKTKHNKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVLELPFNFNGPDMGFPDILEVLVR 196
            MK    S  LAG+ALFS+ + V A  I Q   KPL V+ G  +T T +FVV +F        DP I  G +T G              +N N+T   K S  D  AN+L   I+ ++I PN WRPK     T+  E     + +P++G  L + YK+  K+RVG+G+   TV ++          F + L+V ++
Sbjct:    4 MKSIGLSLFLAGMALFSSTTFVDAQVIAQAMVKPLAVRPGGRITATLNFVVSSFASN---ATDPAIAVGFATLG-------AQELAALNNKNRTTKGKAS-MDPLANEL--VIRGSRISPNKWRPKLR---TNESEWYSVAWGIPKEGTLLKKVYKVVCKIRVGKGVERNTVRKVSVTLIAGSYIFEESLDVYIK 182          
BLAST of NO30G00180 vs. NCBI_GenBank
Match: XP_005853972.1 (hypothetical protein NGA_0434301 [Nannochloropsis gaditana CCMP526] >EKU22388.1 hypothetical protein NGA_0434301 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 87.4 bits (215), Expect = 5.300e-14
Identity = 62/166 (37.35%), Postives = 87/166 (52.41%), Query Frame = 0
Query:    6 SSALLAGVALFSTMSAVSADGIVQTYAKPLVVKKGRIVTVTQSFVVENFNGRRLATQDPPIQAGLSTAGNFSDWNFESNFTPQSNANKTKHNKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGT 172
            SS L+A   L S  +A    G V    K L VK GR  T+T SF++       +      +  G++          E   +P S+ N T  NKTS   K A D+ VT++  +I PNTWRPK  AN T T     +   +P +GL L+++YK+T K+R+G+GIPSGT
Sbjct:    5 SSLLVAVATLLSNAAAQEYTGSV--CVKSLSVKAGRQATITTSFLIS-----EVPNNVTEVLYGITV---------EPLVSPLSSKNHTAKNKTS---KFAGDVDVTLRKTRISPNTWRPKIFANGTGT---GTSFLPMPLNGLVLSKQYKVTSKIRIGKGIPSGT 148          
BLAST of NO30G00180 vs. NCBI_GenBank
Match: EWM22885.1 (hypothetical protein Naga_100160g3 [Nannochloropsis gaditana])

HSP 1 Score: 86.7 bits (213), Expect = 9.000e-14
Identity = 66/166 (39.76%), Postives = 83/166 (50.00%), Query Frame = 0
Query:    6 SSALLAGVALFSTMSAVSADGIVQTYAKPLVVKKGRIVTVTQSFVVENFNGRRLATQDPPIQAGLSTAGNFSDWNFESNFTPQSNANKTKHNKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGT 172
            SS L+A   L S  +A    G V    K L VK GR  T+T SF++           D   +A       F     E      S  N T  NKTS   K A D+ VT++  +I PNTWRPK  AN T T     +   LP DGL L+++YKIT K+R+G+GIPSGT
Sbjct:   25 SSLLVAVATLLSNAAAQEYTGSV--CVKSLSVKAGRQATITTSFLISEL-------PDTVTEA-------FYGITVEPLVNSLSWKNHTAKNKTS---KFAGDVDVTLRKTRISPNTWRPKTFANGTGT---GTSFLPLPLDGLVLSKQYKITSKIRIGKGIPSGT 168          
BLAST of NO30G00180 vs. NCBI_GenBank
Match: EWM22739.1 (hypothetical protein Naga_100209g9 [Nannochloropsis gaditana])

HSP 1 Score: 85.5 bits (210), Expect = 2.000e-13
Identity = 58/151 (38.41%), Postives = 78/151 (51.66%), Query Frame = 0
Query:   27 IVQTYAKPLVVKKGRIVTVTQSFVVENFNGRRLATQDPPI-QAGLSTAGNFSDWNFESNFTPQSN-ANKTKHNKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVLEL 176
            I+Q  A  L  + G+ V VT   VV           D PI +     A    D  F  +  P  N  + T  NKTSK  K   D+G++   +KI PNTWRPK +  I   DEGD  ++ LP DG  L ++YKIT  +R+G+ +PSGTV+ L
Sbjct:  187 IIQARAHHLFARAGKTVRVTADLVV---------LDDQPIGRKRAVRALETDDIVFACSLDPFFNFQSLTTGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEI--VDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTVIPL 326          
BLAST of NO30G00180 vs. NCBI_GenBank
Match: EWM29458.1 (hypothetical protein Naga_100083g24 [Nannochloropsis gaditana])

HSP 1 Score: 82.4 bits (202), Expect = 1.700e-12
Identity = 60/179 (33.52%), Postives = 84/179 (46.93%), Query Frame = 0
Query:    1 MKLTVSSALLAGVALFSTMSAVSA------DGIVQTYAKPLVVKKGRIVTVTQSFVVENFNGRRLATQDPPIQAGLSTAGNFSDWNFESNFTPQSNANKTKHNKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVL 174
            MK  +SS +LA   + S +   +A      D I  +  KP+ VK G  VT+T SF+      R+L       +       N +D     +    SN NKTK     K+ KH N   V +  ++I PNTWRPK  +NIT    G      +P  GL    +YKI  K R+G+  PSG+V+
Sbjct:    1 MKFAISSLILASAVIISAIGRATAQLFPDFDAIGHSTVKPISVKAGGRVTLTTSFLFLETRRRQLRELAFADEILYWATPNEADIPAYGDLEELSNKNKTK-TSHPKSSKHGNSTDVRLVRSRIMPNTWRPKLRSNIT----GSTNFMSIPTTGLVALEDYKIINKFRIGKRYPSGSVI 174          
BLAST of NO30G00180 vs. NCBI_GenBank
Match: XP_005854180.1 (hypothetical protein NGA_0188501 [Nannochloropsis gaditana CCMP526] >XP_005855596.1 hypothetical protein NGA_0188502 [Nannochloropsis gaditana CCMP526] >EKU20759.1 hypothetical protein NGA_0188502 [Nannochloropsis gaditana CCMP526] >EKU22181.1 hypothetical protein NGA_0188501 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 65.9 bits (159), Expect = 1.600e-7
Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = 0
Query:  101 KADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVL 174
            K+ KH N   V +  ++I PNTWRPK  +NIT    G      +P  GL + ++YKI  K R+G+  PSGTV+
Sbjct:   41 KSSKHGNSTDVRLVRSRIIPNTWRPKLRSNIT----GSTNFMSVPTTGLVVLKDYKIINKFRIGKRYPSGTVI 109          
The following BLAST results are available for this feature:
BLAST of NO30G00180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM22729.11.600e-1538.00hypothetical protein Naga_100561g2 [Nannochloropsi... [more]
EWM30157.18.100e-1533.33hypothetical protein Naga_100115g3 [Nannochloropsi... [more]
XP_005853972.15.300e-1437.35hypothetical protein NGA_0434301 [Nannochloropsis ... [more]
EWM22885.19.000e-1439.76hypothetical protein Naga_100160g3 [Nannochloropsi... [more]
EWM22739.12.000e-1338.41hypothetical protein Naga_100209g9 [Nannochloropsi... [more]
EWM29458.11.700e-1233.52hypothetical protein Naga_100083g24 [Nannochlorops... [more]
XP_005854180.11.600e-742.47hypothetical protein NGA_0188501 [Nannochloropsis ... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR074ncniR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00180.1NO30G00180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00180.1NO30G00180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00180 ID=NO30G00180|Name=NO30G00180|organism=Nannochloropsis oceanica|type=gene|length=1094bp
AGAAACATGAAGTTGACTGTCTCCTCCGCCCTCCTGGCCGGCGTCGCCCT
CTTCTCCACCATGgtaagttttgacacatctacacaagcatccaattcca
attccagtccctgccccataaatcgacgtcgcgttcatgctatacaatac
ctccccccctcctctctttcttgctctatccttcctcccttatcttacag
TCCGCTGTCAGCGCCGACGGCATTGTCCAAACCTACGCCAAGCCCCTGGT
GGTGAAGAAGGGTAGGATCGTGACGGTCACCCAGAGCTTTGTGGTCGAGA
ACTTTAACGGCCGCCGTCTTGCTACTCAGGACCCTCCTATCCAGGCTGGG
gtacgttgaaagaagaaggtagaggaaggagaggaagggagagagggctt
gcccgagcagattcggtgccgggccgcttggcatgctcacagacgactcg
acgcgtttttctttctcatcgtctgaggacgtataggtgaatcttactcc
ttcgtttctttccttcccttcctttccctcccaacactccctgtctccat
ccaccgacctctccacagCTCTCGACTGCCGGGAATTTTTCTGATTGGAA
TTTTGAAAGCAACTTTACACCCCAGTCCAATGCTAACAAAACAAAACACA
ACAAGACGAGCAAGGCGGACAAGCACGCGAATGACCTCGGGGTCACCATC
AAGTCGGCCAAGATCTTCCCCAATACGTGGAGGCCTAAgtgagtgagaca
ggagggacgagagggaagaagggggggtggaagggaggtatattaattgt
aatctctccttgttcagccctacatcgaatcttaattcctcctcccctct
ctttctctcctctatttgactcatccctaacagGGAGTCTGCGAACATTA
CCTCGACCGACGAAGGCGACGTCGCCATCTTCGAGCTCCCACAGGACGGC
CTGACATTGAACAGGGAGTACAAGATCACCTACAAGGTGCGCGTTGGGAG
GGGCATCCCCTCTGGTACCGTCCTCGAGCTTCCGTTTAACTTCAACGGCC
CCGACATGGGTTTCCCGGATATCTTGGAGGTGCTTGTCAGGTAA
back to top

protein sequence of NO30G00180.1

>NO30G00180.1-protein ID=NO30G00180.1-protein|Name=NO30G00180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MKLTVSSALLAGVALFSTMSAVSADGIVQTYAKPLVVKKGRIVTVTQSFV
VENFNGRRLATQDPPIQAGLSTAGNFSDWNFESNFTPQSNANKTKHNKTS
KADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLT
LNREYKITYKVRVGRGIPSGTVLELPFNFNGPDMGFPDILEVLVR*
back to top
Synonyms
Publications