NO30G00160, NO30G00160 (gene) Nannochloropsis oceanica

Overview
NameNO30G00160
Unique NameNO30G00160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1087
Alignment locationchr30:73736..74822 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:73736..74822 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO30G00160 vs. NCBI_GenBank
Match: EWM22729.1 (hypothetical protein Naga_100561g2 [Nannochloropsis gaditana] >EWM22730.1 hypothetical protein Naga_100561g2 [Nannochloropsis gaditana])

HSP 1 Score: 92.0 bits (227), Expect = 2.100e-15
Identity = 57/151 (37.75%), Postives = 80/151 (52.98%), Query Frame = 0
Query:   27 IVQTYAKPLVVKKGRIVTVTQSFVV-ENFNGRRLATQDPPIQAGLSTAGNFSDWNFDSDFTPLSNADKI-KHNKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVLEL 176
            I+Q  A PL  + G+ V VT   VV ++  GR  A +  P           +D  F     P  N   +   NKTSK  K   D+G++   +KI PNTWRPK +  I   DEGD  ++ LP DG  L ++YKIT  +R+G+ +PSGT++ L
Sbjct:  188 IIQARAHPLFARAGKTVRVTADLVVLDDQPGRERAVRALPT----------ADIVFACSLDPFFNFQSLTAGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEI--VDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPL 326          
BLAST of NO30G00160 vs. NCBI_GenBank
Match: EWM30157.1 (hypothetical protein Naga_100115g3 [Nannochloropsis gaditana])

HSP 1 Score: 90.9 bits (224), Expect = 4.800e-15
Identity = 64/195 (32.82%), Postives = 96/195 (49.23%), Query Frame = 0
Query:    1 MKLTVSSALLAGVALFSTMSAVSADGIVQTYAKPLVVKKGRIVTVTQSFVVENFNGRRLATQDPPIQAGLSTAGNFSDWNFDSDFTPLSNADKIKHNKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVLELPFNFNGPDMGFPDILEVLVR 196
            MK    S  LAG+ALFS+ + V A  I Q   KPL V+ G  +T T +FVV +F        DP I  G +T G         +   L+N ++    K S  D  AN+L   I+ ++I PN WRPK     T+  E     + +P++G  L + YK+  K+RVG+G+   TV ++          F + L+V ++
Sbjct:    4 MKSIGLSLFLAGMALFSSTTFVDAQVIAQAMVKPLAVRPGGRITATLNFVVSSFASN---ATDPAIAVGFATLG-------AQELAALNNKNRTTKGKAS-MDPLANEL--VIRGSRISPNKWRPKLR---TNESEWYSVAWGIPKEGTLLKKVYKVVCKIRVGKGVERNTVRKVSVTLIAGSYIFEESLDVYIK 182          
BLAST of NO30G00160 vs. NCBI_GenBank
Match: EWM22739.1 (hypothetical protein Naga_100209g9 [Nannochloropsis gaditana])

HSP 1 Score: 87.0 bits (214), Expect = 6.900e-14
Identity = 57/151 (37.75%), Postives = 76/151 (50.33%), Query Frame = 0
Query:   27 IVQTYAKPLVVKKGRIVTVTQSFVVENFNGRRLATQDPPI-QAGLSTAGNFSDWNFDSDFTPLSNADKI-KHNKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVLEL 176
            I+Q  A  L  + G+ V VT   VV           D PI +     A    D  F     P  N   +   NKTSK  K   D+G++   +KI PNTWRPK +  I   DEGD  ++ LP DG  L ++YKIT  +R+G+ +PSGTV+ L
Sbjct:  187 IIQARAHHLFARAGKTVRVTADLVV---------LDDQPIGRKRAVRALETDDIVFACSLDPFFNFQSLTTGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEI--VDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTVIPL 326          
BLAST of NO30G00160 vs. NCBI_GenBank
Match: EWM22885.1 (hypothetical protein Naga_100160g3 [Nannochloropsis gaditana])

HSP 1 Score: 86.3 bits (212), Expect = 1.200e-13
Identity = 61/167 (36.53%), Postives = 82/167 (49.10%), Query Frame = 0
Query:    6 SSALLAGVALFSTMSAVSADGIVQTYAKPLVVKKGRIVTVTQSFVVENFNGRRLATQDPPIQAGLSTAGNFSDWNFDSDFTPLSNADKIK-HNKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGT 172
            SS L+A   L S  +A    G V    K L VK GR  T+T SF++                         ++  +     PL N+   K H   +K  K A D+ VT++  +I PNTWRPK  AN T T     +   LP DGL L+++YKIT K+R+G+GIPSGT
Sbjct:   25 SSLLVAVATLLSNAAAQEYTGSV--CVKSLSVKAGRQATITTSFLISEL------------------PDTVTEAFYGITVEPLVNSLSWKNHTAKNKTSKFAGDVDVTLRKTRISPNTWRPKTFANGTGT---GTSFLPLPLDGLVLSKQYKITSKIRIGKGIPSGT 168          
BLAST of NO30G00160 vs. NCBI_GenBank
Match: XP_005853972.1 (hypothetical protein NGA_0434301 [Nannochloropsis gaditana CCMP526] >EKU22388.1 hypothetical protein NGA_0434301 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 85.9 bits (211), Expect = 1.500e-13
Identity = 60/166 (36.14%), Postives = 87/166 (52.41%), Query Frame = 0
Query:    6 SSALLAGVALFSTMSAVSADGIVQTYAKPLVVKKGRIVTVTQSFVVENFNGRRLATQDPPIQAGLSTAGNFSDWNFDSDFTPLSNADKIKHNKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGT 172
            SS L+A   L S  +A    G V    K L VK GR  T+T SF++       +      +  G++          +   +PLS+ +    NKTS   K A D+ VT++  +I PNTWRPK  AN T T     +   +P +GL L+++YK+T K+R+G+GIPSGT
Sbjct:    5 SSLLVAVATLLSNAAAQEYTGSV--CVKSLSVKAGRQATITTSFLIS-----EVPNNVTEVLYGITV---------EPLVSPLSSKNHTAKNKTS---KFAGDVDVTLRKTRISPNTWRPKIFANGTGT---GTSFLPMPLNGLVLSKQYKVTSKIRIGKGIPSGT 148          
BLAST of NO30G00160 vs. NCBI_GenBank
Match: EWM29458.1 (hypothetical protein Naga_100083g24 [Nannochloropsis gaditana])

HSP 1 Score: 84.3 bits (207), Expect = 4.500e-13
Identity = 60/179 (33.52%), Postives = 84/179 (46.93%), Query Frame = 0
Query:    1 MKLTVSSALLAGVALFSTMSAVSA------DGIVQTYAKPLVVKKGRIVTVTQSFVVENFNGRRLATQDPPIQAGLSTAGNFSDWNFDSDFTPLSNADKIKHNKTSKADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVL 174
            MK  +SS +LA   + S +   +A      D I  +  KP+ VK G  VT+T SF+      R+L       +       N +D     D   LSN +K K     K+ KH N   V +  ++I PNTWRPK  +NIT    G      +P  GL    +YKI  K R+G+  PSG+V+
Sbjct:    1 MKFAISSLILASAVIISAIGRATAQLFPDFDAIGHSTVKPISVKAGGRVTLTTSFLFLETRRRQLRELAFADEILYWATPNEADIPAYGDLEELSNKNKTK-TSHPKSSKHGNSTDVRLVRSRIMPNTWRPKLRSNIT----GSTNFMSIPTTGLVALEDYKIINKFRIGKRYPSGSVI 174          
BLAST of NO30G00160 vs. NCBI_GenBank
Match: XP_005854180.1 (hypothetical protein NGA_0188501 [Nannochloropsis gaditana CCMP526] >XP_005855596.1 hypothetical protein NGA_0188502 [Nannochloropsis gaditana CCMP526] >EKU20759.1 hypothetical protein NGA_0188502 [Nannochloropsis gaditana CCMP526] >EKU22181.1 hypothetical protein NGA_0188501 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 66.2 bits (160), Expect = 1.300e-7
Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = 0
Query:  101 KADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLTLNREYKITYKVRVGRGIPSGTVL 174
            K+ KH N   V +  ++I PNTWRPK  +NIT    G      +P  GL + ++YKI  K R+G+  PSGTV+
Sbjct:   41 KSSKHGNSTDVRLVRSRIIPNTWRPKLRSNIT----GSTNFMSVPTTGLVVLKDYKIINKFRIGKRYPSGTVI 109          
The following BLAST results are available for this feature:
BLAST of NO30G00160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM22729.12.100e-1537.75hypothetical protein Naga_100561g2 [Nannochloropsi... [more]
EWM30157.14.800e-1532.82hypothetical protein Naga_100115g3 [Nannochloropsi... [more]
EWM22739.16.900e-1437.75hypothetical protein Naga_100209g9 [Nannochloropsi... [more]
EWM22885.11.200e-1336.53hypothetical protein Naga_100160g3 [Nannochloropsi... [more]
XP_005853972.11.500e-1336.14hypothetical protein NGA_0434301 [Nannochloropsis ... [more]
EWM29458.14.500e-1333.52hypothetical protein Naga_100083g24 [Nannochlorops... [more]
XP_005854180.11.300e-742.47hypothetical protein NGA_0188501 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR074ncniR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00160.1NO30G00160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00160.1NO30G00160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00160 ID=NO30G00160|Name=NO30G00160|organism=Nannochloropsis oceanica|type=gene|length=1087bp
ATGAAGTTGACTGTCTCCTCCGCCCTCCTGGCCGGCGTCGCCCTCTTCTC
CACCATGgtaagttttgacacatctacacaagcatccaattccaattcca
gtccctgccccataaatcgacgtcgcgttcatgctatacaatacctcccc
ccctcctctctttcttgctctatccttcctcccttatcttacagTCCGCT
GTCAGCGCCGACGGCATTGTCCAAACCTACGCCAAGCCCCTGGTGGTGAA
GAAGGGTAGGATCGTGACGGTCACCCAGAGCTTTGTGGTCGAGAACTTTA
ACGGCCGCCGTCTTGCTACTCAGGACCCTCCTATCCAGGCTGGGgtacgt
tgaaagaagaaggtagaggaaggagaggaagggagagagggcttgcccga
gcagattcggtgccgggccggttggcatgctcacaaacgactcgacgcgt
ttttctttctcgtcgcccttacaaatataggtgaatctcactccttcttt
ctttccttcccttcctttccctcccaacactccctgtctccatccaccaa
cctctccaaagCTCTCGACTGCCGGGAATTTTTCTGATTGGAACTTCGAC
AGCGACTTTACACCCCTCTCCAATGCTGACAAAATAAAACACAACAAGAC
GAGCAAGGCGGACAAGCACGCGAATGACCTCGGGGTCACCATCAAGTCGG
CCAAGATCTTCCCCAATACGTGGAGGCCTAAgtgagtaagacaggcggga
ggagagggaagaaggagggggggaagggaggtatattaattggaatctct
ccttgttcagccctacatcgaatcttaattcctcctcccctctctttctc
tcctctatttgactcgtccctaacagGGAGTCTGCGAACATTACCTCGAC
CGACGAAGGCGACGTCGCCATCTTCGAGCTCCCACAGGACGGCCTGACAT
TGAACAGGGAGTACAAGATCACCTACAAGGTGCGCGTTGGGAGGGGCATC
CCCTCTGGTACCGTCCTCGAGCTTCCGTTTAACTTCAACGGCCCCGACAT
GGGTTTCCCAGATATCTTGGAGGTGCTTGTCAGGTAA
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protein sequence of NO30G00160.1

>NO30G00160.1-protein ID=NO30G00160.1-protein|Name=NO30G00160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MKLTVSSALLAGVALFSTMSAVSADGIVQTYAKPLVVKKGRIVTVTQSFV
VENFNGRRLATQDPPIQAGLSTAGNFSDWNFDSDFTPLSNADKIKHNKTS
KADKHANDLGVTIKSAKIFPNTWRPKESANITSTDEGDVAIFELPQDGLT
LNREYKITYKVRVGRGIPSGTVLELPFNFNGPDMGFPDILEVLVR*
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Synonyms
Publications