NO29G01720, NO29G01720 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO29G01720 vs. NCBI_GenBank
Match: CBJ27035.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 242.3 bits (617), Expect = 1.800e-60 Identity = 149/215 (69.30%), Postives = 179/215 (83.26%), Query Frame = 0
Query: 62 IVLRGGSEQFIEESHRSIHDALMIVKRCIQSKGIVAGGGAVEMEVSTRLRETAKGTEGKSQLIMTAFAKALEVIPRQLAENAGFDSTDILALLRLKH-NGTAEGKWIGVDVDTEGVVDTFATGVWEPTVNKVNALSAATEAACVILAIDETVRNPRSQQPGEADRNGVGLGRGGGPVSAXXXXXXXXXXXXXXXXXXXXXXXXXXVKAFKGRGGA 276
IVLRGGSEQF+EESHRSIHD+LMIVKRC++++ +VAGGGA+EME+S LR+ +K +GK QLIM+++AKALE+IPRQLA+NAGFD+TD+L LR KH G GKW GVDVDTEGV DTF +GVWEPT+NK N+L +ATEAAC+IL+IDETV+NP+S++ G A GVGLGR GGP+S XXXXXXXXXXXXXXXXXXX VK KGRGGA
Sbjct: 373 IVLRGGSEQFMEESHRSIHDSLMIVKRCLKNREVVAGGGAIEMELSKALRDHSKTIKGKQQLIMSSYAKALEIIPRQLADNAGFDATDLLNRLRQKHARGGDAGKWFGVDVDTEGVCDTFESGVWEPTINKRNSLRSATEAACLILSIDETVKNPQSEKQG-APSQGVGLGR-GGPIS-----XXXXXXXXXXXXXXXXXXXRPGVKMMKGRGGA 580
BLAST of NO29G01720 vs. NCBI_GenBank
Match: XP_008867840.1 (T-complex protein 1, eta subunit [Aphanomyces invadans] >ETW03611.1 T-complex protein 1, eta subunit [Aphanomyces invadans]) HSP 1 Score: 226.1 bits (575), Expect = 1.300e-55 Identity = 127/215 (59.07%), Postives = 163/215 (75.81%), Query Frame = 0
Query: 62 IVLRGGSEQFIEESHRSIHDALMIVKRCIQSKGIVAGGGAVEMEVSTRLRETAKGTEGKSQLIMTAFAKALEVIPRQLAENAGFDSTDILALLRLKHNGTAE-GKWIGVDVDTEGVVDTFATGVWEPTVNKVNALSAATEAACVILAIDETVRNPRSQQPGEADRNGVGLGRGGGPVSAXXXXXXXXXXXXXXXXXXXXXXXXXXVKAFKGRGGA 276
IVLRGG+EQFIEE+HRS+HDALM+VKR + + +VAGGGA+EME+S LRE ++ EGK+QL++ AFAKA E+IPRQL++NAG DSTDIL LR KH E GKW GVD+++ G+ DTF + VWEP NK+N+++AATEAAC+IL++DETVRNP+S+QP + GVG G GG P+SA XXXXXXXXX V+AF+G+GGA
Sbjct: 372 IVLRGGAEQFIEEAHRSVHDALMVVKRTVATSTVVAGGGAIEMELSRHLREYSRTVEGKAQLLINAFAKAFEIIPRQLSDNAGHDSTDILNRLRQKHFKDPETGKWFGVDINSGGICDTFESHVWEPAANKINSVAAATEAACLILSVDETVRNPKSEQP----QAGVGGGPGGAPLSA----AMGGQGMKGXXXXXXXXXLGKGVRAFRGKGGA 578
BLAST of NO29G01720 vs. NCBI_GenBank
Match: OQS00016.1 (T-complex protein 1 subunit eta, partial [Thraustotheca clavata]) HSP 1 Score: 223.4 bits (568), Expect = 8.700e-55 Identity = 111/179 (62.01%), Postives = 142/179 (79.33%), Query Frame = 0
Query: 62 IVLRGGSEQFIEESHRSIHDALMIVKRCIQSKGIVAGGGAVEMEVSTRLRETAKGTEGKSQLIMTAFAKALEVIPRQLAENAGFDSTDILALLRLKHNGTAE-GKWIGVDVDTEGVVDTFATGVWEPTVNKVNALSAATEAACVILAIDETVRNPRSQQPGEADRNGVGLGRGGGPVSA 240
+VLRGG+EQFIEE+HRS+HDALM+VKR + + +VAGGGA+EME+S LRE A+ EGK+QL++ AFAKA E+IPRQL++NAG DSTDIL LR KH E GKW GVD++T G+ DTFA+ VWEP NK+N+++AATEAAC+IL++DETVRNP+S+QP A G GG P+SA
Sbjct: 369 LVLRGGAEQFIEEAHRSVHDALMVVKRTVSTSTVVAGGGAIEMEMSRHLREYARTVEGKAQLLINAFAKAFEIIPRQLSDNAGHDSTDILNRLRQKHFKEPEAGKWFGVDINTGGICDTFASHVWEPAANKINSVAAATEAACLILSVDETVRNPKSEQPQAAPG-----GPGGAPMSA 542
BLAST of NO29G01720 vs. NCBI_GenBank
Match: GAY02391.1 (Hypothetical protein PINS_010237 [Pythium insidiosum]) HSP 1 Score: 221.9 bits (564), Expect = 2.500e-54 Identity = 105/161 (65.22%), Postives = 134/161 (83.23%), Query Frame = 0
Query: 62 IVLRGGSEQFIEESHRSIHDALMIVKRCIQSKGIVAGGGAVEMEVSTRLRETAKGTEGKSQLIMTAFAKALEVIPRQLAENAGFDSTDILALLRLKH-NGTAEGKWIGVDVDTEGVVDTFATGVWEPTVNKVNALSAATEAACVILAIDETVRNPRSQQPG 222
IVLRGG++QFIEE+HRS+HDALM+VKR + S +VAGGGA+EMEVS LR+ A+ EGKSQL++ A+AKA EVIPRQ+A+NAG DSTDIL LR KH EGKW GVD++T G+ DT+ + VWEP NK+N+++AATEAAC+IL++DETVRNP+S+QPG
Sbjct: 1400 IVLRGGADQFIEEAHRSVHDALMVVKRAVASSTVVAGGGAIEMEVSRHLRQYARTIEGKSQLLVNAYAKAFEVIPRQIADNAGHDSTDILNRLRQKHFKDPEEGKWFGVDINTGGICDTYESHVWEPAANKINSIAAATEAACLILSVDETVRNPKSEQPG 1560
BLAST of NO29G01720 vs. NCBI_GenBank
Match: XP_008605395.1 (T-complex protein 1 subunit eta [Saprolegnia diclina VS20] >EQC41681.1 T-complex protein 1 subunit eta [Saprolegnia diclina VS20]) HSP 1 Score: 221.1 bits (562), Expect = 4.300e-54 Identity = 105/160 (65.62%), Postives = 134/160 (83.75%), Query Frame = 0
Query: 62 IVLRGGSEQFIEESHRSIHDALMIVKRCIQSKGIVAGGGAVEMEVSTRLRETAKGTEGKSQLIMTAFAKALEVIPRQLAENAGFDSTDILALLRLKHNGTAE-GKWIGVDVDTEGVVDTFATGVWEPTVNKVNALSAATEAACVILAIDETVRNPRSQQP 221
+VLRGG+EQFIEE+HRS+HDALM+VKR + S +VAGGGA+EME+S LRE A+ EGK+QL++ AFAKA E+IPRQLA+NAG DSTDIL LR KH E GKW GVD++T G+ DT+A+ VWEP NK+N+++AATEAAC+IL++DETVRNP+S+QP
Sbjct: 372 VVLRGGAEQFIEEAHRSVHDALMVVKRTVSSSTVVAGGGAIEMEMSRHLREYARTVEGKAQLLINAFAKAFEIIPRQLADNAGHDSTDILNRLRQKHFKEPETGKWFGVDINTGGICDTYASHVWEPAANKINSVAAATEAACLILSVDETVRNPKSEQP 531
BLAST of NO29G01720 vs. NCBI_GenBank
Match: XP_012194274.1 (T-complex protein 1 [Saprolegnia parasitica CBS 223.65] >KDO34597.1 T-complex protein 1 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 220.7 bits (561), Expect = 5.600e-54 Identity = 105/160 (65.62%), Postives = 134/160 (83.75%), Query Frame = 0
Query: 62 IVLRGGSEQFIEESHRSIHDALMIVKRCIQSKGIVAGGGAVEMEVSTRLRETAKGTEGKSQLIMTAFAKALEVIPRQLAENAGFDSTDILALLRLKHNGTAE-GKWIGVDVDTEGVVDTFATGVWEPTVNKVNALSAATEAACVILAIDETVRNPRSQQP 221
+VLRGG+EQFIEE+HRS+HDALM+VKR + S +VAGGGA+EME+S LRE A+ EGK+QL++ AFAKA E+IPRQLA+NAG DSTDIL LR KH E GKW GVD++T G+ DT+A+ VWEP NK+N+++AATEAAC+IL++DETVRNP+S+QP
Sbjct: 372 LVLRGGAEQFIEEAHRSVHDALMVVKRTVSSSTVVAGGGAIEMEMSRHLREYARTVEGKAQLLINAFAKAFEIIPRQLADNAGHDSTDILNRLRQKHFKEPETGKWFGVDINTGGICDTYASHVWEPAANKINSVAAATEAACLILSVDETVRNPKSEQP 531
BLAST of NO29G01720 vs. NCBI_GenBank
Match: OWZ14301.1 (T-complex protein 1, eta subunit [Phytophthora megakarya]) HSP 1 Score: 219.9 bits (559), Expect = 9.600e-54 Identity = 109/179 (60.89%), Postives = 139/179 (77.65%), Query Frame = 0
Query: 62 IVLRGGSEQFIEESHRSIHDALMIVKRCIQSKGIVAGGGAVEMEVSTRLRETAKGTEGKSQLIMTAFAKALEVIPRQLAENAGFDSTDILALLRLKH-NGTAEGKWIGVDVDTEGVVDTFATGVWEPTVNKVNALSAATEAACVILAIDETVRNPRSQQPGEADRNGVGLGRGGGPVSA 240
IVLRGG+EQFIEE+HRS+HDALM+VKR + S +VAGGGA+EMEVS LR+ A+ EGK+QL++ A+AKA E+IPRQ+AENAG D+TDIL LR KH EGKW GVD+ T G+ DT+ + VWEP NK+N+++AATEAAC+IL++DETVRNP+S+QP G GG P+SA
Sbjct: 375 IVLRGGAEQFIEEAHRSVHDALMVVKRAVASSTVVAGGGAIEMEVSRHLRQYARTIEGKAQLLVNAYAKAFEIIPRQIAENAGHDATDILNRLRQKHFKDPEEGKWFGVDITTGGICDTYESHVWEPAANKINSIAAATEAACLILSVDETVRNPKSEQP------QAGGPAGGAPMSA 547
BLAST of NO29G01720 vs. NCBI_GenBank
Match: OQR92218.1 (T-complex protein 1 subunit eta [Achlya hypogyna]) HSP 1 Score: 218.8 bits (556), Expect = 2.100e-53 Identity = 123/215 (57.21%), Postives = 156/215 (72.56%), Query Frame = 0
Query: 62 IVLRGGSEQFIEESHRSIHDALMIVKRCIQSKGIVAGGGAVEMEVSTRLRETAKGTEGKSQLIMTAFAKALEVIPRQLAENAGFDSTDILALLRLKHNGTAE-GKWIGVDVDTEGVVDTFATGVWEPTVNKVNALSAATEAACVILAIDETVRNPRSQQPGEADRNGVGLGRGGGPVSAXXXXXXXXXXXXXXXXXXXXXXXXXXVKAFKGRGGA 276
+VLRGG+EQFIEE+HRS+HDALM+VKR + S +VAGGGA+EME+S LRE A+ +GK+QL++ AFAKA EVIPRQ+A+NAG DSTDIL LR KH E GKW GVD++T G+ DT+A+ VWEP NK+N+++AATEAAC+IL++DETVRNP+S+QP + G G P+SA XXXXX V+AFKGRGGA
Sbjct: 372 LVLRGGAEQFIEEAHRSVHDALMVVKRTVSSSTVVAGGGAIEMEMSRHLREYARTVDGKAQLLINAFAKAFEVIPRQIADNAGHDSTDILNRLRQKHFKEPETGKWFGVDINTGGICDTYASHVWEPAANKINSVAAATEAACLILSVDETVRNPKSEQP----QAGPG-XXXXAPMSA-----AMGGQXXXXXGMNARGGLGKGVRAFKGRGGA 576
BLAST of NO29G01720 vs. NCBI_GenBank
Match: XP_008891618.1 (T-complex protein 1, eta subunit [Phytophthora parasitica INRA-310] >ETI50212.1 T-complex protein 1, eta subunit [Phytophthora parasitica P1569] >ETK90102.1 T-complex protein 1, eta subunit [Phytophthora parasitica] >ETL43500.1 T-complex protein 1, eta subunit [Phytophthora parasitica] >ETM49830.1 T-complex protein 1, eta subunit [Phytophthora parasitica] >ETN22347.1 T-complex protein 1, eta subunit [Phytophthora parasitica INRA-310] >ETO78945.1 T-complex protein 1, eta subunit [Phytophthora parasitica P1976] >ETP19976.1 T-complex protein 1, eta subunit [Phytophthora parasitica CJ01A1] >ETP47955.1 T-complex protein 1, eta subunit [Phytophthora parasitica P10297] >KUF84228.1 T-complex protein 1 subunit eta [Phytophthora nicotianae]) HSP 1 Score: 218.0 bits (554), Expect = 3.600e-53 Identity = 107/179 (59.78%), Postives = 139/179 (77.65%), Query Frame = 0
Query: 62 IVLRGGSEQFIEESHRSIHDALMIVKRCIQSKGIVAGGGAVEMEVSTRLRETAKGTEGKSQLIMTAFAKALEVIPRQLAENAGFDSTDILALLRLKH-NGTAEGKWIGVDVDTEGVVDTFATGVWEPTVNKVNALSAATEAACVILAIDETVRNPRSQQPGEADRNGVGLGRGGGPVSA 240
IVLRGG+EQFIEE+HRS+HDALM+VKR + S +VAGGGA+EME+S LR+ A+ EGK+QL++ A+AKA E+IPRQ+AENAG D+TDIL LR KH +GKW GVD+ T G+ DT+ + VWEP NK+N+++AATEAAC+IL++DETVRNP+S+QP G GG P+SA
Sbjct: 374 IVLRGGAEQFIEEAHRSVHDALMVVKRAVASSTVVAGGGAIEMEISRHLRQYARTIEGKAQLLVNAYAKAFEIIPRQIAENAGHDATDILNHLRQKHFKDPEDGKWFGVDITTGGICDTYESHVWEPAANKINSIAAATEAACLILSVDETVRNPKSEQP------QAGGPAGGAPMSA 546
BLAST of NO29G01720 vs. NCBI_GenBank
Match: XP_008891619.1 (T-complex protein 1, eta subunit, variant [Phytophthora parasitica INRA-310] >ETI50213.1 T-complex protein 1, eta subunit, variant [Phytophthora parasitica P1569] >ETK90103.1 T-complex protein 1, eta subunit, variant [Phytophthora parasitica] >ETL43501.1 T-complex protein 1, eta subunit, variant [Phytophthora parasitica] >ETL96681.1 T-complex protein 1, eta subunit, variant [Phytophthora parasitica] >ETM49831.1 T-complex protein 1, eta subunit, variant [Phytophthora parasitica] >ETN22348.1 T-complex protein 1, eta subunit, variant [Phytophthora parasitica INRA-310] >ETO78946.1 T-complex protein 1, eta subunit, variant [Phytophthora parasitica P1976] >ETP19977.1 T-complex protein 1, eta subunit, variant [Phytophthora parasitica CJ01A1] >ETP47956.1 T-complex protein 1, eta subunit, variant [Phytophthora parasitica P10297]) HSP 1 Score: 218.0 bits (554), Expect = 3.600e-53 Identity = 107/179 (59.78%), Postives = 139/179 (77.65%), Query Frame = 0
Query: 62 IVLRGGSEQFIEESHRSIHDALMIVKRCIQSKGIVAGGGAVEMEVSTRLRETAKGTEGKSQLIMTAFAKALEVIPRQLAENAGFDSTDILALLRLKH-NGTAEGKWIGVDVDTEGVVDTFATGVWEPTVNKVNALSAATEAACVILAIDETVRNPRSQQPGEADRNGVGLGRGGGPVSA 240
IVLRGG+EQFIEE+HRS+HDALM+VKR + S +VAGGGA+EME+S LR+ A+ EGK+QL++ A+AKA E+IPRQ+AENAG D+TDIL LR KH +GKW GVD+ T G+ DT+ + VWEP NK+N+++AATEAAC+IL++DETVRNP+S+QP G GG P+SA
Sbjct: 339 IVLRGGAEQFIEEAHRSVHDALMVVKRAVASSTVVAGGGAIEMEISRHLRQYARTIEGKAQLLVNAYAKAFEIIPRQIAENAGHDATDILNHLRQKHFKDPEDGKWFGVDITTGGICDTYESHVWEPAANKINSIAAATEAACLILSVDETVRNPKSEQP------QAGGPAGGAPMSA 511 The following BLAST results are available for this feature:
BLAST of NO29G01720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO29G01720 ID=NO29G01720|Name=NO29G01720|organism=Nannochloropsis oceanica|type=gene|length=2360bpback to top protein sequence of NO29G01720.1 >NO29G01720.1-protein ID=NO29G01720.1-protein|Name=NO29G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bpback to top Synonyms
Publications
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