NO29G01700, NO29G01700 (gene) Nannochloropsis oceanica

Overview
NameNO29G01700
Unique NameNO29G01700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2781
Alignment locationchr29:536631..539411 +

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Properties
Property NameValue
DescriptionPotassium channel protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:536631..539411 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR0130992pore_dom_K_chnl_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Homology
[Close]
BLAST of NO29G01700 vs. NCBI_GenBank
Match: EWM20296.1 (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana])

HSP 1 Score: 166.4 bits (420), Expect = 2.300e-37
Identity = 82/104 (78.85%), Postives = 94/104 (90.38%), Query Frame = 0 
Query:  218 RFSVLSLSIACLVSYLLVSIGVYGYWLEDWGAVRALYFGIVTLTSVGFGDHVPHNQMARLFTVFFAIVGISIVALAVGEISGYVIERQAAKVEEFNKLLAQKLA 322
            RFS+L LSI CLVSYLLVSIGVYGYWLE WGA RA+YFG+VTLTSVGFGD  P  Q +RLFT+FFAIVGIS+VALAVGEISG++IE++ AKVEEFN+LLAQKL+
Sbjct:    3 RFSILYLSIICLVSYLLVSIGVYGYWLERWGASRAIYFGVVTLTSVGFGDMTPLTQESRLFTIFFAIVGISVVALAVGEISGFIIEKETAKVEEFNRLLAQKLS 106
[Close]
BLAST of NO29G01700 vs. NCBI_GenBank
Match: EWM20297.1 (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana])

HSP 1 Score: 166.4 bits (420), Expect = 2.300e-37
Identity = 82/104 (78.85%), Postives = 94/104 (90.38%), Query Frame = 0 
Query:  218 RFSVLSLSIACLVSYLLVSIGVYGYWLEDWGAVRALYFGIVTLTSVGFGDHVPHNQMARLFTVFFAIVGISIVALAVGEISGYVIERQAAKVEEFNKLLAQKLA 322
            RFS+L LSI CLVSYLLVSIGVYGYWLE WGA RA+YFG+VTLTSVGFGD  P  Q +RLFT+FFAIVGIS+VALAVGEISG++IE++ AKVEEFN+LLAQKL+
Sbjct:    3 RFSILYLSIICLVSYLLVSIGVYGYWLERWGASRAIYFGVVTLTSVGFGDMTPLTQESRLFTIFFAIVGISVVALAVGEISGFIIEKETAKVEEFNRLLAQKLS 106
[Close]
BLAST of NO29G01700 vs. NCBI_GenBank
Match: XP_005854955.1 (potassium channel protein, partial [Nannochloropsis gaditana CCMP526] >EKU21407.1 potassium channel protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 153.7 bits (387), Expect = 1.600e-33
Identity = 75/96 (78.12%), Postives = 86/96 (89.58%), Query Frame = 0 
Query:  226 IACLVSYLLVSIGVYGYWLEDWGAVRALYFGIVTLTSVGFGDHVPHNQMARLFTVFFAIVGISIVALAVGEISGYVIERQAAKVEEFNKLLAQKLA 322
            I CLVSYLLVSIGVYGYWLE WGA RA+YF +VTLTSVGFGD  P  Q +RLFT+FFAIVGIS+VALAVGEISG++IE++ AKVEEFN+LLAQKL+
Sbjct:    2 IICLVSYLLVSIGVYGYWLERWGASRAIYFAVVTLTSVGFGDMTPLTQESRLFTIFFAIVGISVVALAVGEISGFIIEKETAKVEEFNRLLAQKLS 97
[Close]
BLAST of NO29G01700 vs. NCBI_GenBank
Match: XP_009529999.1 (hypothetical protein PHYSODRAFT_334425 [Phytophthora sojae] >EGZ16250.1 hypothetical protein PHYSODRAFT_334425 [Phytophthora sojae])

HSP 1 Score: 74.7 bits (182), Expect = 9.200e-10
Identity = 42/128 (32.81%), Postives = 75/128 (58.59%), Query Frame = 0 
Query:  193 REVNFIARSTSSVIAETYEEKGRKKRFSVLSLSIACLVSYLLVSIGVYGYWLEDWGAVRALYFGIVTLTSVGFGDHVPHNQMARLFTVFFAIVGISIVALAVGEISGYVIERQAAKVEEFNKLLAQKL 321
            R +  +A+ T    AE  +      R ++++L +  ++SY+ VSI V+ +++EDW  V  +Y+ +V +T+VG+GD VP     R FT+FFA  GI  + +A+G+++ + ++RQ        K+  QKL
Sbjct:  746 RTITNVAQQTIIAGAENAKNNHETLRSNLVALGL--VLSYIAVSIVVF-HFVEDWTVVDCVYYAMVIVTTVGYGDVVPKTTAGRAFTIFFAFYGICTIGVALGQLASWFLQRQ----RHVTKMATQKL 866
[Close]
BLAST of NO29G01700 vs. NCBI_GenBank
Match: XP_002998320.1 (Voltage-gated Ion Channel (VIC) Superfamily [Phytophthora infestans T30-4] >EEY70666.1 Voltage-gated Ion Channel (VIC) Superfamily [Phytophthora infestans T30-4])

HSP 1 Score: 71.2 bits (173), Expect = 1.000e-8
Identity = 40/128 (31.25%), Postives = 75/128 (58.59%), Query Frame = 0 
Query:  193 REVNFIARSTSSVIAETYEEKGRKKRFSVLSLSIACLVSYLLVSIGVYGYWLEDWGAVRALYFGIVTLTSVGFGDHVPHNQMARLFTVFFAIVGISIVALAVGEISGYVIERQAAKVEEFNKLLAQKL 321
            R +  +A+ T    AE+        R ++++L++  ++SY++VSI V+ Y  E W  V  +Y+ +V +T+VG+GD VP     +  T+FF+  GI  +A+A+G+++ + ++RQ    +   K+  QKL
Sbjct:    7 RTITSVAQQTIVAGAESARRGNENLRSNLVALTL--VLSYVVVSILVFHY-TEKWSVVDCVYYAMVIVTTVGYGDVVPITNAGKAITIFFSFYGICTIAVALGQLASWFLQRQ----KHVTKMATQKL 127
[Close]
BLAST of NO29G01700 vs. NCBI_GenBank
Match: GAX28462.1 (potassium channel subfamily K, other eukaryote [Fistulifera solaris])

HSP 1 Score: 70.1 bits (170), Expect = 2.300e-8
Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = 0 
Query:  228 CLVSYLLVSIGVYGYWLEDWGAVRALYFGIVTLTSVGFGDHVPHNQMARLFTVFFAIVGISIVALAVGEISGYVIERQAAKVEEFNKLLAQKLA 322
            C+++YL   I  Y   LE W  V ALYF  VT ++VG+GD  P    ++LFT  F + GI+ +  A+  I G VI+ +   V+E  +   ++LA
Sbjct:  107 CVLAYLATGILAYSVVLEKWSVVDALYFSCVTFSTVGYGDLCPSTPQSKLFTCVFGLCGIAFLGAAIATIGGRVIQAEVEAVQEARQRSKKRLA 200
[Close]
BLAST of NO29G01700 vs. NCBI_GenBank
Match: XP_008910304.1 (hypothetical protein PPTG_15051 [Phytophthora parasitica INRA-310] >ETI39848.1 hypothetical protein F443_14613 [Phytophthora parasitica P1569] >ETL33370.1 hypothetical protein L916_14150 [Phytophthora parasitica] >ETL86681.1 hypothetical protein L917_13933 [Phytophthora parasitica] >ETM39853.1 hypothetical protein L914_14058 [Phytophthora parasitica] >ETN04377.1 hypothetical protein PPTG_15051 [Phytophthora parasitica INRA-310] >ETO68574.1 hypothetical protein F444_14626 [Phytophthora parasitica P1976] >ETP09693.1 hypothetical protein F441_14483 [Phytophthora parasitica CJ01A1] >ETP37864.1 hypothetical protein F442_14440 [Phytophthora parasitica P10297])

HSP 1 Score: 68.9 bits (167), Expect = 5.100e-8
Identity = 41/128 (32.03%), Postives = 73/128 (57.03%), Query Frame = 0 
Query:  193 REVNFIARSTSSVIAETYEEKGRKKRFSVLSLSIACLVSYLLVSIGVYGYWLEDWGAVRALYFGIVTLTSVGFGDHVPHNQMARLFTVFFAIVGISIVALAVGEISGYVIERQAAKVEEFNKLLAQKL 321
            R V  +A  T    AE+  +     R ++++L  A ++SY+ +SI V+ Y  EDW  V  +Y+ +V +T+VG+GD VP     +  T+FF+  GI  + +A+G+++ + ++RQ    +   K+  QKL
Sbjct:   63 RTVTNVAHQTIIAGAESARKGNENLRSNLVAL--ALVLSYVALSILVFHY-TEDWPIVDCVYYAMVIVTTVGYGDVVPVTTAGKAITIFFSFYGICTIGVALGQLASWFLQRQ----KHVTKMATQKL 183
[Close]
BLAST of NO29G01700 vs. NCBI_GenBank
Match: ETK79952.1 (hypothetical protein L915_14245 [Phytophthora parasitica])

HSP 1 Score: 68.9 bits (167), Expect = 5.100e-8
Identity = 41/128 (32.03%), Postives = 73/128 (57.03%), Query Frame = 0 
Query:  193 REVNFIARSTSSVIAETYEEKGRKKRFSVLSLSIACLVSYLLVSIGVYGYWLEDWGAVRALYFGIVTLTSVGFGDHVPHNQMARLFTVFFAIVGISIVALAVGEISGYVIERQAAKVEEFNKLLAQKL 321
            R V  +A  T    AE+  +     R ++++L  A ++SY+ +SI V+ Y  EDW  V  +Y+ +V +T+VG+GD VP     +  T+FF+  GI  + +A+G+++ + ++RQ    +   K+  QKL
Sbjct:   64 RTVTNVAHQTIIAGAESARKGNENLRSNLVAL--ALVLSYVALSILVFHY-TEDWPIVDCVYYAMVIVTTVGYGDVVPVTTAGKAITIFFSFYGICTIGVALGQLASWFLQRQ----KHVTKMATQKL 184
[Close]
BLAST of NO29G01700 vs. NCBI_GenBank
Match: KUF83902.1 (Copine-4 [Phytophthora nicotianae])

HSP 1 Score: 68.9 bits (167), Expect = 5.100e-8
Identity = 41/128 (32.03%), Postives = 73/128 (57.03%), Query Frame = 0 
Query:  193 REVNFIARSTSSVIAETYEEKGRKKRFSVLSLSIACLVSYLLVSIGVYGYWLEDWGAVRALYFGIVTLTSVGFGDHVPHNQMARLFTVFFAIVGISIVALAVGEISGYVIERQAAKVEEFNKLLAQKL 321
            R V  +A  T    AE+  +     R ++++L  A ++SY+ +SI V+ Y  EDW  V  +Y+ +V +T+VG+GD VP     +  T+FF+  GI  + +A+G+++ + ++RQ    +   K+  QKL
Sbjct:  810 RTVTNVAHQTIIAGAESARKGNENLRSNLVAL--ALVLSYVALSILVFHY-TEDWPIVDCVYYAMVIVTTVGYGDVVPVTTAGKAITIFFSFYGICTIGVALGQLASWFLQRQ----KHVTKMATQKL 930
[Close]
BLAST of NO29G01700 vs. NCBI_GenBank
Match: KUF88971.1 (hypothetical protein AM588_10003984 [Phytophthora nicotianae])

HSP 1 Score: 68.9 bits (167), Expect = 5.100e-8
Identity = 41/128 (32.03%), Postives = 73/128 (57.03%), Query Frame = 0 
Query:  193 REVNFIARSTSSVIAETYEEKGRKKRFSVLSLSIACLVSYLLVSIGVYGYWLEDWGAVRALYFGIVTLTSVGFGDHVPHNQMARLFTVFFAIVGISIVALAVGEISGYVIERQAAKVEEFNKLLAQKL 321
            R V  +A  T    AE+  +     R ++++L  A ++SY+ +SI V+ Y  EDW  V  +Y+ +V +T+VG+GD VP     +  T+FF+  GI  + +A+G+++ + ++RQ    +   K+  QKL
Sbjct:  718 RTVTNVAHQTIIAGAESARKGNENLRSNLVAL--ALVLSYVALSILVFHY-TEDWPIVDCVYYAMVIVTTVGYGDVVPVTTAGKAITIFFSFYGICTIGVALGQLASWFLQRQ----KHVTKMATQKL 838
The following BLAST results are available for this feature:
BLAST of NO29G01700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 19
Match NameE-valueIdentityDescription
EWM20296.12.300e-3778.85EF-Hand 1, calcium-binding site [Nannochloropsis g... [more]
EWM20297.12.300e-3778.85EF-Hand 1, calcium-binding site [Nannochloropsis g... [more]
XP_005854955.11.600e-3378.13potassium channel protein, partial [Nannochloropsi... [more]
XP_009529999.19.200e-1032.81hypothetical protein PHYSODRAFT_334425 [Phytophtho... [more]
XP_002998320.11.000e-831.25Voltage-gated Ion Channel (VIC) Superfamily [Phyto... [more]
GAX28462.12.300e-837.23potassium channel subfamily K, other eukaryote [Fi... [more]
XP_008910304.15.100e-832.03hypothetical protein PPTG_15051 [Phytophthora para... [more]
ETK79952.15.100e-832.03hypothetical protein L915_14245 [Phytophthora para... [more]
KUF83902.15.100e-832.03Copine-4 [Phytophthora nicotianae][more]
KUF88971.15.100e-832.03hypothetical protein AM588_10003984 [Phytophthora ... [more]

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Relationships

The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01700.1NO29G01700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO29G01700.2NO29G01700.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01700.1NO29G01700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO29G01700.2NO29G01700.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01700 ID=NO29G01700|Name=NO29G01700|organism=Nannochloropsis oceanica|type=gene|length=2781bp
CAGGCATCATGCCCAACAGCAACACAAACGACAAGACCGCTCCGTCGGCC
ACATCATCATCACTACCTCCCCTTATTGCTGCACCTTTAGTCCACCCACC
AAGACAACAGCAACCACCGCCCTCCCGGCAACCAAGCACCCGCGGCGATG
GTGCTCGTGCTGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGG
GGAGAGGGgtagggggaggaggtgccctcagatcaaataatggaccaaga
tcccccaagcactatcaaccgcacgcacgccatcccttgtcctcagCTCA
TCCGCCTCTCCCCAACGCCGCGCCTTCGTCCTCCTCCCCTTCCTCCGGTG
GCGGCGGTGTAAACAGTGCGCCTCGTAGGCATATGAACAAGGCAGCCACG
GTCTCTGTGTGGCATCAATTGCGAAACGGGCACATCCATAACACCATGGC
GGGCCCCGCGCGCTTTAACATGCTAAACCACCAGATGCACCACCATCCCC
ACGgtacctccctccctccctccctcccttcctttccccctccctccctt
cctcccgatagccccgtgtgtactcctctccctctctcctctttctcact
cctcttattcatttcttgtttggggtaatttcttctcctccatcttactc
ccccttcttgatccacaccacctgctccctgccttccctccctccctccc
tccctccctccctccctaccgcccgccctccaccaccgcgatttcactac
tcacattcctccttcccttctcctccctccctccctccttcagACGAGGA
GCCAATCCATGATCAATTTCTGTCTCCCTTCCCTCCCTCCCCCTCCGCCG
TCCCTCGTCCTCCCCTCCCTGGCCCTCCTACTCCCACGCGGCCCAAGCGC
GGAGAAGGGAATACGGGGCACACAGACGACGCAACATCAACAGCAGTAGC
GACAGCAGCAGCACCAGCAGTAACCAGCACAGCAGTAGAAGGAGAAGCAG
CAGCGGAGGGATCGAACGCCGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
AGGCCGTTGCTTCGGCCCCATGCCTTAGACCTTGCAGCCGAGGAACCGTG
CAGGgtgagaggagggaagggagagagggggggagggagcgagcgaggga
gggggggaagcggtctgtgtccttaaaatgtttgatttctcctttccacc
cttttttctcccatccttccctccctccctccctccctccctccctccct
ccctccctccttcggagacgaacaactcaccttctctccctctttctttt
cctccctccttctttgattctttccctgaatcccttcctccctccctccc
tccctccctccctcagGAGGTCAACTTCATCGCCCGGAGCACCAGCTCGG
TCATTGCAGAGACTTACGAGGAGAAGGGCCGCAAGgtagagagggaggga
gggacggagggagtgagggagggacggagggagagactacgcggggtgtg
gcaacgcatggcaaccaccaccacgccaacacttcttccctccctccctc
ccttcctccctccctccctccctccctccctccctccctccctccctccc
tctcccctcaagAAACGTTTCTCGGTGCTCTCCCTCTCCATCGCCTGCCT
CGTGTCCTACCTCCTCGTCTCCATTGGGGTCTACGGTTACTGGCTCGAGG
ACTGGGGCGCCGTTCGCGCCCTTTATTTCGGGATCGTCACGCTCACCAGg
caggatgggcaggcagcgggccctccctccctccctccctccctctgttt
tcttcctcccttcccttctctgcctttttccttcttgcggactcaccgac
aaaggatatgtgaaaaggcttcaacccctccctccctccctccctccctc
cctccctccctccagCGTGGGTTTCGGCGACCATGTGCCCCACAACCAGA
TGGCCCGGCTCTTTACGGTCTTCTTTGCCATCGTCGGCATCAGCATCGTC
GCCCTGGCCGTTGGGGAGATCAGCGGCTACGTCATCGAGCGGCAGGCGGC
TAAGGTGGAGGAATTCAATAAACTCCTCGCACAGAAGCTGGCGCAGgtac
gtgtgccctccctccccccctccccccctccctttcttcctcctaccgtc
tctctccgcatccgttcactttattgcattacttccctccctcccgccct
tccttcagCGCACCCGTGCTATCCATCGCAGCCCCACCGATGAGGACGAG
AACGAGGACGAGGACGAGGACGAGGACGAGGACGAGGACGGAGGGGAGGA
AGGGAGGGAGGAAGGGAGGGAGGAAGGAAGGGAGGAAGGGAGGGAGGAGG
GGCAGGCAGGGATGCCTCCGGGAGAGATGGACGAGGAGCAGGGAGGGGGG
GAGGGAGGGGGGGAGGGAGGGGGGAGGGAGGGGGAAGGACAGGGTTTACA
CCTGGGGTGCATCAGACGCTGGACGACTCGTCGGGGAGTGTGTATTCCTA
CATGTCCTCCCTCACGACCTCCTCCTGGTGCTTGGCCGCCTTGGCGGATC
GGATCGCGGCCTTTGCCTCGTGGAGGGAACAGCGGAGACAGGCGGCGGCG
GCGACGAAAGAAGGGGCGGCAAAGAAAGGGAGGAAGAGGGAAAAGAAGAG
GAAGAGGCAGGAGAGGAAGGAGGGGGGGGATTGATGGGCGGGGGGAGGAG
GAGGAGGAGGAGGAGGGGGATGAAGGGCCGGGGGAGGGAGGGGGGAGGGA
GGGGCAGGGAACTCGGCAATTGAGAAGTTAG
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protein sequence of NO29G01700.1

>NO29G01700.1-protein ID=NO29G01700.1-protein|Name=NO29G01700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp
MVLVLKEEEEEEEEEEEGERAHPPLPNAAPSSSSPSSGGGGVNSAPRRHM
NKAATVSVWHQLRNGHIHNTMAGPARFNMLNHQMHHHPHDEEPIHDQFLS
PFPPSPSAVPRPPLPGPPTPTRPKRGEGNTGHTDDATSTAVATAAAPAVT
STAVEGEAAAEGSNAEGGREGGREGRPLLRPHALDLAAEEPCREVNFIAR
STSSVIAETYEEKGRKKRFSVLSLSIACLVSYLLVSIGVYGYWLEDWGAV
RALYFGIVTLTSVGFGDHVPHNQMARLFTVFFAIVGISIVALAVGEISGY
VIERQAAKVEEFNKLLAQKLAQRTRAIHRSPTDEDENEDEDEDEDEDEDG
GEEGREEGREEGREEGREEGQAGMPPGEMDEEQGGGEGGGEGGGREGEGQ
GLHLGCIRRWTTRRGVCIPTCPPSRPPPGAWPPWRIGSRPLPRGGNSGDR
RRRRRKKGRQRKGGRGKRRGRGRRGRRGGIDGRGEEEEEEEGDEGPGEGG
GREGQGTRQLRS*
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protein sequence of NO29G01700.2

>NO29G01700.2-protein ID=NO29G01700.2-protein|Name=NO29G01700.2|organism=Nannochloropsis oceanica|type=polypeptide|length=464bp
MNKAATVSVWHQLRNGHIHNTMAGPARFNMLNHQMHHHPHDEEPIHDQFL
SPFPPSPSAVPRPPLPGPPTPTRPKRGEGNTGHTDDATSTAVATAAAPAV
TSTAVEGEAAAEGSNAEGGREGGREGRPLLRPHALDLAAEEPCREVNFIA
RSTSSVIAETYEEKGRKKRFSVLSLSIACLVSYLLVSIGVYGYWLEDWGA
VRALYFGIVTLTSVGFGDHVPHNQMARLFTVFFAIVGISIVALAVGEISG
YVIERQAAKVEEFNKLLAQKLAQRTRAIHRSPTDEDENEDEDEDEDEDED
GGEEGREEGREEGREEGREEGQAGMPPGEMDEEQGGGEGGGEGGGREGEG
QGLHLGCIRRWTTRRGVCIPTCPPSRPPPGAWPPWRIGSRPLPRGGNSGD
RRRRRRKKGRQRKGGRGKRRGRGRRGRRGGIDGRGEEEEEEEGDEGPGEG
GGREGQGTRQLRS*
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Synonyms
Publications