NO29G01680, NO29G01680 (gene) Nannochloropsis oceanica

Overview
NameNO29G01680
Unique NameNO29G01680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1857
Alignment locationchr29:527466..529322 +

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Properties
Property NameValue
DescriptionDNA-binding SAP
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:527466..529322 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036361SAP_dom_sf
IPR032552RSB_motif
IPR003034SAP_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
BLAST of NO29G01680 vs. NCBI_GenBank
Match: EWM21349.1 (DNA-binding SAP [Nannochloropsis gaditana])

HSP 1 Score: 204.5 bits (519), Expect = 9.300e-49
Identity = 136/321 (42.37%), Postives = 160/321 (49.84%), Query Frame = 0
Query:  271 ALAVPDPKNPRSATLRVDGFIRPFRLTGVKDLLEEKGGGPLVGEHGLWMDAIKTHCYATFESEDSAARARVALYNLTWPERGGVLRADFAPITALQAFEDEKAAXXXXXXXK-------------SLPPMPTPAAVVLXXXXXXXXXXXXXXXXXXKLKVSNTLLPNAVSVEMGVAATPGLIMHPSELRETTGGGMKVQGGGDTSGKRADSFEMATGAARRKRELGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTLEELFRFTTTQPKLYWLPLPEDEVALKRQRLKELKAAEKARGRERDATQKEGAIQRVAD 579
            A  VP PKNPRSAT+RVDGFIRPFRL   K++LEE+GGGPLVGE G+WMD IKTHCYATF+SE+ AARAR+AL+   WPERGGVL ADF+P TA Q  E++K         +               P   TP    L                    +VSN+L+P     E    A P L                   GG  SG          G+ RRKRELGP                                 PTLEELFR T+T PKLYW P+PED+VA KR+RLKELKA  K   ++R+A    G  Q  AD
Sbjct:  238 AALVPAPKNPRSATIRVDGFIRPFRLVAAKEMLEERGGGPLVGEDGMWMDVIKTHCYATFQSEECAARARIALHKYQWPERGGVLTADFSPKTAAQVTEEDKLLKKARAASRLQEGGDKTGGARPGEPLAATPRTTALAAASAETQ------------RVSNSLVPPPAPFE----APPHL-------------------GGAESG----------GSVRRKRELGP----SPERIVRARRDAEGAKEAVKEEEDEKPAMPTLEELFRSTSTPPKLYWTPVPEDQVARKRERLKELKAEAKLEAKKREAA--GGVRQPAAD 507          
BLAST of NO29G01680 vs. NCBI_GenBank
Match: XP_005853605.1 (apoptotic chromatin condensation inducer in the nucleus, partial [Nannochloropsis gaditana CCMP526] >EKU22753.1 apoptotic chromatin condensation inducer in the nucleus, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 163.7 bits (413), Expect = 1.800e-36
Identity = 73/102 (71.57%), Postives = 85/102 (83.33%), Query Frame = 0
Query:  271 ALAVPDPKNPRSATLRVDGFIRPFRLTGVKDLLEEKGGGPLVGEHGLWMDAIKTHCYATFESEDSAARARVALYNLTWPERGGVLRADFAPITALQAFEDEK 373
            A  VP PKNPRSAT+RVDGFIRPFRL   K++LEE+GGGPLVGE G+WMD IKTHCYATF+SE+ AARAR+AL+   WPERGGVL ADF+P TA Q  E++K
Sbjct:  238 AALVPAPKNPRSATIRVDGFIRPFRLVAAKEMLEERGGGPLVGEDGMWMDVIKTHCYATFQSEECAARARIALHKYQWPERGGVLTADFSPKTAAQVTEEDK 339          
BLAST of NO29G01680 vs. NCBI_GenBank
Match: CBJ25459.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 95.9 bits (237), Expect = 4.700e-16
Identity = 79/272 (29.04%), Postives = 110/272 (40.44%), Query Frame = 0
Query:  284 TLRVDGFIRPFRLTGVKDLLEEKGGGPLVGEHGLWMDAIKTHCYATFESEDSAARARVALYNLTWPERG-GVLRADFAPITALQAFEDEKAAXXXXXXXKSLPPMPTPAAVVLXXXXXXXXXXXXXXXXXXKLKVSNTLLPNAVSVEMGVAATPGLIMHPSELRETTGGG--MKVQGGGDTSGKRADSFEMATGAARRKRELGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTLEELFRFTTTQPKLYWLPLPEDEVALKRQRLKE 553
            T+RVD F+RPF     K LLEEK   P++ E G WMD IKTHCYATF+ +++A RA  AL  L WP +    L A    ++A    E+ +A        +  P M  PA V                     L    T    A S   G     G   H ++      GG   +V+G G               AA  + E+G                                    L+++FR T  +P LYWLPL E+EV L++++++E
Sbjct:  366 TIRVDNFVRPFTAQQAKKLLEEKAEAPVM-EGGFWMDGIKTHCYATFDGKEAAERAMAALQGLQWPAQSFKRLEATLGDMSA----EEARARDGSKRSNRPFPGMDRPARV---------------------LGPRVTPTAEAKSSPEGGGQANGSGAHATDESSAVAGGSTARVRGRGSVQAPGVAGSRGGVLAANVEAEVGRSRGQDRGGLQQPQQGPEEEAEPI-----------ILDDMFRKTDAKPSLYWLPLSEEEVGLRKKKMEE 600          
BLAST of NO29G01680 vs. NCBI_GenBank
Match: XP_008607648.1 (hypothetical protein SDRG_03783 [Saprolegnia diclina VS20] >EQC38824.1 hypothetical protein SDRG_03783 [Saprolegnia diclina VS20])

HSP 1 Score: 87.8 bits (216), Expect = 1.300e-13
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 0
Query:  272 LAVPDPKNPRSATLRVDGFIRPFRLTGVKDLLEEKGGGPLVGEHGLWMDAIKTHCYATFESEDSAARARVALYNLTWP-ERGGVLRADFAPITA 365
            ++VP  KNP S TLR+D F+RPF L  V  L++    G  V +HG W+D IKTHCY TF + + A   R  L+ + WP   G  L  D++  TA
Sbjct:  165 MSVPPAKNPLSCTLRIDNFVRPFTLPAVHALVQ--ADGSFVEDHGFWIDGIKTHCYVTFATPEIATATRQRLHGVVWPAHHGKTLSVDYSASTA 256          
BLAST of NO29G01680 vs. NCBI_GenBank
Match: XP_008607649.1 (hypothetical protein, variant [Saprolegnia diclina VS20] >EQC38825.1 hypothetical protein, variant [Saprolegnia diclina VS20])

HSP 1 Score: 87.8 bits (216), Expect = 1.300e-13
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 0
Query:  272 LAVPDPKNPRSATLRVDGFIRPFRLTGVKDLLEEKGGGPLVGEHGLWMDAIKTHCYATFESEDSAARARVALYNLTWP-ERGGVLRADFAPITA 365
            ++VP  KNP S TLR+D F+RPF L  V  L++    G  V +HG W+D IKTHCY TF + + A   R  L+ + WP   G  L  D++  TA
Sbjct:  163 MSVPPAKNPLSCTLRIDNFVRPFTLPAVHALVQ--ADGSFVEDHGFWIDGIKTHCYVTFATPEIATATRQRLHGVVWPAHHGKTLSVDYSASTA 254          
BLAST of NO29G01680 vs. NCBI_GenBank
Match: XP_020697677.1 (actin cytoskeleton-regulatory complex protein PAN1 [Dendrobium catenatum] >PKU73839.1 hypothetical protein MA16_Dca011986 [Dendrobium catenatum])

HSP 1 Score: 87.8 bits (216), Expect = 1.300e-13
Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = 0
Query:  274 VPDPKNPRSATLRVDGFIRPFRLTGVKDLLEEKGGGPLVGEHGLWMDAIKTHCYATFESEDSAARARVALYNLTWPERGG-VLRADF 360
            VP PK P + +LR+D F+RPF L  V++LL + G          WMD IKTHCY T+ S + AA  R A+YN+ WP  GG +L A+F
Sbjct:  639 VPTPKKPATTSLRIDNFLRPFTLKAVQELLAQTG-----NVCDFWMDHIKTHCYVTYSSVEEAAETRKAVYNIQWPPNGGRLLAAEF 720          
BLAST of NO29G01680 vs. NCBI_GenBank
Match: XP_008875997.1 (hypothetical protein H310_11196 [Aphanomyces invadans] >ETV95296.1 hypothetical protein H310_11196 [Aphanomyces invadans])

HSP 1 Score: 86.3 bits (212), Expect = 3.700e-13
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 0
Query:  273 AVPDPKNPRSATLRVDGFIRPFRLTGVKDLLEEKGGGPLVGEHGLWMDAIKTHCYATFESEDSAARARVALYNLTWPERGG-VLRADFAPITAL 366
            A+PD     + T+R+D FIRPF L  VK  ++E+       E+G WMDAIKTHCY T+ + D+A  AR  +Y  TWPE  G  L  +F+  TA+
Sbjct:  150 AIPDSMIAPTPTIRIDNFIRPFTLNAVKAFVQEEAA---FVENGFWMDAIKTHCYVTYATTDAAIAARGRIYGTTWPELSGRRLTVEFSAETAM 240          
BLAST of NO29G01680 vs. NCBI_GenBank
Match: XP_024396615.1 (apoptotic chromatin condensation inducer in the nucleus-like [Physcomitrella patens] >XP_024396616.1 apoptotic chromatin condensation inducer in the nucleus-like [Physcomitrella patens] >XP_024396617.1 apoptotic chromatin condensation inducer in the nucleus-like [Physcomitrella patens] >XP_024396618.1 apoptotic chromatin condensation inducer in the nucleus-like [Physcomitrella patens] >PNR39790.1 hypothetical protein PHYPA_020070 [Physcomitrella patens])

HSP 1 Score: 84.7 bits (208), Expect = 1.100e-12
Identity = 44/103 (42.72%), Postives = 60/103 (58.25%), Query Frame = 0
Query:  274 VPDPKNPRSATLRVDGFIRPFRLTGVKDLLEEKGGGPLVGEHGLWMDAIKTHCYATFESEDSAARARVALYNLTWPERGG-VLRADFAPITALQAFED-EKAA 375
            VP    P + +L++D F+RPF    VK+LL + G         +WMD IKTHCY T+ S + A   R ALYNL WP +GG +L A+F   + ++   D EKAA
Sbjct:  498 VPPSAKPATTSLKIDKFLRPFTFKAVKELLAQTG-----TVEDVWMDQIKTHCYVTYSSVEEATATRNALYNLQWPPQGGRLLTAEFVDPSEVKVRSDGEKAA 595          
BLAST of NO29G01680 vs. NCBI_GenBank
Match: XP_006827011.1 (apoptotic chromatin condensation inducer in the nucleus isoform X1 [Amborella trichopoda] >ERM94248.1 hypothetical protein AMTR_s00010p00217580 [Amborella trichopoda])

HSP 1 Score: 84.7 bits (208), Expect = 1.100e-12
Identity = 42/87 (48.28%), Postives = 52/87 (59.77%), Query Frame = 0
Query:  274 VPDPKNPRSATLRVDGFIRPFRLTGVKDLLEEKGGGPLVGEHGLWMDAIKTHCYATFESEDSAARARVALYNLTWPERGG-VLRADF 360
            VP  + P + +LR+D F+RPF L  V++LL + G          WMD IKTHCY T+ SED A   R ALYNL WP  GG  L A+F
Sbjct:  552 VPPSEKPATTSLRIDQFLRPFTLKAVQELLAKTG-----TVSKFWMDHIKTHCYVTYSSEDEAMATRNALYNLQWPSNGGRCLTAEF 633          
BLAST of NO29G01680 vs. NCBI_GenBank
Match: XP_011621565.1 (apoptotic chromatin condensation inducer in the nucleus isoform X2 [Amborella trichopoda])

HSP 1 Score: 84.7 bits (208), Expect = 1.100e-12
Identity = 42/87 (48.28%), Postives = 52/87 (59.77%), Query Frame = 0
Query:  274 VPDPKNPRSATLRVDGFIRPFRLTGVKDLLEEKGGGPLVGEHGLWMDAIKTHCYATFESEDSAARARVALYNLTWPERGG-VLRADF 360
            VP  + P + +LR+D F+RPF L  V++LL + G          WMD IKTHCY T+ SED A   R ALYNL WP  GG  L A+F
Sbjct:  551 VPPSEKPATTSLRIDQFLRPFTLKAVQELLAKTG-----TVSKFWMDHIKTHCYVTYSSEDEAMATRNALYNLQWPSNGGRCLTAEF 632          
The following BLAST results are available for this feature:
BLAST of NO29G01680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21349.19.300e-4942.37DNA-binding SAP [Nannochloropsis gaditana][more]
XP_005853605.11.800e-3671.57apoptotic chromatin condensation inducer in the nu... [more]
CBJ25459.14.700e-1629.04conserved unknown protein [Ectocarpus siliculosus][more]
XP_008607648.11.300e-1343.62hypothetical protein SDRG_03783 [Saprolegnia dicli... [more]
XP_008607649.11.300e-1343.62hypothetical protein, variant [Saprolegnia diclina... [more]
XP_020697677.11.300e-1347.13actin cytoskeleton-regulatory complex protein PAN1... [more]
XP_008875997.13.700e-1344.68hypothetical protein H310_11196 [Aphanomyces invad... [more]
XP_024396615.11.100e-1242.72apoptotic chromatin condensation inducer in the nu... [more]
XP_006827011.11.100e-1248.28apoptotic chromatin condensation inducer in the nu... [more]
XP_011621565.11.100e-1248.28apoptotic chromatin condensation inducer in the nu... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL062nonsL062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR079ngnoR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005256NSK005256Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01680.1NO29G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|655484gene_8347Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100075g11gene9081Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01680.1NO29G01680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01680 ID=NO29G01680|Name=NO29G01680|organism=Nannochloropsis oceanica|type=gene|length=1857bp
ATGGTGCTGCCTACAGTGGAGGATGTGAAGGGCATGAAGGTCGTGGAGCT
GAAGGCCGAGTTGGCCAAGCACGACCTTCCCACGACGGGGCTGAAGGCCG
AGTTGCAAAAACGGTTGCTCGAATACATTGAGAACGCGGGAGAAGGAGGA
GAAGGAGGCGACGGCGGCAGCAGCGGCGCAGGTGGCAACGAAGTTGAGGA
GACAGTGGCCGGAGCTGTAACACTTAAGCTAAAGGAGGAGAAGGAGAGGG
AGAAGGAGCAAGAAGAGGTGAGTACAGAGTCGTCTGGTCGATCGCAACGC
GGGCGTTCCCCTTCCAAGAAAGCGGGCCACGTCCAAGCACCATCCCCGGG
TCGTAAGGCGAAAAAAGAGGAGGCGGAGACAGAAGGGGAGGGAGAGGCCG
AGACCAAGGGTAGGAAGGAGGATAAAGAGGCGTTCATTGCCCCTGCTTCA
GAGCCAGCTCCCCCTGCACTTGCTGCTCCTGCTCCCGCGGCGGCACCACC
GGTCAAGCCCACCATCACCCCTTCAGCTGTCCCATTACCGTCCTCTTCTT
CCCCTTCTCCTGTGGCTGTACCTCTAGCATTGACACCTGTCCCTGCTATG
TCCACTGCTCCGAAGCCTCAGACTTCTTCACGTGTGTTCGAGGCCGCCAT
GGCTGCGACAGCTGCACCCGCTGCTGCTGCATCTGCTACTGCAGCTGTTC
TCACTGGTAAAGTCACCGCAGCTCCTACTCCTGCTCCTACCATGACGGAA
AGCAAGCCTCCTTCTGTCCCTCTTGCCGAGCCCACCGTCGAAGCTGATAC
AGAAGCTGCTGCTCTTGCTGTTCCCGACCCCAAAAACCCTCGAAGCGCTA
CCTTGCGTGTCGACGGTTTCATCCGCCCTTTCCGCCTGACTGGGGTGAAG
GATCTACTGGAAGAGAAGGGCGGAGGACCGCTCGTTGGTGAGCATGGGCT
GTGGATGGACGCCATCAAAACCCACTGCTACGCCACCTTTGAATCCGAAG
ATTCGGCCGCCAGGGCGCGTGTGGCTCTCTACAATCTCACGTGGCCTGAG
CGAGGTGGGGTGTTGAGAGCCGACTTTGCGCCCATCACTGCACTGCAAGC
CTTCGAGGACGAGAAGGCTGCTAAGGCCGCGAAGGTCGCTCGGAAGTCTC
TGCCCCCCATGCCCACCCCGGCGGCAGTAGTATTGGGCGCTGCTGTAGCT
TCTCCAGCAGCGGCAACGACAGCGGCAGAAGCAGCAGCCAAGTTGAAGGT
GAGCAATACCTTGCTACCTAATGCTGTGTCTGTGGAAATGGGGGTGGCGG
CGACGCCGGGCCTGATCATGCATCCATCTGAGCTTCGAGAGACGACAGGT
GGGGGTATGAAAGTGCAGGGAGGAGGGGATACGAGTGGGAAGCGAGCAGA
CTCCTTTGAGATGGCGACAGGCGCAGCGCGAAGAAAGAGGGAGCTAGGCC
CATCCCCGGATAGGAATGTCAAGGCCAAAGGGGAGAGGGAGGGGGATGGA
GGGGCCGAGGGAGGGAAGGGCAAGGAGAAAGAGAAGAAGAAGATGGCGAT
GCCTACCTTGGAGGAATTGTTTCGTTTCACCACCACCCAGCCAAAGCTGT
ACTGGTTGCCTTTGCCTGAGGACGAGGTGGCACTGAAGCGGCAGCGACTC
AAGGAGTTGAAGGCGGCGGAGAAGGCTCGGGGTAGGGAGCGAGACGCCAC
GCAGAAGGAGGGGGCAATCCAGCGGGTGGCGGATAGCGGGGCACGGGGGG
GGGGGGGCGACGAGGAGGGAGTGGGGATGGAGGGGGTTGGAGGAACAGAT
CGCGGGCCCGTTCGCGTTCGCCGCCTCGGAGACGATGGTGAGAGTGTAGG
GGAGTGA
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protein sequence of NO29G01680.1

>NO29G01680.1-protein ID=NO29G01680.1-protein|Name=NO29G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=619bp
MVLPTVEDVKGMKVVELKAELAKHDLPTTGLKAELQKRLLEYIENAGEGG
EGGDGGSSGAGGNEVEETVAGAVTLKLKEEKEREKEQEEVSTESSGRSQR
GRSPSKKAGHVQAPSPGRKAKKEEAETEGEGEAETKGRKEDKEAFIAPAS
EPAPPALAAPAPAAAPPVKPTITPSAVPLPSSSSPSPVAVPLALTPVPAM
STAPKPQTSSRVFEAAMAATAAPAAAASATAAVLTGKVTAAPTPAPTMTE
SKPPSVPLAEPTVEADTEAAALAVPDPKNPRSATLRVDGFIRPFRLTGVK
DLLEEKGGGPLVGEHGLWMDAIKTHCYATFESEDSAARARVALYNLTWPE
RGGVLRADFAPITALQAFEDEKAAKAAKVARKSLPPMPTPAAVVLGAAVA
SPAAATTAAEAAAKLKVSNTLLPNAVSVEMGVAATPGLIMHPSELRETTG
GGMKVQGGGDTSGKRADSFEMATGAARRKRELGPSPDRNVKAKGEREGDG
GAEGGKGKEKEKKKMAMPTLEELFRFTTTQPKLYWLPLPEDEVALKRQRL
KELKAAEKARGRERDATQKEGAIQRVADSGARGGGGDEEGVGMEGVGGTD
RGPVRVRRLGDDGESVGE*
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Synonyms
Publications