NO29G01630, NO29G01630 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO29G01630 vs. NCBI_GenBank
Match: EWM21344.1 (transcription intermediary factor 1-alpha [Nannochloropsis gaditana]) HSP 1 Score: 242.7 bits (618), Expect = 3.800e-60 Identity = 133/277 (48.01%), Postives = 154/277 (55.60%), Query Frame = 0
Query: 263 KKKRRVPNLLLLCSSCPRAYHCRCLHYRALPSDMQSWVCAECRLPQDEPTRAVVEELGLEATAEKDAKKCLDWLLKHELSGAFGEPVEVEAVAGYSDYVRRPMDLSTIWDRYFG-----------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKK-----------------FPLVDFVSDVRRVWFNCGMFNSKKTVLAVIGDLMSRCFERNVRERLVRYMEGEEREECXXXXXXXXXXXXXXLRKLKKEGRVPEGYVCGLGL 512
KKK R PN LLLC+ CPRAYH RCLH + LP D W+CAECRLP+DEPTRA+VEELGLEAT E+DAKK L +LLKHELSGAF EPVEVE V Y+DYVR MDL TIWDRYFG A K+ FPLVDFV DVRRVWFNCGM+N +V IG+L+SRCFERNV +RL+RY+ E+ L+ L+ GR+PE Y G+GL
Sbjct: 866 KKKGRAPNALLLCTHCPRAYHSRCLHLKHLPPDPAIWLCAECRLPEDEPTRALVEELGLEATPERDAKKILQFLLKHELSGAFCEPVEVEKVPDYADYVREAMDLQTIWDRYFGKGGKAVAAAETAGTEGDTVRRRKKTRDPGGAGVTGGSRTEECGESMDESKARKQEGGLDGDGSDGGVRVAGFPLVDFVCDVRRVWFNCGMYNGVGSVYWAIGELLSRCFERNVAQRLMRYLSEGEKRRLEVRTLEMRRQGVQDLQTLEAAGRIPEDYRNGMGL 1142
BLAST of NO29G01630 vs. NCBI_GenBank
Match: ETP36476.1 (hypothetical protein F442_15577, partial [Phytophthora parasitica P10297]) HSP 1 Score: 72.0 bits (175), Expect = 8.800e-9 Identity = 54/196 (27.55%), Postives = 76/196 (38.78%), Query Frame = 0
Query: 272 LLLCSSCPRAYHCRCLHYRALPSDMQSWVCAECRLPQ--DEPTRAVVEELGLEATAEKDAKKCLDWLLKHELSGAFGEPVEVEAVAGYSDYVRRPMDLSTIWDRYFGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKFPLVDFVSDVRRVWFNCGMFNSKKTVLAVIGDLMSRCFERNVRERL 466
L+ C CPR+YH +CLH W CAEC+ P D + AV E T K + L H S F P VE V Y+ V++PMDLS I ++ KK + F +D+R +W NC +FN + + D++S FER +E +
Sbjct: 828 LVCCDKCPRSYHLKCLHMTENDLPEGDWQCAECKKPSRFDAYSTAV----AAEKTLLDRCLKIVSCLKSHPFSKPFLTP--VENVPMYTRVVKQPMDLSKIENK---------------------------LKKGAYVVDSNMAASGAKKLDVTHFANDIRLMWSNCKLFNDDGSGITRAADILSAGFERLYKESI 990
BLAST of NO29G01630 vs. NCBI_GenBank
Match: XP_002905445.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY68286.1 conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 70.1 bits (170), Expect = 3.300e-8 Identity = 54/194 (27.84%), Postives = 75/194 (38.66%), Query Frame = 0
Query: 272 LLLCSSCPRAYHCRCLHYRALPSDMQSWVCAECRLPQ--DEPTRAVVEELGLEATAEKDAKKCLDWLLKHELSGAFGEPVEVEAVAGYSDYVRRPMDLSTIWDRYFGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKFPLVDFVSDVRRVWFNCGMFNSKKTVLAVIGDLMSRCFERNVRE 464
L+ C CPR+YH +CLH W CAEC+ P D + AV E L K + L H S F P VE V Y+ V++PMDLS I ++ KK + F +D+R +W NC +FN + + D++S FER +E
Sbjct: 870 LVCCDKCPRSYHLKCLHMTENDLPEGDWQCAECKKPSRFDGYSTAVAAEQNL----LDRCLKIVACLKSHPFSKPFLTP--VENVPMYTRVVKQPMDLSKIENK---------------------------LKKGAYVVDSNMAASGAKKLDVTHFANDIRLMWSNCKLFNDDGSGITRAADILSAGFERLYKE 1030
BLAST of NO29G01630 vs. NCBI_GenBank
Match: XP_009538761.1 (hypothetical protein PHYSODRAFT_342104 [Phytophthora sojae] >EGZ05900.1 hypothetical protein PHYSODRAFT_342104 [Phytophthora sojae]) HSP 1 Score: 68.9 bits (167), Expect = 7.400e-8 Identity = 50/194 (25.77%), Postives = 75/194 (38.66%), Query Frame = 0
Query: 272 LLLCSSCPRAYHCRCLHYRALPSDMQSWVCAECRLPQDEPTRAVVEELGLEATAEKDAKKCLDWLLKHELSGAFGEPVEVEAVAGYSDYVRRPMDLSTIWDRYFGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKFPLVDFVSDVRRVWFNCGMFNSKKTVLAVIGDLMSRCFERNVRERL 466
L+ C CPR+YH +CLH W CAEC+ P +V + E + K ++ L H S F P VE V Y+ V++PMDLS I ++ K+ F +D+R +W NC +FN + + D++S FER +E +
Sbjct: 946 LVCCDKCPRSYHLKCLHMTENDLPEGDWQCAECKKPSRFDAYSVA--VASEQSLLDRCLKIVECLKSHPFSKPFLTP--VENVPLYTRVVKQPMDLSKIENK---------------------------LKKGAYIVDSNTVAAGVKELDSTHFANDIRLMWSNCKLFNDDGSGITRAADILSAGFERLYKESI 1108
BLAST of NO29G01630 vs. NCBI_GenBank
Match: POM62694.1 (Zinc finger domain containing hypothetical protein, PHD-finger [Phytophthora palmivora var. palmivora]) HSP 1 Score: 67.4 bits (163), Expect = 2.200e-7 Identity = 53/199 (26.63%), Postives = 74/199 (37.19%), Query Frame = 0
Query: 272 LLLCSSCPRAYHCRCLHYRALPSDMQSWVCAECRLPQ--DEPTRAVVEELGLEATAEKDAKKCL---DWLLKHELSGAFGEPVEVEAVAGYSDYVRRPMDLSTIWDRYFGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKFPLVDFVSDVRRVWFNCGMFNSKKTVLAVIGDLMSRCFERNVRERL 466
L+ C CPR++H +CLH W C EC+ P D + AV E L KCL + L H S F P VE V Y+ V++PMDLS I K+ F +D+R +W NC +FN + + D++S FER +E +
Sbjct: 841 LVCCDKCPRSFHLKCLHMTENDLPQGDWQCDECKKPSRFDAYSTAVASEQSL-------LDKCLKIVECLKSHPFSKPFLTP--VENVPMYTRVVKQPMDLSKI---------------------------EIKLKKGAYIVDSNTVAAGVKELDCTHFANDIRLMWSNCKLFNDDGSGITRAADILSAGFERVYKESI 1003 The following BLAST results are available for this feature:
BLAST of NO29G01630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO29G01630 ID=NO29G01630|Name=NO29G01630|organism=Nannochloropsis oceanica|type=gene|length=2253bpback to top protein sequence of NO29G01630.1 >NO29G01630.1-protein ID=NO29G01630.1-protein|Name=NO29G01630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=751bpback to top Synonyms
Publications
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