NO29G01560, NO29G01560 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO29G01560 vs. NCBI_GenBank
Match: EWM26817.1 (Pectin lyase fold/virulence factor [Nannochloropsis gaditana]) HSP 1 Score: 192.2 bits (487), Expect = 8.600e-45 Identity = 98/191 (51.31%), Postives = 129/191 (67.54%), Query Frame = 0 Query: 132 GCTPSTGKELREVVESSTCTVVTLMPGVTYLLSDFIRVSRRISIIGRPLDMPTIDAHLAYRAFTVEPGGLLDLRFVRIFRGKPIRVARSLY-EIRGGALYIRRGGRAVITSCLLTVNPILITEFLI-SQSQATVRLLGGYILQEEGTLVITDVRIYVTRPGVLFREIYTVGGQVLVLGGNLVATGCTFLGN 321 GCTP TG +LR +VE+ +C V+TL PGV Y+L + I V R + IIGRPL +P IDAHL RAF+VE G LDLRFV+++RG P+ V +Y E+RGG +IR GG V T CL+ V+ + + L+ S + T RL GG++L E GTL + D + + RPGVL RE+YTVGG +LV+ GNL TG T N Sbjct: 187 GCTPDTGVQLRSLVETGSCPVITLTPGVRYVLDEEIHVRRAVVIIGRPLTLPVIDAHLIARAFSVEAKGRLDLRFVKVWRGVPMAVVDEVYLELRGGVAWIREGGEGVFTGCLMLVHDDEVGDVLLASDLRVTARLYGGFLLLEAGTLRVRDCHMLLQRPGVLLREVYTVGGYILVVSGNLFMTGSTMTAN 377
BLAST of NO29G01560 vs. NCBI_GenBank
Match: EWM22289.1 (Pectin lyase fold/virulence factor [Nannochloropsis gaditana]) HSP 1 Score: 168.3 bits (425), Expect = 1.300e-37 Identity = 481/1133 (42.45%), Postives = 605/1133 (53.40%), Query Frame = 0 Query: 132 GCTPSTGKELREVVESSTCTVVTLMPGVTYLLSDFIRVSRRISIIGRPLDMPTIDAHLAYRAFTVEPGGLLDLRFVRIFRGKPIRVA-RSLYEIRGGALYIRRGGRAVITSCLLTVNPILITEFL-ISQSQATVRLLGGYILQEEGTLVITDVRIYVTRPGVLFREIYTVGGQVLVLGGNLVATGCTFLGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYQGGTYFLFHGNRQLAQIWIAGHDVVLKS---NKT--FSGALASRDGVTYIPKRNKTMR-VSMK--------NVAFKKYNEMEVERVFGLKTHHRH-------LASLRSNVDKLLVQGAQQRFLEESKAVST-----PLVL------------------------------------ATSATIA---------TQMGADVEANIAAVE--------DGMLRMPVLGEVY----IPPIP-QDVRTDNVYLAGALDECSLCDIHPGRTFDNVDGPGA-AACAIADSCDSVLGADGSLFP---------GSTKAEQ----MWNPPAGNDQANSSIAVIELQAWYTP----------TSPSASRIDPASVAIAVEQASMALGLPQRYHLKVQPDTVNPLAFHNDEYVIAAQTDSKENGGLNAGEYGTTLVDEEAELLEALLKEGERKMMYEECTLGKTFKFYLVSDWRNVTDAHMKAFKRQEGAKALGLALQD---------AQPVDER--------VQICEARVKTAVPLFVPG------------------------RKVSLFKDYAANDG---------------KTSSLFALGQQDMLPLAVAELTDV-----ATGNRVDDVQIGETYTLDLQHFPPSL---PVTVKLVPRNGLAVMILGIFSSQPTNDVAQAWNWT------VSKAVAPGAYYLEVVGKKAGVFD 1085 GCTP +ELR +++ +TC +TL+P Y +++ + + RR++++GRPL +P IDAH RAF VE GG LD+RFV I +GK + V LY +RG YIRRGG A+ T C + N FL I+ Q V++ GG I+ E GTL +TD ++ R G+ FREI VGG+ LVLGGN+ TGC F+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + +R L I++AG++V L + N T F+ ++ G T + R +S + + + E E GL R LA+ +V+ RFL S T P V AT+A T G + +A+V DG L Y IP + + +TD +Y+A +D C +CD+ PG TFDNVDGPGA +AC + ++C + + +L P G EQ MW ANS++ ++E+++ +TP SP+ + ++ VA A+ +A ++LGL +R+HL+V+P + N + + + D++ +YG+ + AE+ E C ++FK YLVSDW+NVTD + K G KAL LALQ A D +CE V L+VP S F + DG + +L + L L + + TD RVD V+I E Y+L L +FP + +TV+ VP G V++ + S Q W+W + V YYLEV FD Sbjct: 8 GCTPKNAEELRYMIDHTTCPRLTLVPATNYSITEQLVIRRRVTLVGRPLGLPIIDAHNTTRAFLVEAGGFLDVRFVEIVKGKFVEVVPLVLYRLRGPTCYIRRGGVALFTGCRFSANWRNAALFLGITPPQTNVQVFGGGIVAESGTLRVTDCHVFRPRIGIAFREIQFVGGEFLVLGGNMYLTGCIFVNMAIFASSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPATPVAFRSRGLVAIYVAGNNVFLSTQLGNATVLFNVLTVNKHGQTDWSRNIFVARKISWRFTDVGPNPDDFVGRRLEAPGENKAGLDPAKRSGLGKPATLAARGEDVEVRQTHPTVPRFLTGSLGSETSFDVKPTVTDILNKYLPVEDVESIAEDTTGEEGHDRVEGHGNQNDGPEATLAKGGPETSPNTSQGRVEDNAVASVTGPKTNYSGDGDLGNITHNAFYAFAEIPGLKVERTKTDKIYVAAPMDVCGVCDVTPGNTFDNVDGPGALSACGMQNTCATSDASTLALPPGGEGDGNGAGQAGGEQPGSGMWVTSREEKSANSTVQLLEIRSTFTPFAAPPLSSSGASPAVAGVNKIEVAAALGEAIVSLGLSERWHLRVEPSWESS---KNVDPYLRLEGDAEMEESDATFDYGSI---DPAEVAN-----------QEACGRKESFKAYLVSDWKNVTDEISRKLKTSTGTKALTLALQKEVEHTAAVAANATDGENDGGMPAPPSVCELVVYRTTSLYVPSTTFAGSGATAVTRLASAPVTRRTTASTSAFHRVLSADGLRFELEEAEVEEDDEQVKALLSREASAALTLLIPDSTDPYALLRELPPRVDAVEIDENYSLVLSNFPGTFQMATLTVRAVPEKGEDVLLATLPSQPHMLTRQQVWSWRPRDSLGAEQLVKGREYYLEVTSSDGMAFD 1123
BLAST of NO29G01560 vs. NCBI_GenBank
Match: EWM25479.1 (hypothetical protein Naga_100207g1 [Nannochloropsis gaditana]) HSP 1 Score: 118.2 bits (295), Expect = 1.600e-22 Identity = 74/193 (38.34%), Postives = 107/193 (55.44%), Query Frame = 0 Query: 133 CTPSTGKELREVVES-STCTVVTLMPGVTYLLS-----DFIRVSRRISIIGRPLDMPTIDAHLAYRAFTVEPGGLLDLRFVRIFRGKPIRVARSLYEIRGGALYIRRGGRAVITSCLLT-VNPILITEFLISQS-QATVRLLGGYILQEEGTLVITDVRIYVTRPGVLFREIYTVGGQVLVLGGNLVATGCTF 318 C P +G ELR++ E S C +++L+PG Y ++ D I +S R IIG P+ +PTID + R F + GG LDL+FVR +RG +A ++ +RGG + GGR + T P+ + LI+ VR+ GG + G + IT +V +PGVLFREIY VG +LV+ G V +G TF Sbjct: 152 CVPQSGMELRQMAEDPSRCAIISLLPGKIYNVALPDSDDDITISTRKVIIGNPISLPTIDGADSKRIFHIVAGGNLDLQFVRTYRGGGELIA-TIPVLRGGTALVELGGRFSAFGVIFTNAPPVGMPAILIAPDVSRAVRVFGGQVFVTGGIVTITLSHFWVLQPGVLFREIYVVGADLLVVAGVAVLSGVTF 343
BLAST of NO29G01560 vs. NCBI_GenBank
Match: EWM27664.1 (hypothetical protein Naga_100125g7 [Nannochloropsis gaditana]) HSP 1 Score: 90.9 bits (224), Expect = 2.700e-14 Identity = 58/186 (31.18%), Postives = 84/186 (45.16%), Query Frame = 0 Query: 133 CTPSTGKELREVVESSTCTVVTLMPGVTYLLSDFIRVSRRISIIGRPLDMPTIDAHLAYRAFTVEPGGLLDLRFVRIFRGKPIRVARSLYEIRGGALYIRRGGRAVITSCLLTVNPILITEFLISQSQATVRLLGGYILQEEGTLVITDVRIYVTRPGVLFREIYTVGGQVLVLGGNLVATGCTFL 319 C + L E V S+ C VV L+ G Y L + V + ++IG P D P I+A A RAF V G D+R + + G + + GGA+Y+ G R CL T+ P + E I + A + GG IL E G + + + PG + +GG VL+L G T F+ Sbjct: 178 CLAHDTRRLMEAVNSTACDVVVLVAGHVYNLDRMMHVYKPTTVIGNPADRPVINAAEAERAFLVHSGATFDVRHILFYEGDGDLIRNEIRTRFGGAIYMSIGTRLFAFDCLFTIQP--VRESFI--NSAPEFIFGGDILMEGGVMTLVGCSFFAVVPGFINSVSTELGGAVLILSGAATLTLVNFM 359
BLAST of NO29G01560 vs. NCBI_GenBank
Match: EWM26475.1 (hypothetical protein Naga_100045g21 [Nannochloropsis gaditana]) HSP 1 Score: 87.8 bits (216), Expect = 2.300e-13 Identity = 61/206 (29.61%), Postives = 103/206 (50.00%), Query Frame = 0 Query: 133 CTPSTGKELREVVESSTCTVVTLM--PGVTYLLSDF--IRVSRRISIIGRPLDMPTIDAHLAYRAFTVEPGGLLDLRFVRIFRGKPI-----------RVARSLYEIRGGALYIRRGGR-----AVITSCLLTVNPILITEFLISQSQAT-VRLLGGYILQEEGTLVITDVRIYVTRPGVLFREIYTVGGQVLVLGGNLVATGCTF 318 C P EL+ VE + C +V L + Y+L D I V R + ++G P +PTIDA + RAFT+ GG L+L++VR+ +G + ++ ++EI+GG++ + G VI ++T N + + + Q T R+ GG++ GT+ + + + + F + +G +LVL GN+ TGCTF Sbjct: 204 CWPRNIVELQIAVEEADCPLVVLTNPNPMAYMLMDMNEIMVMRHVRVLGHPALLPTIDAMMGMRAFTIMEGGFLELQYVRVRQGMGMYRDRYGLEGRDDISSKVFEIKGGSVMLEEGAEGANFVGVIFLAVMT-NQEMTEQAIQDQIDMTGWRIYGGHVYVTAGTVRFFNCHFWDSMILMPFTDQVAIGADILVLAGNVFVTGCTF 408
BLAST of NO29G01560 vs. NCBI_GenBank
Match: XP_005854372.1 (hypothetical protein NGA_0163600, partial [Nannochloropsis gaditana CCMP526] >EKU21987.1 hypothetical protein NGA_0163600, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 84.0 bits (206), Expect = 3.300e-12 Identity = 62/226 (27.43%), Postives = 102/226 (45.13%), Query Frame = 0 Query: 128 NMLPGCTPSTGKELREVVESSTCTV--VTLMPGVTYLLSDFIRVSRRISIIGRPLDMPTIDA---HLAYRAFTVEPGGLLDLRFVRIFRG--------------------------KPIRVARSLYEIRGGALYIRRGGRAVITSCLLTVNPILITEFLISQSQATV-----RLLGGYILQEEGTLVITDVRIYVTRPGVLFREIYTVGGQVLVLGGNLVATGCTF 318 + + C P T EL E V+ C++ +T YL++ I V R I I+G P+ +P IDA ++A RAF V GG LDL+++R+ G + + V + E RGG++ I +G ++ ++ E + QAT R GG+I G++ T+ + T + + +++GG +L+L G L T CTF Sbjct: 134 DQMDACYPQTADELVEAVQELDCSLLFLTNFDPQAYLITQHIMVDRPIRIVGHPVFLPVIDASTLNMAPRAFRVVEGGFLDLQYIRVRAGVGETKERPVSSNQTQAESAFGETSGTQQVGVTGKILETRGGSVAIEQGASGANFEGVIFLSVANSWESVQEAIQATYTGMGGRTYGGHIFIAGGSVKFTNCHFWTTAILLPLTDQFSLGGDILMLAGTLTVTACTF 359
BLAST of NO29G01560 vs. NCBI_GenBank
Match: EWM26075.1 (hypothetical protein Naga_100278g5 [Nannochloropsis gaditana]) HSP 1 Score: 83.6 bits (205), Expect = 4.300e-12 Identity = 62/224 (27.68%), Postives = 101/224 (45.09%), Query Frame = 0 Query: 130 LPGCTPSTGKELREVVESSTCTVVTLMPG--VTYLLSDFIRVSRRISIIGRPLDMPTIDA---HLAYRAFTVEPGGLLDLRFVRIFRG--------------------------KPIRVARSLYEIRGGALYIRRGGRAVITSCLLTVNPILITEFLISQSQATV-----RLLGGYILQEEGTLVITDVRIYVTRPGVLFREIYTVGGQVLVLGGNLVATGCTF 318 + C P T EL E V+ C+++ L YL++ I V R I I+G P+ +P IDA ++A RAF V GG LDL+++R+ G + + V + E RGG++ I +G ++ ++ E + QAT R GG+I G++ T+ + T + + +++GG +L+L G L T CTF Sbjct: 1 MDACYPQTADELVEAVQELDCSLLFLTNSDPQAYLITQHIMVDRPIRIVGHPVFLPVIDASTLNMAPRAFRVVEGGFLDLQYIRVRAGVGETKERPVSSNQTQAESAFGETSGTQQVGVTGKILETRGGSVAIEQGASGANFEGVIFLSVANSWESVQEAIQATYTGMGGRTYGGHIFIAGGSVKFTNCHFWTTAILLPLTDQFSLGGDILMLAGTLTVTACTF 224
BLAST of NO29G01560 vs. NCBI_GenBank
Match: EWM25323.1 (hypothetical protein Naga_100281g10 [Nannochloropsis gaditana]) HSP 1 Score: 81.3 bits (199), Expect = 2.100e-11 Identity = 53/150 (35.33%), Postives = 79/150 (52.67%), Query Frame = 0 Query: 133 CTPSTGKELREVVES-STCTVVTLMPGVT--YLLSDFIRVSRRISIIGRPLDMPTIDAHL-AYRAFTVEPGGLLDLRFVRIFRGKPIRVARSLYEIRGGALYIRRGGRAVITSCLLTVNPILITEFLISQSQ--ATVRLLGGYILQEEGT 277 C P G+EL+ + ES S+C+V+ L G + Y L + V+ R ++G P+D+P I YR F V+PGG LD+RFV +FR P +V +L I G + GG T+C+ F+ S A R++GG++L GT Sbjct: 161 CYPQNGEELKGMTESGSSCSVIILKKGSSDKYTLPSTVIVTSRKIVLGHPIDLPQIHPDKEVYRLFEVKPGGSLDIRFVSLFRPSPRKVDENLSVIVAGVALVELGGYMRGTACIFRQPAQTFEAFVKSLETPFARKRIVGGFVLVLGGT 310
BLAST of NO29G01560 vs. NCBI_GenBank
Match: XP_005854415.1 (hypothetical protein NGA_0231400, partial [Nannochloropsis gaditana CCMP526] >EKU21941.1 hypothetical protein NGA_0231400, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 80.1 bits (196), Expect = 4.800e-11 Identity = 53/150 (35.33%), Postives = 80/150 (53.33%), Query Frame = 0 Query: 133 CTPSTGKELREVVES-STCTVVTLMPGVT--YLLSDFIRVSRRISIIGRPLDMPTIDA-HLAYRAFTVEPGGLLDLRFVRIFRGKPIRVARSLYEIRGGALYIRRGGRAVITSCLLTVNPILITEFLISQSQ--ATVRLLGGYILQEEGT 277 C P G+EL+ + ES S+C+V+ L G + Y L + V+ R ++G P+D+P I + YR F V+PGG LD+RFV +FR P +V +L I G + GG T+C+ F+ S A R++GG++L GT Sbjct: 161 CYPQNGEELKGMTESGSSCSVIILKKGSSDKYTLPSTVIVTSRKIVLGHPIDLPQIHPDNGVYRLFEVKPGGSLDIRFVSLFRPSPRKVDDNLSVIVAGVALVELGGYMRGTACIFRQPAQTFEGFVKSLETPFARKRIVGGFVLVLGGT 310
BLAST of NO29G01560 vs. NCBI_GenBank
Match: XP_005853421.1 (hypothetical protein NGA_0438900, partial [Nannochloropsis gaditana CCMP526] >EKU22940.1 hypothetical protein NGA_0438900, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 76.6 bits (187), Expect = 5.300e-10 Identity = 61/190 (32.11%), Postives = 87/190 (45.79%), Query Frame = 0 Query: 133 CTPSTGKELREVVES-STCTVVTLMPGVT--YLLSDFIRVSRRISIIGRPLDMPTIDAHL-AYRAFTVEPGGLLDLRFVRIFRGKPIRVARSLYEIRGGALYIRRGGRAVITSCLLTVNPILITEFL--ISQSQATVRLLGGYILQEEGTLVITDVRIYVTRP-GVLFREIYTVGGQVLVLGGNLVATGC 316 C P TG EL+ +VES S+C+VV L G + YLL + V+ + I+G P+D P I YR F V G +D+RFV +FR V + I G + +R GG + + F+ + A R++GG++L G +I P G + VG LVL G V GC Sbjct: 163 CYPETGPELKAMVESGSSCSVVILKKGSSYIYLLPSTVMVTSSVIILGHPIDPPQIHPEKGVYRLFDVAAGSHIDIRFVSLFRPALRNVGGNRSLIVAGCVLVRTGGYFRGSGVIFRQQAQTFEGFVKGLMDPLAPKRIVGGFVLVAGGAFFCYGCQIIRWAPYGAPNINLVEVGRDYLVLAGTSVCIGC 352 The following BLAST results are available for this feature:
BLAST of NO29G01560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 14
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO29G01560 ID=NO29G01560|Name=NO29G01560|organism=Nannochloropsis oceanica|type=gene|length=5686bpback to top protein sequence of NO29G01560.1 >NO29G01560.1-protein ID=NO29G01560.1-protein|Name=NO29G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1113bpback to top Synonyms
Publications
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