NO29G01560, NO29G01560 (gene) Nannochloropsis oceanica

Overview
NameNO29G01560
Unique NameNO29G01560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5686
Alignment locationchr29:487514..493199 +

Link to JBrowse

Properties
Property NameValue
DescriptionPectin lyase fold/virulence factor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:487514..493199 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence
Vocabulary: Molecular Function
TermDefinition
GO:0016829lyase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO29G01560 vs. NCBI_GenBank
Match: EWM26817.1 (Pectin lyase fold/virulence factor [Nannochloropsis gaditana])

HSP 1 Score: 192.2 bits (487), Expect = 8.600e-45
Identity = 98/191 (51.31%), Postives = 129/191 (67.54%), Query Frame = 0
Query:  132 GCTPSTGKELREVVESSTCTVVTLMPGVTYLLSDFIRVSRRISIIGRPLDMPTIDAHLAYRAFTVEPGGLLDLRFVRIFRGKPIRVARSLY-EIRGGALYIRRGGRAVITSCLLTVNPILITEFLI-SQSQATVRLLGGYILQEEGTLVITDVRIYVTRPGVLFREIYTVGGQVLVLGGNLVATGCTFLGN 321
            GCTP TG +LR +VE+ +C V+TL PGV Y+L + I V R + IIGRPL +P IDAHL  RAF+VE  G LDLRFV+++RG P+ V   +Y E+RGG  +IR GG  V T CL+ V+   + + L+ S  + T RL GG++L E GTL + D  + + RPGVL RE+YTVGG +LV+ GNL  TG T   N
Sbjct:  187 GCTPDTGVQLRSLVETGSCPVITLTPGVRYVLDEEIHVRRAVVIIGRPLTLPVIDAHLIARAFSVEAKGRLDLRFVKVWRGVPMAVVDEVYLELRGGVAWIREGGEGVFTGCLMLVHDDEVGDVLLASDLRVTARLYGGFLLLEAGTLRVRDCHMLLQRPGVLLREVYTVGGYILVVSGNLFMTGSTMTAN 377          
BLAST of NO29G01560 vs. NCBI_GenBank
Match: EWM22289.1 (Pectin lyase fold/virulence factor [Nannochloropsis gaditana])

HSP 1 Score: 168.3 bits (425), Expect = 1.300e-37
Identity = 481/1133 (42.45%), Postives = 605/1133 (53.40%), Query Frame = 0
Query:  132 GCTPSTGKELREVVESSTCTVVTLMPGVTYLLSDFIRVSRRISIIGRPLDMPTIDAHLAYRAFTVEPGGLLDLRFVRIFRGKPIRVA-RSLYEIRGGALYIRRGGRAVITSCLLTVNPILITEFL-ISQSQATVRLLGGYILQEEGTLVITDVRIYVTRPGVLFREIYTVGGQVLVLGGNLVATGCTFLGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYQGGTYFLFHGNRQLAQIWIAGHDVVLKS---NKT--FSGALASRDGVTYIPKRNKTMR-VSMK--------NVAFKKYNEMEVERVFGLKTHHRH-------LASLRSNVDKLLVQGAQQRFLEESKAVST-----PLVL------------------------------------ATSATIA---------TQMGADVEANIAAVE--------DGMLRMPVLGEVY----IPPIP-QDVRTDNVYLAGALDECSLCDIHPGRTFDNVDGPGA-AACAIADSCDSVLGADGSLFP---------GSTKAEQ----MWNPPAGNDQANSSIAVIELQAWYTP----------TSPSASRIDPASVAIAVEQASMALGLPQRYHLKVQPDTVNPLAFHNDEYVIAAQTDSKENGGLNAGEYGTTLVDEEAELLEALLKEGERKMMYEECTLGKTFKFYLVSDWRNVTDAHMKAFKRQEGAKALGLALQD---------AQPVDER--------VQICEARVKTAVPLFVPG------------------------RKVSLFKDYAANDG---------------KTSSLFALGQQDMLPLAVAELTDV-----ATGNRVDDVQIGETYTLDLQHFPPSL---PVTVKLVPRNGLAVMILGIFSSQPTNDVAQAWNWT------VSKAVAPGAYYLEVVGKKAGVFD 1085
            GCTP   +ELR +++ +TC  +TL+P   Y +++ + + RR++++GRPL +P IDAH   RAF VE GG LD+RFV I +GK + V    LY +RG   YIRRGG A+ T C  + N      FL I+  Q  V++ GG I+ E GTL +TD  ++  R G+ FREI  VGG+ LVLGGN+  TGC F+          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        +   +R L  I++AG++V L +   N T  F+    ++ G T   +     R +S +        +    +  E   E   GL    R        LA+   +V+         RFL  S    T     P V                                        AT+A         T  G   +  +A+V         DG L        Y    IP +  +  +TD +Y+A  +D C +CD+ PG TFDNVDGPGA +AC + ++C +   +  +L P         G    EQ    MW        ANS++ ++E+++ +TP           SP+ + ++   VA A+ +A ++LGL +R+HL+V+P   +     N +  +  + D++        +YG+    + AE+              E C   ++FK YLVSDW+NVTD   +  K   G KAL LALQ          A   D            +CE  V     L+VP                            S F    + DG               +  +L +      L L + + TD          RVD V+I E Y+L L +FP +     +TV+ VP  G  V++  + S        Q W+W         + V    YYLEV       FD
Sbjct:    8 GCTPKNAEELRYMIDHTTCPRLTLVPATNYSITEQLVIRRRVTLVGRPLGLPIIDAHNTTRAFLVEAGGFLDVRFVEIVKGKFVEVVPLVLYRLRGPTCYIRRGGVALFTGCRFSANWRNAALFLGITPPQTNVQVFGGGIVAESGTLRVTDCHVFRPRIGIAFREIQFVGGEFLVLGGNMYLTGCIFVNMAIFASSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPATPVAFRSRGLVAIYVAGNNVFLSTQLGNATVLFNVLTVNKHGQTDWSRNIFVARKISWRFTDVGPNPDDFVGRRLEAPGENKAGLDPAKRSGLGKPATLAARGEDVEVRQTHPTVPRFLTGSLGSETSFDVKPTVTDILNKYLPVEDVESIAEDTTGEEGHDRVEGHGNQNDGPEATLAKGGPETSPNTSQGRVEDNAVASVTGPKTNYSGDGDLGNITHNAFYAFAEIPGLKVERTKTDKIYVAAPMDVCGVCDVTPGNTFDNVDGPGALSACGMQNTCATSDASTLALPPGGEGDGNGAGQAGGEQPGSGMWVTSREEKSANSTVQLLEIRSTFTPFAAPPLSSSGASPAVAGVNKIEVAAALGEAIVSLGLSERWHLRVEPSWESS---KNVDPYLRLEGDAEMEESDATFDYGSI---DPAEVAN-----------QEACGRKESFKAYLVSDWKNVTDEISRKLKTSTGTKALTLALQKEVEHTAAVAANATDGENDGGMPAPPSVCELVVYRTTSLYVPSTTFAGSGATAVTRLASAPVTRRTTASTSAFHRVLSADGLRFELEEAEVEEDDEQVKALLSREASAALTLLIPDSTDPYALLRELPPRVDAVEIDENYSLVLSNFPGTFQMATLTVRAVPEKGEDVLLATLPSQPHMLTRQQVWSWRPRDSLGAEQLVKGREYYLEVTSSDGMAFD 1123          
BLAST of NO29G01560 vs. NCBI_GenBank
Match: EWM25479.1 (hypothetical protein Naga_100207g1 [Nannochloropsis gaditana])

HSP 1 Score: 118.2 bits (295), Expect = 1.600e-22
Identity = 74/193 (38.34%), Postives = 107/193 (55.44%), Query Frame = 0
Query:  133 CTPSTGKELREVVES-STCTVVTLMPGVTYLLS-----DFIRVSRRISIIGRPLDMPTIDAHLAYRAFTVEPGGLLDLRFVRIFRGKPIRVARSLYEIRGGALYIRRGGRAVITSCLLT-VNPILITEFLISQS-QATVRLLGGYILQEEGTLVITDVRIYVTRPGVLFREIYTVGGQVLVLGGNLVATGCTF 318
            C P +G ELR++ E  S C +++L+PG  Y ++     D I +S R  IIG P+ +PTID   + R F +  GG LDL+FVR +RG    +A ++  +RGG   +  GGR      + T   P+ +   LI+      VR+ GG +    G + IT    +V +PGVLFREIY VG  +LV+ G  V +G TF
Sbjct:  152 CVPQSGMELRQMAEDPSRCAIISLLPGKIYNVALPDSDDDITISTRKVIIGNPISLPTIDGADSKRIFHIVAGGNLDLQFVRTYRGGGELIA-TIPVLRGGTALVELGGRFSAFGVIFTNAPPVGMPAILIAPDVSRAVRVFGGQVFVTGGIVTITLSHFWVLQPGVLFREIYVVGADLLVVAGVAVLSGVTF 343          
BLAST of NO29G01560 vs. NCBI_GenBank
Match: EWM27664.1 (hypothetical protein Naga_100125g7 [Nannochloropsis gaditana])

HSP 1 Score: 90.9 bits (224), Expect = 2.700e-14
Identity = 58/186 (31.18%), Postives = 84/186 (45.16%), Query Frame = 0
Query:  133 CTPSTGKELREVVESSTCTVVTLMPGVTYLLSDFIRVSRRISIIGRPLDMPTIDAHLAYRAFTVEPGGLLDLRFVRIFRGKPIRVARSLYEIRGGALYIRRGGRAVITSCLLTVNPILITEFLISQSQATVRLLGGYILQEEGTLVITDVRIYVTRPGVLFREIYTVGGQVLVLGGNLVATGCTFL 319
            C     + L E V S+ C VV L+ G  Y L   + V +  ++IG P D P I+A  A RAF V  G   D+R +  + G    +   +    GGA+Y+  G R     CL T+ P  + E  I  + A   + GG IL E G + +     +   PG +      +GG VL+L G    T   F+
Sbjct:  178 CLAHDTRRLMEAVNSTACDVVVLVAGHVYNLDRMMHVYKPTTVIGNPADRPVINAAEAERAFLVHSGATFDVRHILFYEGDGDLIRNEIRTRFGGAIYMSIGTRLFAFDCLFTIQP--VRESFI--NSAPEFIFGGDILMEGGVMTLVGCSFFAVVPGFINSVSTELGGAVLILSGAATLTLVNFM 359          
BLAST of NO29G01560 vs. NCBI_GenBank
Match: EWM26475.1 (hypothetical protein Naga_100045g21 [Nannochloropsis gaditana])

HSP 1 Score: 87.8 bits (216), Expect = 2.300e-13
Identity = 61/206 (29.61%), Postives = 103/206 (50.00%), Query Frame = 0
Query:  133 CTPSTGKELREVVESSTCTVVTLM--PGVTYLLSDF--IRVSRRISIIGRPLDMPTIDAHLAYRAFTVEPGGLLDLRFVRIFRGKPI-----------RVARSLYEIRGGALYIRRGGR-----AVITSCLLTVNPILITEFLISQSQAT-VRLLGGYILQEEGTLVITDVRIYVTRPGVLFREIYTVGGQVLVLGGNLVATGCTF 318
            C P    EL+  VE + C +V L     + Y+L D   I V R + ++G P  +PTIDA +  RAFT+  GG L+L++VR+ +G  +            ++  ++EI+GG++ +  G        VI   ++T N  +  + +  Q   T  R+ GG++    GT+   +   + +   + F +   +G  +LVL GN+  TGCTF
Sbjct:  204 CWPRNIVELQIAVEEADCPLVVLTNPNPMAYMLMDMNEIMVMRHVRVLGHPALLPTIDAMMGMRAFTIMEGGFLELQYVRVRQGMGMYRDRYGLEGRDDISSKVFEIKGGSVMLEEGAEGANFVGVIFLAVMT-NQEMTEQAIQDQIDMTGWRIYGGHVYVTAGTVRFFNCHFWDSMILMPFTDQVAIGADILVLAGNVFVTGCTF 408          
BLAST of NO29G01560 vs. NCBI_GenBank
Match: XP_005854372.1 (hypothetical protein NGA_0163600, partial [Nannochloropsis gaditana CCMP526] >EKU21987.1 hypothetical protein NGA_0163600, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 84.0 bits (206), Expect = 3.300e-12
Identity = 62/226 (27.43%), Postives = 102/226 (45.13%), Query Frame = 0
Query:  128 NMLPGCTPSTGKELREVVESSTCTV--VTLMPGVTYLLSDFIRVSRRISIIGRPLDMPTIDA---HLAYRAFTVEPGGLLDLRFVRIFRG--------------------------KPIRVARSLYEIRGGALYIRRGGRAVITSCLLTVNPILITEFLISQSQATV-----RLLGGYILQEEGTLVITDVRIYVTRPGVLFREIYTVGGQVLVLGGNLVATGCTF 318
            + +  C P T  EL E V+   C++  +T      YL++  I V R I I+G P+ +P IDA   ++A RAF V  GG LDL+++R+  G                          + + V   + E RGG++ I +G        ++ ++     E +    QAT      R  GG+I    G++  T+   + T   +   + +++GG +L+L G L  T CTF
Sbjct:  134 DQMDACYPQTADELVEAVQELDCSLLFLTNFDPQAYLITQHIMVDRPIRIVGHPVFLPVIDASTLNMAPRAFRVVEGGFLDLQYIRVRAGVGETKERPVSSNQTQAESAFGETSGTQQVGVTGKILETRGGSVAIEQGASGANFEGVIFLSVANSWESVQEAIQATYTGMGGRTYGGHIFIAGGSVKFTNCHFWTTAILLPLTDQFSLGGDILMLAGTLTVTACTF 359          
BLAST of NO29G01560 vs. NCBI_GenBank
Match: EWM26075.1 (hypothetical protein Naga_100278g5 [Nannochloropsis gaditana])

HSP 1 Score: 83.6 bits (205), Expect = 4.300e-12
Identity = 62/224 (27.68%), Postives = 101/224 (45.09%), Query Frame = 0
Query:  130 LPGCTPSTGKELREVVESSTCTVVTLMPG--VTYLLSDFIRVSRRISIIGRPLDMPTIDA---HLAYRAFTVEPGGLLDLRFVRIFRG--------------------------KPIRVARSLYEIRGGALYIRRGGRAVITSCLLTVNPILITEFLISQSQATV-----RLLGGYILQEEGTLVITDVRIYVTRPGVLFREIYTVGGQVLVLGGNLVATGCTF 318
            +  C P T  EL E V+   C+++ L       YL++  I V R I I+G P+ +P IDA   ++A RAF V  GG LDL+++R+  G                          + + V   + E RGG++ I +G        ++ ++     E +    QAT      R  GG+I    G++  T+   + T   +   + +++GG +L+L G L  T CTF
Sbjct:    1 MDACYPQTADELVEAVQELDCSLLFLTNSDPQAYLITQHIMVDRPIRIVGHPVFLPVIDASTLNMAPRAFRVVEGGFLDLQYIRVRAGVGETKERPVSSNQTQAESAFGETSGTQQVGVTGKILETRGGSVAIEQGASGANFEGVIFLSVANSWESVQEAIQATYTGMGGRTYGGHIFIAGGSVKFTNCHFWTTAILLPLTDQFSLGGDILMLAGTLTVTACTF 224          
BLAST of NO29G01560 vs. NCBI_GenBank
Match: EWM25323.1 (hypothetical protein Naga_100281g10 [Nannochloropsis gaditana])

HSP 1 Score: 81.3 bits (199), Expect = 2.100e-11
Identity = 53/150 (35.33%), Postives = 79/150 (52.67%), Query Frame = 0
Query:  133 CTPSTGKELREVVES-STCTVVTLMPGVT--YLLSDFIRVSRRISIIGRPLDMPTIDAHL-AYRAFTVEPGGLLDLRFVRIFRGKPIRVARSLYEIRGGALYIRRGGRAVITSCLLTVNPILITEFLISQSQ--ATVRLLGGYILQEEGT 277
            C P  G+EL+ + ES S+C+V+ L  G +  Y L   + V+ R  ++G P+D+P I      YR F V+PGG LD+RFV +FR  P +V  +L  I  G   +  GG    T+C+          F+ S     A  R++GG++L   GT
Sbjct:  161 CYPQNGEELKGMTESGSSCSVIILKKGSSDKYTLPSTVIVTSRKIVLGHPIDLPQIHPDKEVYRLFEVKPGGSLDIRFVSLFRPSPRKVDENLSVIVAGVALVELGGYMRGTACIFRQPAQTFEAFVKSLETPFARKRIVGGFVLVLGGT 310          
BLAST of NO29G01560 vs. NCBI_GenBank
Match: XP_005854415.1 (hypothetical protein NGA_0231400, partial [Nannochloropsis gaditana CCMP526] >EKU21941.1 hypothetical protein NGA_0231400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 80.1 bits (196), Expect = 4.800e-11
Identity = 53/150 (35.33%), Postives = 80/150 (53.33%), Query Frame = 0
Query:  133 CTPSTGKELREVVES-STCTVVTLMPGVT--YLLSDFIRVSRRISIIGRPLDMPTIDA-HLAYRAFTVEPGGLLDLRFVRIFRGKPIRVARSLYEIRGGALYIRRGGRAVITSCLLTVNPILITEFLISQSQ--ATVRLLGGYILQEEGT 277
            C P  G+EL+ + ES S+C+V+ L  G +  Y L   + V+ R  ++G P+D+P I   +  YR F V+PGG LD+RFV +FR  P +V  +L  I  G   +  GG    T+C+          F+ S     A  R++GG++L   GT
Sbjct:  161 CYPQNGEELKGMTESGSSCSVIILKKGSSDKYTLPSTVIVTSRKIVLGHPIDLPQIHPDNGVYRLFEVKPGGSLDIRFVSLFRPSPRKVDDNLSVIVAGVALVELGGYMRGTACIFRQPAQTFEGFVKSLETPFARKRIVGGFVLVLGGT 310          
BLAST of NO29G01560 vs. NCBI_GenBank
Match: XP_005853421.1 (hypothetical protein NGA_0438900, partial [Nannochloropsis gaditana CCMP526] >EKU22940.1 hypothetical protein NGA_0438900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 76.6 bits (187), Expect = 5.300e-10
Identity = 61/190 (32.11%), Postives = 87/190 (45.79%), Query Frame = 0
Query:  133 CTPSTGKELREVVES-STCTVVTLMPGVT--YLLSDFIRVSRRISIIGRPLDMPTIDAHL-AYRAFTVEPGGLLDLRFVRIFRGKPIRVARSLYEIRGGALYIRRGGRAVITSCLLTVNPILITEFL--ISQSQATVRLLGGYILQEEGTLVITDVRIYVTRP-GVLFREIYTVGGQVLVLGGNLVATGC 316
            C P TG EL+ +VES S+C+VV L  G +  YLL   + V+  + I+G P+D P I      YR F V  G  +D+RFV +FR     V  +   I  G + +R GG    +  +          F+  +    A  R++GG++L   G       +I    P G     +  VG   LVL G  V  GC
Sbjct:  163 CYPETGPELKAMVESGSSCSVVILKKGSSYIYLLPSTVMVTSSVIILGHPIDPPQIHPEKGVYRLFDVAAGSHIDIRFVSLFRPALRNVGGNRSLIVAGCVLVRTGGYFRGSGVIFRQQAQTFEGFVKGLMDPLAPKRIVGGFVLVAGGAFFCYGCQIIRWAPYGAPNINLVEVGRDYLVLAGTSVCIGC 352          
The following BLAST results are available for this feature:
BLAST of NO29G01560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 14
Match NameE-valueIdentityDescription
EWM26817.18.600e-4551.31Pectin lyase fold/virulence factor [Nannochloropsi... [more]
EWM22289.11.300e-3742.45Pectin lyase fold/virulence factor [Nannochloropsi... [more]
EWM25479.11.600e-2238.34hypothetical protein Naga_100207g1 [Nannochloropsi... [more]
EWM27664.12.700e-1431.18hypothetical protein Naga_100125g7 [Nannochloropsi... [more]
EWM26475.12.300e-1329.61hypothetical protein Naga_100045g21 [Nannochlorops... [more]
XP_005854372.13.300e-1227.43hypothetical protein NGA_0163600, partial [Nannoch... [more]
EWM26075.14.300e-1227.68hypothetical protein Naga_100278g5 [Nannochloropsi... [more]
EWM25323.12.100e-1135.33hypothetical protein Naga_100281g10 [Nannochlorops... [more]
XP_005854415.14.800e-1135.33hypothetical protein NGA_0231400, partial [Nannoch... [more]
XP_005853421.15.300e-1032.11hypothetical protein NGA_0438900, partial [Nannoch... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL062nonsL062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR079ngnoR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01560.1NO29G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|655451gene_8334Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01560.1NO29G01560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01560 ID=NO29G01560|Name=NO29G01560|organism=Nannochloropsis oceanica|type=gene|length=5686bp
AATAGTACTTTGCTTTTGTCAATGCAACAGCAAAACAAATTGCGCCGCTG
GGCCTTGGCTCTGGGAGCCTTCGTAACGATAGGAGTTGTAACAGCGCTGG
CGTTGCAGTTTGGAGGGAAGCGGCGCTCTCCTACAGGCATCCAGAAGCCT
CAGTCGCAGgtaagggttaaagagagggtatatggggagaagtagtagaa
ggagatgaatcgcgagccagctatctaataaaggacctcttacgtagGAA
ACGCCCACCGAGTGGACCGCCCATGCTATGGACGACATTGTCTCCTCAAT
CATCAAGGCCGCGACGGGCGACAAGGCAGGTAATGAATACGGAGAAGAAG
ATCAATCGGACGAGACTGACGACACACCGGCCGGAGATCCCCCGCCACCT
CCTTTTCCATCCGGAGTGATCGAGTCGAATGAAACCTCGACAACGCTGGG
GGCGGCCGCGTTTGCACCTTTCCTTGAATCACGATTAGGCAATATGCTGC
CTGGGTGTACGCCCAGCACCGGAAAAGAGCTTCGAGAGGTCGTTGAAAgt
aagtggacaggttaaatgtgtgtggtgtgatgcgttgttgtcaatgatgg
aatgtctgcgtgaacgcaatcgaggatgggccagcacaggtaccataaat
tggattgtgtgtgcatgttgcacgtgtacgagccaaaattagctttttgc
atacgttttcgttcaggaattgtcatttatcccagacttgtacaataaat
ctcagagcgcacggcaaaaagatgacatgtttgtacaaaaggttcagtgg
agctacaaatccacaggcccaactctcatttgtcccctcccaaaatactc
acttatgtctcgccactcaaaacgctgctcaccccgtttatacctttagG
CTCCACCTGTACGGTCGTCACCCTGATGCCTGGTGTAACCTATCTTTTGT
CGGACTTTATACGCGTGAGCCGACGCATAAGTATTATTGGTCGACCACTT
GATATGCCAACCATTGACGCCCACCTTGCTTATCGTGCCTTCACTGTAGA
GCCGGGTGGACTCTTGGATCTGCGCTTCGTTCGCATTTTCCGAGGGAAGC
CCATCCGAGTTGCCAGATCGCTTTACGAAATCCGAGGAGGAGCCCTCTAT
ATTAGGCGTGGGGGTCGTGCCGTAATCACTAGTTGCCTATTAACTGTGAA
TCCCATCTTGATCACGGAATTCTTGATAAGTCAGAGCCAGGCCACGGTAC
GGCTTTTGGGAGGCTACATTCTGCAAGAAGAAGGGACACTCGTCATAACG
GATGTGCGGATCTATGTCACGCGTCCCGGTGTACTATTTCGAGAGATTTA
CACTGTGGGAGGGCAGGTGTTGGTGCTAGGTGGCAATCTAGTCGCAACGG
GCTGCACCTTTTTGGGAAACTTCCTATTTATCAATGTCTTTGGGGTTGGA
GACGCTCTTGCAGTGTTTGGAGGGACAGCCATATTTACAGGCTGTTCTTT
TACTTTAAATGTTGCTTTCATTGCGgtgagtgaggatgtgggttggagag
aaggaggcaaatataagggatattataaatgcgacgttcaatcttcaagc
acttaccatgtgtaagtatttgtccgtgcaccctcacgacatataaggct
tatcttcccccctcgtctttcctagctttcttaattattaatccttacgt
tcaataaatacatcttattgactatgagcagcgtctttccgccttcagtc
taccactgctgcggcctactttcttccccaacccaactgggtctttaaat
tactcacaccattccttccttatgcctcttttcccttttcgccagTCCCA
GGGCACAGGCTTGCTCCTTTTCATGGGAGGTGGCGTCACGGTTTTCACAG
GCTGTCAGgcaagaaaatggggaaaggcagaaaggatggagagaggctga
cagagagggaggatacggtttgccaaggtctcctgacgatgcttcatctc
ttgcattaacattcttgtcgctcacttagtcctgactgccgccgtcctat
ttctccacctccctcactctcttatctgcctccttcagTCAATCATCAAT
ATCGGCGCAAGGTCGTTCTTTGGGGCCGGTGGGGCGATCTGGAATGGCGC
AGGCGTGACGATCATGACAGgcaaggagggacggagagagaaaggggtgg
atggagtggtcctcttattccagatatcctcgttattcaatatttatttc
tttccctacaacagGCATGTCGATTCATGCGAACCTGGCCTTGCTCTTTG
GTGCAGGCGTGGGATTTGTGCTGGGACAAGGGGCAGGTATATTTATCAAA
ACGgtatgtcgttctatttcttaatgtatctgtcacgctctcactgcatt
tcgatatgatttcttcccctttcaatttgcactccttcatccatttttat
acaatagGGCGTGTCACAAACAGGCTACGTGGCCATCAATGCGGAGGCCT
GCCTCGGCTTTGCTTTATTTGTAGGCTCGGGCATCGTGGTCCAGTCTGAG
ACGGTTTGGGCGCGTGTTGCGGCAATTACGGCATACTACGGTGGAGGAGG
TTCAGTCTACATCCATGCAGGCGCTGgtatgtaatgtgaggaggaagaga
ggggggagaaaaagagaaaggaagatgacggagagatgcgaatgacactg
gagtttcgcttctctccgaagaaactatggagtttattcattcccccctc
gctcattcctcccgaccctgactcctgttttcccgttcccttactctctc
tcacagTGTCGTTCATTAATACGTTTGGCCTTATCATCAATGCCATCGCC
TTCATTGCTGCCAGCGGTGGGCATCTCTTTCTCCACGCCGGCTGGTTCAC
ATCGGTTAATGTCTACTTTTACAAATTTGAAGCCATCACTGCCCTTTACG
GCCAAGGAACAGAAATTCTGATCCTGGCAGGCGGCGCAGCGATGATCAAC
ACGGGgtaagttggagggaggggaagaaggagcgaggcaagaacgggaaa
gattagatggaagattcgcggaaagcacacatacattatgttggggatga
gatgacatgtgcgtgccaaaaagctagcctttcgctctgaaaggcaatga
acgtgcttcttgtgcgtcccgcctttcctccttacctccttccccaaatg
ctttcttcctccccctccccagcattaaatggttccttcgtggacgctgc
ccaaaatctcaatagtacatttcaatgacgaccctccctccctcaccctc
ttattctctctctttctccctcttcaatctactcacctcctttttctcct
tttctccgcagGTACCAGGGTGGGACCTACTTTCTCTTCCACGGCAATCG
CCAGCTGGCCCAGATCTGGATCGCGGGTCATGACGTCGTGCTCAAGAGTA
ACAAAACTTTTAGCGGGGCGTTGGCCTCGAGGGACGGTGTGACTTATATC
CCCAAGCGCAATAAAACCATGCGAGTGAGCATGAAGAACGTCGCATTCAA
GAAATATAACGAGATGGAGGTCGAGCGCGTCTTCGGATTGAAAACTCATC
ATCGGCATCTTGCCTCTTTGCGGTCCAATGTGGATAAGCTTCTTGTTCAG
GGTGCGCAGCAGCGGTTCTTGGAGGAATCAAAAGCAGTGAGCACGCCACT
GGTGCTTGCCACCTCAGCTACCATCGCAACGCAAATGGGGGCTGATGTTG
AGGCCAATATTGCGGCAGTAGAGGACGGGATGCTTAGGATGCCTGTGCTG
GGTGAGGTGTACATCCCTCCTATTCCTCAGGACGTCAGAACAGACAATGT
CTACCTAGCTGGGGCCTTGGATGAGTGCTCATTGTGCGACATTCATCCTG
GACGTACTTTTGACAACGTGGACGGACCGGGCGCAGCTGCATGTGCCATT
GCTGACAGTTGTGACAGCGTGTTGGGTGCCGACGGCAGCCTGTTCCCGGG
CAGCACTAAGGCCGAGCAAATGTGGAATCCTCCAGCAGGTAACGACCAAG
CCAACTCCTCTATTGCGGTGATTGAGCTTCAAGCGTGGTACACACCTACC
TCCCCCTCGGCCTCTCGTATCGACCCGGCTAGCGTGGCTATTGCCGTGGA
GCAGGCTTCGATGGCTCTGGGGCTCCCGCAGCGATATCATTTGAAGGTAC
AGCCAGATACAGTGAACCCTCTCGCGTTCCATAATGACGAGTACGTAATC
GCCGCACAGACTGATTCGAAGGAAAACGGCGGCTTGAATGCCGGTGAGTA
CGGGACGACGCTCGTGGACGAAGAGGCTGAGCTTCTGGAGGCACTTTTGA
AGGAGGGGGAAAGAAAAATGATGTACGAAGAGTGCACGCTGGGGAAGACA
TTCAAGTTTTACCTAGTGAGCGACTGGCGGAATGTGACGGACGCGCACAT
GAAGGCATTCAAGAGGCAGGAGGGGGCAAAGGCACTGGGGCTAGCCTTGC
AGGACGCACAACCGGTGGACGAGCGCGTCCAGATCTGCGAGGCGCGTGTC
AAGACAGCGGTGCCCTTGTTTGTGCCCGGCCGTAAGGTGTCACTGTTCAA
GGACTACGCCGCAAATGACGGCAAGACCTCGTCGTTATTTGCATTGGGAC
AGCAGGATATGCTACCCTTGGCGGTGGCGGAGCTAACGGACGTGGCAACG
GGTAACCGTGTGGATGATGTACAGATAGGCGAGACCTACACTCTAGATCT
CCAGCACTTTCCTCCTTCTCTGCCTGTCACTGTGAAGCTGGTCCCGCGGA
ACGGGCTCGCCGTCATGATTTTGGGCATATTTTCTTCACAACCGACGAAC
GACGTGGCTCAGGCATGGAATTGGACGGTGAGCAAGGCCGTGGCCCCCGG
TGCTTACTACTTGGAGGTAGTGGGTAAGAAGGCTGGCGTATTCGATGGGC
CGTTGGGAGGCTTGACGGCGCTGATGGCGACGACGGATATCAGTGCGTTT
GCCTACACCCAGGCTTTTGTAGTGTTTGAATAAAGAGCAAGAGCTGGATT
AAAAGTATGCACATGTATATGTATACACATATTCATATATATGTATACAC
ATATTTATATAAATATAAATATAAAAGACGGCATTTCTAGCTGTAGATTG
GATGCATGCGCCTTGTGGGGTTGAGGAGAATCAGCGAGATAACTAAAAAG
AGAGGAAGTAGCGCGTGGGTGCGCTTGTAAGTGTGTTCAAAGCCAGAATT
TGAGTGCAACGATGCAAAAATGAAACGTGAGAAAGTGAGAGGGAAAGAAA
GATTGGAAAGTCATGTCTTCTTTTGTCGATTGTCGATGTGACACGACTGA
TCAAACAATAAATATCGAGGAATGAAAGGGTAGGGTACGCGTCTGACGCG
TGAATAGGCTATCGCGAGGAGGTATGCAGAAAAAGCACCCGGTTACAGAC
AAAGTATCAAACAATTGACTATCTCTCACCTCAGCAGACTATTCATGCGG
ATGGGCTGATGTACGGTAGTAGGTGGGCGGAGATGAAAAAAAAAAAGTAA
AAAGTGCAACGTCCAAATCAAACAAGCAAATTGAGAATTCTCTGCATTCG
AGCTTTTTTTTAAAGAACGTCTTGCTGGATGCAAATGGAAGTCAAGGACC
GTGACCTTCCTTGTCTTTTTAACTAAGATTCTCAAG
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protein sequence of NO29G01560.1

>NO29G01560.1-protein ID=NO29G01560.1-protein|Name=NO29G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1113bp
MQQQNKLRRWALALGAFVTIGVVTALALQFGGKRRSPTGIQKPQSQETPT
EWTAHAMDDIVSSIIKAATGDKAGNEYGEEDQSDETDDTPAGDPPPPPFP
SGVIESNETSTTLGAAAFAPFLESRLGNMLPGCTPSTGKELREVVESSTC
TVVTLMPGVTYLLSDFIRVSRRISIIGRPLDMPTIDAHLAYRAFTVEPGG
LLDLRFVRIFRGKPIRVARSLYEIRGGALYIRRGGRAVITSCLLTVNPIL
ITEFLISQSQATVRLLGGYILQEEGTLVITDVRIYVTRPGVLFREIYTVG
GQVLVLGGNLVATGCTFLGNFLFINVFGVGDALAVFGGTAIFTGCSFTLN
VAFIASQGTGLLLFMGGGVTVFTGCQSIINIGARSFFGAGGAIWNGAGVT
IMTGMSIHANLALLFGAGVGFVLGQGAGIFIKTGVSQTGYVAINAEACLG
FALFVGSGIVVQSETVWARVAAITAYYGGGGSVYIHAGAVSFINTFGLII
NAIAFIAASGGHLFLHAGWFTSVNVYFYKFEAITALYGQGTEILILAGGA
AMINTGYQGGTYFLFHGNRQLAQIWIAGHDVVLKSNKTFSGALASRDGVT
YIPKRNKTMRVSMKNVAFKKYNEMEVERVFGLKTHHRHLASLRSNVDKLL
VQGAQQRFLEESKAVSTPLVLATSATIATQMGADVEANIAAVEDGMLRMP
VLGEVYIPPIPQDVRTDNVYLAGALDECSLCDIHPGRTFDNVDGPGAAAC
AIADSCDSVLGADGSLFPGSTKAEQMWNPPAGNDQANSSIAVIELQAWYT
PTSPSASRIDPASVAIAVEQASMALGLPQRYHLKVQPDTVNPLAFHNDEY
VIAAQTDSKENGGLNAGEYGTTLVDEEAELLEALLKEGERKMMYEECTLG
KTFKFYLVSDWRNVTDAHMKAFKRQEGAKALGLALQDAQPVDERVQICEA
RVKTAVPLFVPGRKVSLFKDYAANDGKTSSLFALGQQDMLPLAVAELTDV
ATGNRVDDVQIGETYTLDLQHFPPSLPVTVKLVPRNGLAVMILGIFSSQP
TNDVAQAWNWTVSKAVAPGAYYLEVVGKKAGVFDGPLGGLTALMATTDIS
AFAYTQAFVVFE*
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Synonyms
Publications