NO29G01470, NO29G01470 (gene) Nannochloropsis oceanica

Overview
NameNO29G01470
Unique NameNO29G01470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length820
Alignment locationchr29:468086..468905 -

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Properties
Property NameValue
Descriptionmitochondrial ribosomal protein L11
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:468086..468905 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR036796Ribosomal_L11/L12_N_sf
IPR036769Ribosomal_L11_C_sf
IPR020784Ribosomal_L11_N
IPR020783Ribosomal_L11_C
IPR000911Ribosomal_L11/L12
Homology
BLAST of NO29G01470 vs. NCBI_GenBank
Match: CBJ26411.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 179.1 bits (453), Expect = 1.000e-41
Identity = 84/140 (60.00%), Postives = 104/140 (74.29%), Query Frame = 0
Query:    1 MSLLRRVRLRVPAGTAKPGPAIGQALGPLGLNMMEFCKAFNAETAAIIPNTPMQVSLAAYSNRTFTFKIKSPPTSWFLKRCAAVEKGAGKTVHEMVGSVHVKHIYEIAKVKQKDYHLSHLPLRSICRMIFGTCGTMGLKV 141
            MS +R VR+RVPAGTAKPGPAIGQALGPLG+NMMEFCK FN ET  I+ NTPM   L AY++R+FTFK+ +P T+W LKRCA VEKG  +  HE  G V +K +YEIAKVK  + H   LPL S+C+ +  T  +MGL++
Sbjct:    1 MSFVRTVRMRVPAGTAKPGPAIGQALGPLGINMMEFCKKFNEETKHIVQNTPMPCELTAYTDRSFTFKLSTPQTTWMLKRCAGVEKGGSRAGHEYCGKVGLKALYEIAKVKNAEDHSVLLPLESVCKSVRATALSMGLEI 140          
BLAST of NO29G01470 vs. NCBI_GenBank
Match: XP_009836271.1 (ribosomal protein L11 [Aphanomyces astaci] >ETV74165.1 ribosomal protein L11 [Aphanomyces astaci])

HSP 1 Score: 162.5 bits (410), Expect = 9.900e-37
Identity = 79/140 (56.43%), Postives = 103/140 (73.57%), Query Frame = 0
Query:    1 MSLLRRVRLRVPAGTAKPGPAIGQALGPLGLNMMEFCKAFNAETAAIIPNTPMQVSLAAYSNRTFTFKIKSPPTSWFLKRCAAVEKGAGKTVHEMVGSVHVKHIYEIAKVKQKDYHLSHLPLRSICRMIFGTCGTMGLKV 141
            MS+   VRLRV AG A P PAIGQALGPLG+NMMEFCK+FN  TA  IP TP+ V L A ++RTFT+  K+PPT+WFLK+ A +  G+  T  + VG+V ++HIYEIAKVKQ+D  L  + L+S+C+ I G+  ++GLKV
Sbjct:    1 MSVKGVVRLRVLAGKAAPSPAIGQALGPLGVNMMEFCKSFNERTAQFIPGTPIPVQLTAMNDRTFTYATKTPPTTWFLKKAAQITSGSDLTGQKEVGTVSLRHIYEIAKVKQQDELLDFIDLQSLCKSIIGSARSIGLKV 140          
BLAST of NO29G01470 vs. NCBI_GenBank
Match: OQS05966.1 (50S ribosomal protein L11 [Thraustotheca clavata])

HSP 1 Score: 162.5 bits (410), Expect = 9.900e-37
Identity = 77/134 (57.46%), Postives = 101/134 (75.37%), Query Frame = 0
Query:    7 VRLRVPAGTAKPGPAIGQALGPLGLNMMEFCKAFNAETAAIIPNTPMQVSLAAYSNRTFTFKIKSPPTSWFLKRCAAVEKGAGKTVHEMVGSVHVKHIYEIAKVKQKDYHLSHLPLRSICRMIFGTCGTMGLKV 141
            VRLRV AG A P PAIGQALGPLG+NMMEFC++FN  TA + PN P+ V L A ++RTFT+ IK+PPT+WFLK+ A +  G+  T  + VG+V ++HIYEIAKVKQ+D  L ++ L S+C+ I GT  +MGL+V
Sbjct:    8 VRLRVAAGKAAPSPAIGQALGPLGVNMMEFCRSFNDRTAHLTPNIPVPVQLTAMNDRTFTYAIKTPPTTWFLKKAAQITSGSDLTGQKEVGAVTLRHIYEIAKVKQQDELLDYIELPSLCKSIIGTAKSMGLRV 141          
BLAST of NO29G01470 vs. NCBI_GenBank
Match: OQR93227.1 (50S ribosomal protein L11 [Achlya hypogyna])

HSP 1 Score: 162.2 bits (409), Expect = 1.300e-36
Identity = 76/134 (56.72%), Postives = 101/134 (75.37%), Query Frame = 0
Query:    7 VRLRVPAGTAKPGPAIGQALGPLGLNMMEFCKAFNAETAAIIPNTPMQVSLAAYSNRTFTFKIKSPPTSWFLKRCAAVEKGAGKTVHEMVGSVHVKHIYEIAKVKQKDYHLSHLPLRSICRMIFGTCGTMGLKV 141
            VRLRV AG A P PAIGQALGPLG+NMMEFC++FN  TA + PN P+ V L A ++RTFT+ IK+PPT+WFLK+ A +  G+  T  + VG+V ++HIYEIAKVKQ+D  L ++ L S+C+ I G+  +MGL+V
Sbjct:    8 VRLRVAAGKAAPSPAIGQALGPLGVNMMEFCRSFNDRTAHLTPNIPVPVQLTAMADRTFTYTIKTPPTTWFLKKAAQITSGSDLTGQKEVGTVSLRHIYEIAKVKQQDELLDYIELESLCKSIIGSAKSMGLRV 141          
BLAST of NO29G01470 vs. NCBI_GenBank
Match: XP_002898261.1 (50S ribosomal protein L11 [Phytophthora infestans T30-4] >EEY63376.1 50S ribosomal protein L11 [Phytophthora infestans T30-4])

HSP 1 Score: 161.4 bits (407), Expect = 2.200e-36
Identity = 76/134 (56.72%), Postives = 100/134 (74.63%), Query Frame = 0
Query:    7 VRLRVPAGTAKPGPAIGQALGPLGLNMMEFCKAFNAETAAIIPNTPMQVSLAAYSNRTFTFKIKSPPTSWFLKRCAAVEKGAGKTVHEMVGSVHVKHIYEIAKVKQKDYHLSHLPLRSICRMIFGTCGTMGLKV 141
            VRLRV AG A P PAIGQALGPLG+NMMEFCKAFN  T+ +  N P+ V L AYS+RTF F  K+PPTSWFLK+ A ++ G+     ++VG+VH++ IYEIAKVKQ+D  + ++ L+SIC+ + G+  +MGL V
Sbjct:    9 VRLRVLAGKASPSPAIGQALGPLGVNMMEFCKAFNDRTSKMTENIPVPVVLTAYSDRTFNFVTKTPPTSWFLKKAAGIKSGSSTPGQQVVGTVHLRQIYEIAKVKQQDEMVDYIDLQSICKTLIGSAKSMGLDV 142          
BLAST of NO29G01470 vs. NCBI_GenBank
Match: XP_008879110.1 (ribosomal protein L11 [Aphanomyces invadans] >ETV92146.1 ribosomal protein L11 [Aphanomyces invadans])

HSP 1 Score: 159.5 bits (402), Expect = 8.300e-36
Identity = 78/140 (55.71%), Postives = 103/140 (73.57%), Query Frame = 0
Query:    1 MSLLRRVRLRVPAGTAKPGPAIGQALGPLGLNMMEFCKAFNAETAAIIPNTPMQVSLAAYSNRTFTFKIKSPPTSWFLKRCAAVEKGAGKTVHEMVGSVHVKHIYEIAKVKQKDYHLSHLPLRSICRMIFGTCGTMGLKV 141
            MS+   VRLRV AG A P PAIGQALGPLG+NMMEFCK+FN  T+ IIP TP+ V L A ++RTFT+  K+PPT+WFLK+ A +  G+  T  + VG+V ++HI+EIAKVKQ+D  L  + L S+C+ I G+  ++GLKV
Sbjct:    1 MSVKGVVRLRVLAGKAAPSPAIGQALGPLGVNMMEFCKSFNDRTSHIIPGTPIPVQLTAMTDRTFTYATKTPPTTWFLKKAAQITSGSDLTGQKEVGTVSLRHIFEIAKVKQQDELLDFIDLPSLCKSIIGSARSIGLKV 140          
BLAST of NO29G01470 vs. NCBI_GenBank
Match: OWY90174.1 (Ribosomal protein L11 [Phytophthora megakarya] >OWZ06274.1 Ribosomal protein L11 [Phytophthora megakarya])

HSP 1 Score: 158.7 bits (400), Expect = 1.400e-35
Identity = 75/134 (55.97%), Postives = 98/134 (73.13%), Query Frame = 0
Query:    7 VRLRVPAGTAKPGPAIGQALGPLGLNMMEFCKAFNAETAAIIPNTPMQVSLAAYSNRTFTFKIKSPPTSWFLKRCAAVEKGAGKTVHEMVGSVHVKHIYEIAKVKQKDYHLSHLPLRSICRMIFGTCGTMGLKV 141
            VRLRV AG A P PAIGQALGPLG+NMMEFCKAFN  T+ +  N P+ V L A+++RTFTF  K+PP SWFLK+ A +  G+      +VGSVH++ IYEIAKVKQ+D  + ++ L+SIC+ + G+  +MGL V
Sbjct:    9 VRLRVLAGKASPSPAIGQALGPLGVNMMEFCKAFNERTSKMTENIPVPVVLTAFTDRTFTFATKTPPASWFLKKAAGITSGSATPGQAVVGSVHLRQIYEIAKVKQQDEMVDYIDLQSICKTLIGSAKSMGLDV 142          
BLAST of NO29G01470 vs. NCBI_GenBank
Match: CCI47766.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 158.3 bits (399), Expect = 1.900e-35
Identity = 71/134 (52.99%), Postives = 100/134 (74.63%), Query Frame = 0
Query:    7 VRLRVPAGTAKPGPAIGQALGPLGLNMMEFCKAFNAETAAIIPNTPMQVSLAAYSNRTFTFKIKSPPTSWFLKRCAAVEKGAGKTVHEMVGSVHVKHIYEIAKVKQKDYHLSHLPLRSICRMIFGTCGTMGLKV 141
            VRLRV AG A P PAIGQALGPLG+NMMEFCK+FN  TA ++ + P  V+L A+++RTF F+IK+PPT+WFLK+CA +  G+       VG++ ++ IYEIAK+KQ D +L ++ L S+C+ I G+  +MGL++
Sbjct:    8 VRLRVAAGKASPSPAIGQALGPLGVNMMEFCKSFNDRTAHLLADVPTPVTLTAFADRTFEFQIKTPPTTWFLKKCAGITSGSATPGEVYVGNIKLRQIYEIAKIKQTDENLDYMDLPSLCKSIIGSAKSMGLRI 141          
BLAST of NO29G01470 vs. NCBI_GenBank
Match: XP_008609307.1 (50S ribosomal protein L11 [Saprolegnia diclina VS20] >EQC37145.1 50S ribosomal protein L11 [Saprolegnia diclina VS20])

HSP 1 Score: 157.9 bits (398), Expect = 2.400e-35
Identity = 75/134 (55.97%), Postives = 100/134 (74.63%), Query Frame = 0
Query:    7 VRLRVPAGTAKPGPAIGQALGPLGLNMMEFCKAFNAETAAIIPNTPMQVSLAAYSNRTFTFKIKSPPTSWFLKRCAAVEKGAGKTVHEMVGSVHVKHIYEIAKVKQKDYHLSHLPLRSICRMIFGTCGTMGLKV 141
            VRLRV AG A P PAIGQALGPLG+NMMEFC++FN  TA + P+ P+ V L A ++RTF++ IK+PPT+WFLK+ A V  G+  T  + VG V ++HIYEIAKVKQ+D  L ++ L S+C+ I G+  +MGL+V
Sbjct:    8 VRLRVAAGKAAPSPAIGQALGPLGVNMMEFCRSFNDRTAHLTPSIPVPVQLTAMNDRTFSYTIKTPPTTWFLKKAAQVTSGSELTGQKEVGQVSLRHIYEIAKVKQQDELLDYIELESLCKNIIGSAKSMGLRV 141          
BLAST of NO29G01470 vs. NCBI_GenBank
Match: CCA16557.1 (50S ribosomal protein L11 putative [Albugo laibachii Nc14])

HSP 1 Score: 157.5 bits (397), Expect = 3.200e-35
Identity = 72/134 (53.73%), Postives = 97/134 (72.39%), Query Frame = 0
Query:    7 VRLRVPAGTAKPGPAIGQALGPLGLNMMEFCKAFNAETAAIIPNTPMQVSLAAYSNRTFTFKIKSPPTSWFLKRCAAVEKGAGKTVHEMVGSVHVKHIYEIAKVKQKDYHLSHLPLRSICRMIFGTCGTMGLKV 141
            VRLRV AG A P PAIGQALGPLG+NMMEFCK+FN  T+ +I   P  V+L A ++RTF F+IK+PPT+WFLK+CA +   +       VG++ ++HIYEIAK+KQ D +L  + L S+C+ I G+  +MGLK+
Sbjct:    8 VRLRVAAGKASPSPAIGQALGPLGVNMMEFCKSFNERTSHLIAEVPTPVTLTALADRTFEFQIKTPPTTWFLKKCAGITSASATPGEVFVGNIKLRHIYEIAKIKQTDENLDFMELPSLCKSIIGSAKSMGLKI 141          
The following BLAST results are available for this feature:
BLAST of NO29G01470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ26411.11.000e-4160.00conserved unknown protein [Ectocarpus siliculosus][more]
XP_009836271.19.900e-3756.43ribosomal protein L11 [Aphanomyces astaci] >ETV741... [more]
OQS05966.19.900e-3757.4650S ribosomal protein L11 [Thraustotheca clavata][more]
OQR93227.11.300e-3656.7250S ribosomal protein L11 [Achlya hypogyna][more]
XP_002898261.12.200e-3656.7250S ribosomal protein L11 [Phytophthora infestans ... [more]
XP_008879110.18.300e-3655.71ribosomal protein L11 [Aphanomyces invadans] >ETV9... [more]
OWY90174.11.400e-3555.97Ribosomal protein L11 [Phytophthora megakarya] >OW... [more]
CCI47766.11.900e-3552.99unnamed protein product [Albugo candida][more]
XP_008609307.12.400e-3555.9750S ribosomal protein L11 [Saprolegnia diclina VS2... [more]
CCA16557.13.200e-3553.7350S ribosomal protein L11 putative [Albugo laibach... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL062nonsL062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR079ngnoR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005272NSK005272Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01470.1NO29G01470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601594gene_8326Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01470.1NO29G01470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01470 ID=NO29G01470|Name=NO29G01470|organism=Nannochloropsis oceanica|type=gene|length=820bp
ATGTCTCTGCTGCGGAGAGTCCGGCTGCGCGTGCCCGCGGGGACGGCCAA
GCCGGGGCCAGCCATCGGACAGgtctgtcacacagagggacagggggaga
gggagcgagagaggcgacctgcttcattttcaatctcacacgtaaaattg
tttaagtcagaattctaactcatctctcaccaacagGCACTAGGTCCTCT
CGGGCTGAACATGATGGAGTTTTGCAAGGCTTTCAACGCCGAGACGGCGG
CCATCATCCCCAACACGCCCATGCAGgtactaaggtggcagcagtgattg
tggcgtagggtattttgttctgtgtgacagtgcacgatatggggatgtgt
tggacagattcaggcccccggctcagctgtattttcatctcacacatgcg
catgcgctccctcattcctgctctgtcgtcacacagGTGTCCTTAGCAGC
CTACTCAAACCGGACGTTCACTTTCAAGATCAAAAGCCCACCCACGTCCT
GGTTCCTCAAGgtacgtgcatgcaaagtattgttgtcctatctcttgtgc
cgttgtgtagcgagctcaatccattgacattccttctgccccaccctcac
tcactagCGTTGCGCCGCAGTGGAGAAGGGTGCGGGCAAAACGGTGCACG
AGATGGTGGGCTCGGTTCATGTGAAGCACATTTATGAAATTGCCAAGGTC
AAGCAAAAGGATTACCATCTCAGTCATTTACCGCTCCGCTCTATTTGCCG
CATGATATTTGGGACGTGTGGGACCATGGGGTTAAAGGTAGACGGTCTTA
AGGACGCTCCACCCGTATAA
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protein sequence of NO29G01470.1

>NO29G01470.1-protein ID=NO29G01470.1-protein|Name=NO29G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MSLLRRVRLRVPAGTAKPGPAIGQALGPLGLNMMEFCKAFNAETAAIIPN
TPMQVSLAAYSNRTFTFKIKSPPTSWFLKRCAAVEKGAGKTVHEMVGSVH
VKHIYEIAKVKQKDYHLSHLPLRSICRMIFGTCGTMGLKVDGLKDAPPV*
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Synonyms
Publications