NO29G01370, NO29G01370 (gene) Nannochloropsis oceanica

Overview
NameNO29G01370
Unique NameNO29G01370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1037
Alignment locationchr29:434512..435548 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:434512..435548 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO29G01370 vs. NCBI_GenBank
Match: XP_005852497.1 (hypothetical protein NGA_0710200 [Nannochloropsis gaditana CCMP526] >EKU23336.1 hypothetical protein NGA_0710200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 82.8 bits (203), Expect = 6.500e-13
Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 0 
Query:    4 LFLAILILGMLATPALAFLAPLPVSYSRSVLTANPGSRVSRAPPLQAGSLTDLSLLIAAAADEYEYGAVAAPGWVLPLGAFLTLGLAVS 93
            L +A+L   +L +P LAFL PL  + S+  + ++   R  R   L+A S +D+ L +AAAADEYEYGAVAAPGWVLP+GA LTLGLAVS
Sbjct:    8 LSIAVLYCMILISPTLAFLPPLSTASSKFRVASS--HRAPRTTSLKAASFSDVCLSVAAAADEYEYGAVAAPGWVLPVGALLTLGLAVS 94
[Close]
BLAST of NO29G01370 vs. NCBI_GenBank
Match: EWM21362.1 (hypothetical protein Naga_100666g1 [Nannochloropsis gaditana])

HSP 1 Score: 80.5 bits (197), Expect = 3.200e-12
Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = 0 
Query:    4 LFLAILILGMLATPALAFLAPLPVSYSRSVLTANPGSRVSRAPPLQAGSLTDLSLLIAAAADEYEYGAVAAPGWVLPLGAFLTLGLAVS 93
            L +A+L   +L +P LAFL PL  + S+  + ++   R  R   L+A S +D+ + +AAAADEYEYGAVAAPGWVLP+GA LTLGLAV+
Sbjct:    8 LSIAVLYCMVLISPTLAFLPPLSTASSKFRVASS--HRAPRTTSLKAASFSDVCVSVAAAADEYEYGAVAAPGWVLPVGALLTLGLAVA 94
The following BLAST results are available for this feature:
BLAST of NO29G01370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005852497.16.500e-1355.06hypothetical protein NGA_0710200 [Nannochloropsis ... [more]
EWM21362.13.200e-1252.81hypothetical protein Naga_100666g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR079ngnoR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01370.1NO29G01370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100666g1gene9058Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01370.1NO29G01370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01370 ID=NO29G01370|Name=NO29G01370|organism=Nannochloropsis oceanica|type=gene|length=1037bp
ATGTCACGCCTATTTCTTGCCATCCTCATCCTGGGCATGCTTGCCACCCC
TGCGCTGGCCTTCCTCGCCCCGCTTCCTGTCTCTTATAGCCGCTCGGTGC
TTACTGCTAACCCGGGATCTCGGGTTTCGCGGGgtaagtccactgaaagc
ctccacgtcttgctgtctatcagcctcgtcctctaacttaacctgacata
caccacgcacgccccacgcccttgtaaacacacacagCCCCCCCTCTCCA
AGCTGGCTCCCTCACGGACTTGTCCCTCCTTATTGCCGCTGCCGCGGATG
AGTACGAGTACGGTGCGGTAGCTGCTCCGGgtaggtgtgttcgatttctt
acttgctcctcccttgcctcctcgattccgccctaacatccccgtttttg
gctgacagGATGGGTACTGCCTTTAGGAGCCTTTTTGACACTGGGATTAG
CGGTTAGTTATTTAAAGGATGTCTAATCTCTTGTCCTCTCCTGCCATTTT
CGGGTACCTGTTCCCCCACCCTCTGTGACTTTTTTCTCTTCCTTGACTTT
GATTGATTACATGCTCATTGCACAAGAGGTGCTCATCTTCCTCCTTCTCC
TCTCCCTCGCTCATTCCCCATACTGGATACAGGTGGCCATCCCTCTGGCT
CTGCGACCGGGTACGGAGGCGTTCGAGGAGGAGAAAGGCCGACTGGAGGA
GATGCGGAGAAACCGAGGGGAGGAGGAGGAGTAAACGGTGAATAGACAGA
CGAGGCGATTGAAGAGAGAACAGGAGAGCGAGAGAGGAAGGGGAGTTGCT
TTAATGGTGACTCTTGTGTGCGGGGAGGGAGAAAGGGAGGAAGAGAGGAA
GAGGGAGTCGATGAGAAAGAGTATATGCATCAATTGATCAAGAGTCATGA
ACACGAAAACGGAAAAAGAGCAAAAAGGTGAGAAGAAGGATTGAATTAAG
AGAGCAGTCAGATAACCAACCCAGAGAACGCCAAGGAAACAACAAACAAC
CTAACGCATCAGGCATCTAAGCCCAGGATCACCTCTC
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protein sequence of NO29G01370.1

>NO29G01370.1-protein ID=NO29G01370.1-protein|Name=NO29G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=98bp
MSRLFLAILILGMLATPALAFLAPLPVSYSRSVLTANPGSRVSRAPPLQA
GSLTDLSLLIAAAADEYEYGAVAAPGWVLPLGAFLTLGLAVSYLKDV*
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Synonyms
Publications