NO29G01350, NO29G01350 (gene) Nannochloropsis oceanica

Overview
NameNO29G01350
Unique NameNO29G01350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3284
Alignment locationchr29:424159..427442 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:424159..427442 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005120UPF3_dom
Homology
The following BLAST results are available for this feature:
BLAST of NO29G01350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR079ngnoR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01350.1NO29G01350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|189623gene_8310Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01350.1NO29G01350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01350 ID=NO29G01350|Name=NO29G01350|organism=Nannochloropsis oceanica|type=gene|length=3284bp
TTACCCATCAGCAGCGTCCCTGTTTGTATTTGTGAGCGTTCATGCGCAGA
GTGCAATTATGTTTGATGCGGTTGATTTGGGCGTTAACATGGGCTTGCTT
GCGCCCGCAGCCAGCATCACTATATCATCGAAGTTATTTCCCTGCGTTGC
TCGCCACTTCCCTGTTCGCTTGCTCCTCCCAGCTTCTCAACTCGACCGGC
AAAATCATCCAGTACTGTACAACGCATCACACAGATCAACTAATCCCCTA
CTCCGCCATTACGGAATCGGAATTTTGCCCCACCAGAAACATCAACGCCT
GAGTCGGCGAAAGCCCTCATCGAAGAAGGCAAGAAAGACCTACATGAAAA
CGCCACCACACCATGCTCACCGAAACATTTGCATACGCGCATAAAATCTT
ACAATCAGAGATAGAAAAGTCACCTGATGGGTCGCCCGACGGAAGGCGGC
AGCAGCAGCGCCAAGGGGAGTGCCGGAGGAGGAGGAGGAGGAGGCAGAAT
GCCGTCGGGTCACGGAGGGGGTGGGGAAGGCAAGAAGAAGCAAGAGGGAG
AAGGAGAAGGGGGTGGTGGAGGACGAGAGGGGGGAGGCAGTGGACTTTCG
TCGGCAGCCTCAGAAGGCATCAGCAGGCAGCGAAAAGGCGCCGGTGGTGG
GAGGCGAAGAGgtatgcattccttcaccctctaaatctctctattccacc
ccctgcatcgttccctgactcctcgctatctcacgatcccgccaacagAG
CATAAAGCGAATGAAGGCGCGGGGGGAGAGAAGACGAGATCCCGTCGTGG
CGGACGGAAGCACCGAAAGAAGGAGAGCACACGAGAAGAGGGGGTAGGCA
ATGACGGGGGTGGGGGAAGAAGAGGAGGAGCAGGAGCAGGACATAGTGGC
CGAGGAAAAGAGGAGAAGAGAAAGAAAGGAGGAGGTGGAAAGGATAGAGG
AAGAGGAGGGGGGGCAAAGGGAGGGAAGGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGGAG
GAGGGGCCACGGCGGGTGAAGTTGGTGATGCGGCGCTTGCCTGGGGGATT
GACAAGGGCGGAGCTAGTTGCGCTCTTGAACGAGGTGTTGGTCGAGgttt
gtaggaagggaggagacagagggagggaaggagggaaaggcgggttttta
ttgaacagattttgtttagccgcggtcgtcgccttacctgcatctcatca
tgcacagCATGGCCTCCTGCCTGCGTCGTTGGCCACATACATGCAGGAAG
ACGGGGCAGCAGTACAACAGCAACAACAAGAGGAACAGCAATCTGAGTTT
GAGGAGAACGGAAGGGAGGCAAGCACATCAGCACCAATGGAAGGAAGAAA
AGGAGCGACGACCGTGGAGGTCGGCGCTCCTTCCTCCTCTTTCCCTCCCT
CCCTCCCTCCCTCCCTCCCCTACACCATCTTCCACCGCATTTCCGGCGGC
CAGATTGTCAAGTCTCAAGGCCGGGCCAGCAAAGTCCCGGgtacgtccct
ccctccctccctcccccctgcctgcccccttgagccttccatctttttgt
gtgctatctaatttatcctccccctttattcatcccctcctcccatcttc
tgcagGTGCTGCTTTCCTCCTTGCTCCCGACCAGGTCTCGGCCGATGCTT
TGCTCCGAGCGCTAAATGGACAGGCGGCCCTCCGgtaaggggagagggag
ggtggaggcgagggaggaagcgaagttaccccccccatcaacccgtccca
gcagcaacgcatgaccctcacttccttcttccctccctctctccctccct
gcccctcttcctcccgctacttccttcccagGATCTACACCTCCCACCCC
CAGTTCGACAGCAGCAGCCCCTACCTCACCCCTCTCTGCCTCCCCGCTCC
CTTCAAAAAGACGCCCAAAAGGAAGGAGCGCCAGGACCCGCTCGAGGACA
CGATAGAAGAGgtccgcctccactccctccctgtcttccattccttttcc
catcctccacctctccctcagccctcatcgcctcctccttggcctgtctt
tattccctagacattgaagggaagagagagactcgacctccaatgaatgc
ttttatttgagagattgagagagaagggagagaaggaggaagagaggaag
ggacagcgtttcctatccaccgtctggtttttaatgcacccctctttcgc
tcctcccctccctccctctctctctctctccctttctaccttcctcagGA
CGGGGACTACCAGCGCTTCCTGGAGCAGCTCAAGGCAGGCCCCTCGAAGC
CCACCCCCCTCGACCAGCAGCTGGCAGATGTTGAGGAGGGGGCGAAAGgt
aaggatggagggaacgggggggttggagcgagcttcatctctatcgcgcc
gtctctcatcccctccctccatccttccctcccttatgcacccactcagA
GGTCAAGTCTTCAGCCTTGCTCGATTTCATGCTCCAGCAACGGACTGCCA
AAAAGGGGAAAGGAGGGAGGGAAGGAGGGCGGGCGGGAGGGCGGGACAGG
GACCGGACCGGGAAGGAGAAGGCAGAGGGGAAGGGGAAAAAGAAGGGAAA
AGAGGGTAAGGATGGAAGAAAGGAGGGGGGTGAGAAGGAGAAGGAGAGGA
AGAAGAAAGGTGAGAGAAAGCAAACATCTAAAGACGCAGCACTCAAGAGA
AAGAAGCGACTGGAGGAGCGGGAGCAGCAGCAGCAGGCTTCCCTCCTTGC
AACTGCTTTCTTTCCTCCCCTGGGCGGCACCAGCAGCAGCAGCATCAGCA
GCAGCAGTGACGTGTTTCCAACCCTGTCCTTTGCTGCTGCTCCTCCTTCC
TCTCCTCCCGCTCCACTCCCTCCATCTCTTCTTCCTCAACAGCAACAGCT
GCCACAGCAGCTGTCGAGACCGAGAGGAGGAAAAGGAGGGGCGGAAGAAG
GCAGAGTGTCCCTTCCAGCTGCTCTTCCATCAACAACCGTTGCTCGGCGG
CAGCAGCAACAGCTGCCACCGAGGGGAGAATTGAGACGAGATGGCGGAGG
AGGAGGAGGAGAAGGGGGGGCAAGGAAAGAGGGAAGGGAGGGAAGGACGG
CAGAGAGAGAAGAGCTGCTGGTAGTGGACAAAGTGGTGACGGTGGTGGTG
GTGGGGGAGGAGGAGGAGGAGGAGGTGGTGGTAGTGGTGTTGCAAGGGCG
AACAGAGGAGGGCAAAGAGGAGAAGGAGGAGTGA
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protein sequence of NO29G01350.1

>NO29G01350.1-protein ID=NO29G01350.1-protein|Name=NO29G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=670bp
MGRPTEGGSSSAKGSAGGGGGGGRMPSGHGGGGEGKKKQEGEGEGGGGGR
EGGGSGLSSAASEGISRQRKGAGGGRRREHKANEGAGGEKTRSRRGGRKH
RKKESTREEGVGNDGGGGRRGGAGAGHSGRGKEEKRKKGGGGKDRGRGGG
AKGGKGGGGGGGGGGGGGGGGGGGGGGREEGPRRVKLVMRRLPGGLTRAE
LVALLNEVLVEHGLLPASLATYMQEDGAAVQQQQQEEQQSEFEENGREAS
TSAPMEGRKGATTVEVGAPSSSFPPSLPPSLPYTIFHRISGGQIVKSQGR
ASKVPGAAFLLAPDQVSADALLRALNGQAALRIYTSHPQFDSSSPYLTPL
CLPAPFKKTPKRKERQDPLEDTIEEDGDYQRFLEQLKAGPSKPTPLDQQL
ADVEEGAKEVKSSALLDFMLQQRTAKKGKGGREGGRAGGRDRDRTGKEKA
EGKGKKKGKEGKDGRKEGGEKEKERKKKGERKQTSKDAALKRKKRLEERE
QQQQASLLATAFFPPLGGTSSSSISSSSDVFPTLSFAAAPPSSPPAPLPP
SLLPQQQQLPQQLSRPRGGKGGAEEGRVSLPAALPSTTVARRQQQQLPPR
GELRRDGGGGGGEGGARKEGREGRTAEREELLVVDKVVTVVVVGEEEEEE
VVVVVLQGRTEEGKEEKEE*
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Synonyms
Publications