NO29G01320, NO29G01320 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO29G01320 vs. NCBI_GenBank
Match: XP_007485670.1 (PREDICTED: TNF receptor-associated factor 4 isoform X1 [Monodelphis domestica]) HSP 1 Score: 77.4 bits (189), Expect = 1.700e-10 Identity = 86/384 (22.40%), Postives = 129/384 (33.59%), Query Frame = 0 Query: 2 GIQAIFVDPVEDELQCPICHLVLDKPVSHCSQGHTFCQTCIQAWLNHPP----PSKAGPSS-----SKTKKKAAHCPGCMLPL--GPKVRNIVAEAMVAKLRVRCSNSNRREGEQGMMRKGGKYEEEGGDGGREGEREGPACEWVGRLEELERHRRSDCAYEVIACPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNCNSSENGCSYQAWRSRIEKEHVSQCPHRPISCSLAC-GWTGKKMEEARHQGTSCPRVILFCQNKGCPASFVRAGSGAHYDAECPFQPVPCVFAPHGCLVRPLRQAQAQHQAEAAVEHASLTASKISSLEAGIERMCGQFEDLRQRVE 374 G F++ + L CP+C + +PV + GH FC TC+Q +L P PS+A P S + CP LPL + EA V L +RC +S EEG C W G L +L+ H S C Y V+ACP + EN C + R + + +++CP R C+ + ++ +HQ CPR + C N+ S R +H C PV C F GC R + A +H E+ H ++ + +S R + ++LR+ VE Sbjct: 3 GFDYKFLEKPKRRLLCPLCAKAMREPVQVSTCGHRFCDTCLQEFLRQPSGAPLPSRALPDRPDWRLSPHSEGVFKCPEDQLPLDYAKIYPDPELEAQVLSLPIRCIHS-----------------EEG-------------CRWTGALRQLQVH-LSSCGYNVVACP---------------------NRCNGKLSRRDLPSHLQHECPKRRLKCDFCGIDFTGEAFESHEGVCPQESVYCENKCGARMMRRLLGQHMMAECPKRTQPCAYCTKEFVYDTIQNHQHQ---CPRYPIPCPNQCGMGSIPREDLNSHLKENCSTVPVLCPFKDAGCKHRCPKLAMGRHMEESVKPHLAMMCALVS-------RQRQELQELRRDVE 324
BLAST of NO29G01320 vs. NCBI_GenBank
Match: XP_019860737.1 (PREDICTED: TNF receptor-associated factor 3-like isoform X1 [Amphimedon queenslandica] >XP_019860738.1 PREDICTED: TNF receptor-associated factor 3-like isoform X1 [Amphimedon queenslandica] >XP_019860739.1 PREDICTED: TNF receptor-associated factor 3-like isoform X1 [Amphimedon queenslandica] >XP_019860740.1 PREDICTED: TNF receptor-associated factor 3-like isoform X1 [Amphimedon queenslandica] >XP_019860741.1 PREDICTED: TNF receptor-associated factor 3-like isoform X1 [Amphimedon queenslandica]) HSP 1 Score: 65.9 bits (159), Expect = 5.000e-7 Identity = 43/152 (28.29%), Postives = 67/152 (44.08%), Query Frame = 0 Query: 228 CNSSENGCSYQAWRSRIEKEHVS-----QCPHRPISCSLACGWTGKKMEEARHQGTSCPRVILFCQNKGCPASFVRAGSGAHYDAECPFQPVPCVFAPHGCLVRPLRQAQAQHQAEAAVEHASLTASKISSLEAGIERMCGQFEDLRQRVEH 375 C E C Y+ + R ++ ++ +CP RP C C G + + C + + C NK + R AH + ECP +PV CVF+ GC +PLR+ H A+ H +L A L+ E+M + +L+ R H Sbjct: 114 CQYEEVKCRYEKCQERKQRRYLKYHEDRECPQRPFQCQY-CRRKGTFLSITKDHYEECRQYPVTCPNKCSSTNMPRGSLTAHIN-ECPLEPVDCVFSWAGCNDKPLRKDVHVHTADTM--HMTLLAVACGQLKKENEQMKQEISNLKSRPYH 261
BLAST of NO29G01320 vs. NCBI_GenBank
Match: XP_019860742.1 (PREDICTED: TNF receptor-associated factor 3-like isoform X2 [Amphimedon queenslandica]) HSP 1 Score: 65.9 bits (159), Expect = 5.000e-7 Identity = 43/152 (28.29%), Postives = 67/152 (44.08%), Query Frame = 0 Query: 228 CNSSENGCSYQAWRSRIEKEHVS-----QCPHRPISCSLACGWTGKKMEEARHQGTSCPRVILFCQNKGCPASFVRAGSGAHYDAECPFQPVPCVFAPHGCLVRPLRQAQAQHQAEAAVEHASLTASKISSLEAGIERMCGQFEDLRQRVEH 375 C E C Y+ + R ++ ++ +CP RP C C G + + C + + C NK + R AH + ECP +PV CVF+ GC +PLR+ H A+ H +L A L+ E+M + +L+ R H Sbjct: 114 CQYEEVKCRYEKCQERKQRRYLKYHEDRECPQRPFQCQY-CRRKGTFLSITKDHYEECRQYPVTCPNKCSSTNMPRGSLTAHIN-ECPLEPVDCVFSWAGCNDKPLRKDVHVHTADTM--HMTLLAVACGQLKKENEQMKQEISNLKSRPYH 261
BLAST of NO29G01320 vs. NCBI_GenBank
Match: ADZ55454.1 (TNF receptor-associated factor 3 [Cyprinus carpio]) HSP 1 Score: 65.5 bits (158), Expect = 6.500e-7 Identity = 38/114 (33.33%), Postives = 58/114 (50.88%), Query Frame = 0 Query: 247 EHVS-QCPHRPISCSLACGWTGKKMEEARHQGTSCPRVILFCQNKGCPASFVRAGSGAHYDAECPFQPVPCVFAPHGCLVRPLRQAQAQHQAEAAVEHASLTASKISSLEAGIE 360 EH+S +C HR I+C C E +H+ T CP + C N +S +R+ +H +CP V C F +GC + L Q +H++ A EH L A + ++LEA +E Sbjct: 166 EHLSRKCKHREITCEF-CNHKMALTELQKHKDTVCPAFPVACPNHCSFSSILRSELSSH-QHDCPKAQVTCSFIRYGCSFKGLNQEMREHESSFASEHLRLMAVRNTTLEAKVE 277
BLAST of NO29G01320 vs. NCBI_GenBank
Match: KTG41051.1 (hypothetical protein cypCar_00006537, partial [Cyprinus carpio]) HSP 1 Score: 65.5 bits (158), Expect = 6.500e-7 Identity = 38/114 (33.33%), Postives = 58/114 (50.88%), Query Frame = 0 Query: 247 EHVS-QCPHRPISCSLACGWTGKKMEEARHQGTSCPRVILFCQNKGCPASFVRAGSGAHYDAECPFQPVPCVFAPHGCLVRPLRQAQAQHQAEAAVEHASLTASKISSLEAGIE 360 EH+S +C HR I+C C E +H+ T CP + C N +S +R+ +H +CP V C F +GC + L Q +H++ A EH L A + ++LEA +E Sbjct: 220 EHLSRKCKHREITCEF-CNHKMALTELQKHKDTVCPAFPVACPNHCSFSSILRSELSSH-QHDCPKAQVTCSFIRYGCSFKGLNQEMREHESSFASEHLRLMAVRNTTLEAKVE 331 The following BLAST results are available for this feature:
BLAST of NO29G01320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO29G01320 ID=NO29G01320|Name=NO29G01320|organism=Nannochloropsis oceanica|type=gene|length=2122bpback to top protein sequence of NO29G01320.1 >NO29G01320.1-protein ID=NO29G01320.1-protein|Name=NO29G01320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=597bpback to top Synonyms
Publications
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