NO29G01320, NO29G01320 (gene) Nannochloropsis oceanica

Overview
NameNO29G01320
Unique NameNO29G01320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2122
Alignment locationchr29:415943..418064 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:415943..418064 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR008974TRAF-like
IPR001841Znf_RING
IPR001293Znf_TRAF
Homology
BLAST of NO29G01320 vs. NCBI_GenBank
Match: XP_007485670.1 (PREDICTED: TNF receptor-associated factor 4 isoform X1 [Monodelphis domestica])

HSP 1 Score: 77.4 bits (189), Expect = 1.700e-10
Identity = 86/384 (22.40%), Postives = 129/384 (33.59%), Query Frame = 0
Query:    2 GIQAIFVDPVEDELQCPICHLVLDKPVSHCSQGHTFCQTCIQAWLNHPP----PSKAGPSS-----SKTKKKAAHCPGCMLPL--GPKVRNIVAEAMVAKLRVRCSNSNRREGEQGMMRKGGKYEEEGGDGGREGEREGPACEWVGRLEELERHRRSDCAYEVIACPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNCNSSENGCSYQAWRSRIEKEHVSQCPHRPISCSLAC-GWTGKKMEEARHQGTSCPRVILFCQNKGCPASFVRAGSGAHYDAECPFQPVPCVFAPHGCLVRPLRQAQAQHQAEAAVEHASLTASKISSLEAGIERMCGQFEDLRQRVE 374
            G    F++  +  L CP+C   + +PV   + GH FC TC+Q +L  P     PS+A P       S   +    CP   LPL       +   EA V  L +RC +S                 EEG             C W G L +L+ H  S C Y V+ACP                                                                    +     EN C  +  R  + +  +++CP R   C+     +    ++  +HQ   CPR  + C N+    S  R    +H    C   PV C F   GC  R  + A  +H  E+   H ++  + +S       R   + ++LR+ VE
Sbjct:    3 GFDYKFLEKPKRRLLCPLCAKAMREPVQVSTCGHRFCDTCLQEFLRQPSGAPLPSRALPDRPDWRLSPHSEGVFKCPEDQLPLDYAKIYPDPELEAQVLSLPIRCIHS-----------------EEG-------------CRWTGALRQLQVH-LSSCGYNVVACP---------------------NRCNGKLSRRDLPSHLQHECPKRRLKCDFCGIDFTGEAFESHEGVCPQESVYCENKCGARMMRRLLGQHMMAECPKRTQPCAYCTKEFVYDTIQNHQHQ---CPRYPIPCPNQCGMGSIPREDLNSHLKENCSTVPVLCPFKDAGCKHRCPKLAMGRHMEESVKPHLAMMCALVS-------RQRQELQELRRDVE 324          
BLAST of NO29G01320 vs. NCBI_GenBank
Match: XP_019860737.1 (PREDICTED: TNF receptor-associated factor 3-like isoform X1 [Amphimedon queenslandica] >XP_019860738.1 PREDICTED: TNF receptor-associated factor 3-like isoform X1 [Amphimedon queenslandica] >XP_019860739.1 PREDICTED: TNF receptor-associated factor 3-like isoform X1 [Amphimedon queenslandica] >XP_019860740.1 PREDICTED: TNF receptor-associated factor 3-like isoform X1 [Amphimedon queenslandica] >XP_019860741.1 PREDICTED: TNF receptor-associated factor 3-like isoform X1 [Amphimedon queenslandica])

HSP 1 Score: 65.9 bits (159), Expect = 5.000e-7
Identity = 43/152 (28.29%), Postives = 67/152 (44.08%), Query Frame = 0
Query:  228 CNSSENGCSYQAWRSRIEKEHVS-----QCPHRPISCSLACGWTGKKMEEARHQGTSCPRVILFCQNKGCPASFVRAGSGAHYDAECPFQPVPCVFAPHGCLVRPLRQAQAQHQAEAAVEHASLTASKISSLEAGIERMCGQFEDLRQRVEH 375
            C   E  C Y+  + R ++ ++      +CP RP  C   C   G  +   +     C +  + C NK    +  R    AH + ECP +PV CVF+  GC  +PLR+    H A+    H +L A     L+   E+M  +  +L+ R  H
Sbjct:  114 CQYEEVKCRYEKCQERKQRRYLKYHEDRECPQRPFQCQY-CRRKGTFLSITKDHYEECRQYPVTCPNKCSSTNMPRGSLTAHIN-ECPLEPVDCVFSWAGCNDKPLRKDVHVHTADTM--HMTLLAVACGQLKKENEQMKQEISNLKSRPYH 261          
BLAST of NO29G01320 vs. NCBI_GenBank
Match: XP_019860742.1 (PREDICTED: TNF receptor-associated factor 3-like isoform X2 [Amphimedon queenslandica])

HSP 1 Score: 65.9 bits (159), Expect = 5.000e-7
Identity = 43/152 (28.29%), Postives = 67/152 (44.08%), Query Frame = 0
Query:  228 CNSSENGCSYQAWRSRIEKEHVS-----QCPHRPISCSLACGWTGKKMEEARHQGTSCPRVILFCQNKGCPASFVRAGSGAHYDAECPFQPVPCVFAPHGCLVRPLRQAQAQHQAEAAVEHASLTASKISSLEAGIERMCGQFEDLRQRVEH 375
            C   E  C Y+  + R ++ ++      +CP RP  C   C   G  +   +     C +  + C NK    +  R    AH + ECP +PV CVF+  GC  +PLR+    H A+    H +L A     L+   E+M  +  +L+ R  H
Sbjct:  114 CQYEEVKCRYEKCQERKQRRYLKYHEDRECPQRPFQCQY-CRRKGTFLSITKDHYEECRQYPVTCPNKCSSTNMPRGSLTAHIN-ECPLEPVDCVFSWAGCNDKPLRKDVHVHTADTM--HMTLLAVACGQLKKENEQMKQEISNLKSRPYH 261          
BLAST of NO29G01320 vs. NCBI_GenBank
Match: ADZ55454.1 (TNF receptor-associated factor 3 [Cyprinus carpio])

HSP 1 Score: 65.5 bits (158), Expect = 6.500e-7
Identity = 38/114 (33.33%), Postives = 58/114 (50.88%), Query Frame = 0
Query:  247 EHVS-QCPHRPISCSLACGWTGKKMEEARHQGTSCPRVILFCQNKGCPASFVRAGSGAHYDAECPFQPVPCVFAPHGCLVRPLRQAQAQHQAEAAVEHASLTASKISSLEAGIE 360
            EH+S +C HR I+C   C       E  +H+ T CP   + C N    +S +R+   +H   +CP   V C F  +GC  + L Q   +H++  A EH  L A + ++LEA +E
Sbjct:  166 EHLSRKCKHREITCEF-CNHKMALTELQKHKDTVCPAFPVACPNHCSFSSILRSELSSH-QHDCPKAQVTCSFIRYGCSFKGLNQEMREHESSFASEHLRLMAVRNTTLEAKVE 277          
BLAST of NO29G01320 vs. NCBI_GenBank
Match: KTG41051.1 (hypothetical protein cypCar_00006537, partial [Cyprinus carpio])

HSP 1 Score: 65.5 bits (158), Expect = 6.500e-7
Identity = 38/114 (33.33%), Postives = 58/114 (50.88%), Query Frame = 0
Query:  247 EHVS-QCPHRPISCSLACGWTGKKMEEARHQGTSCPRVILFCQNKGCPASFVRAGSGAHYDAECPFQPVPCVFAPHGCLVRPLRQAQAQHQAEAAVEHASLTASKISSLEAGIE 360
            EH+S +C HR I+C   C       E  +H+ T CP   + C N    +S +R+   +H   +CP   V C F  +GC  + L Q   +H++  A EH  L A + ++LEA +E
Sbjct:  220 EHLSRKCKHREITCEF-CNHKMALTELQKHKDTVCPAFPVACPNHCSFSSILRSELSSH-QHDCPKAQVTCSFIRYGCSFKGLNQEMREHESSFASEHLRLMAVRNTTLEAKVE 331          
The following BLAST results are available for this feature:
BLAST of NO29G01320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
XP_007485670.11.700e-1022.40PREDICTED: TNF receptor-associated factor 4 isofor... [more]
XP_019860737.15.000e-728.29PREDICTED: TNF receptor-associated factor 3-like i... [more]
XP_019860742.15.000e-728.29PREDICTED: TNF receptor-associated factor 3-like i... [more]
ADZ55454.16.500e-733.33TNF receptor-associated factor 3 [Cyprinus carpio][more]
KTG41051.16.500e-733.33hypothetical protein cypCar_00006537, partial [Cyp... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR079ngnoR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01320.1NO29G01320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|189560gene_8307Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01320.1NO29G01320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01320 ID=NO29G01320|Name=NO29G01320|organism=Nannochloropsis oceanica|type=gene|length=2122bp
ACAGCCCCGACCGACATAGCTACCCGAGGCCAAGATGGGCATTCAAGCAA
TTTTCGTCGACCCAGTAGAGGACGAGTTGCAATGTCCTATCTGCCATCTG
GTATTGGATAAGCCAGTCTCTCACTGTAGTCAAGGGCACACTTTTTGTCA
GACCTGCATTCAAGCCTgtacgtatcttgggaggagaaaaaaggggagag
tcgagagaggtgcgtgatcttgaaagagggagagactcttactcacagcc
cccgtcaacattcctcttcctcctccaaccttcatccttctagGGTTGAA
TCATCCCCCACCATCTAAAGCCGGTCCTTCCTCCTCCAAGACGAAAAAGA
AAGCTGCTCACTGTCCTGGCTGCATGCTGCCTCTGGGCCCAAAAGTCAGG
AACATTGTCGCCGAAGCCATGGTGGCCAAGCTCCGGGTCCGCTGCAGCAA
CAGCAACAGAAGGGAGGGCGAGCAGGGTATGATGAGGAAGGGGGGGAAAT
ACGAGGAGGAAGGAGGGGATGGAGGGAGGGAGGGAGAGAGGGAGGGGCCG
GCATGTGAGTGGGTGGGGAGGTTGGAAGAGCTTGAGAGGCATCGACGATC
AGATTGTGCGTATGAGGTCATTGCGTGTCCGTATCATCATCATCATCATC
ATCGTCAGCAGCAGCAGGAGCCTCGAGAGGAGCGAGCGGAGCAAGTAGAG
GAAGGGGAAAAGGAAGAGAGCTACAGTAGCAACAGCCAGAGCAGCAGCAA
CAGCAGCAGCACGAGGAAGGACAGCAAGCGTCAGACGTCCGAGGCGAAGA
AGACCTGTGCCATCTCCACCGCTACCACCACCGCTAGAAACTGCAACAGC
AGTGAAAATGGCTGCTCCTATCAGGCTTGGCGCTCGCGTATCGAAAAGGA
ACACGTCTCCCAGTGCCCCCATCGCCCCATCTCCTGCTCCCTTGCCTGCG
GGTGGACGGGAAAGAAGATGGAGGAAGCCCGTCACCAGGGCACAAGCTGC
CCACGTGTCATCCTGTTTTGTCAGAATAAGGGGTGCCCGGCCTCTTTTGT
ACGGGCGGGGAGTGGCGCCCACTACGACGCAGAGTGTCCGTTCCAGCCGG
TGCCCTGTGTGTTTGCCCCGCACGGCTGTCTCGTGCGGCCGCTCAGGCAG
GCCCAAGCGCAGCATCAGGCGGAGGCAGCGGTAGAGCACGCCAGCTTGAC
GGCCAGTAAAATCTCGAGTCTAGAGGCGGGCATCGAGAGAATGTGCGGGC
AATTCGAGGACTTGCGGCAACGgtaagaaacgccctccctccctccctcc
ccttgtccctcacactcgggcactacgagagactcccaggggcggaatcg
tctctactgtgtccaccccgcccaaccagacaagctactcactcagtcac
ccacccctccctccttttattcccctccctccccttcccctagCGTGGAG
CACTCGGAGAAGGCCACGAGGGAAACTATCGTGTCGCTGGTTGCCAACCC
CCACCCGGGCGTCTACCTCATCCTGTACTCCCGCATTCGCAGGCAGTGGA
GCCAAGGCGGAGGAATCGGTCTGCTGGGAGGGAGGGGGGGAGGGAGGGAG
GGAACAGACGACAGATTGAGTCAAGCGATCGACCTGTTCTTGGAGGGCGT
GGTATCGGATGCTATCCCTTCCTCCCCCGCTGCCTCGACCCCCTCATTCT
TGCCGCGGTTAGAAGAAGGGAGGGAGGGAGGGGGAGAGGGAGGGGGGGAA
GGAGGGGGGAAGGACGGGTTGATGGATATGGCAGCAGCGGCAGCGGTGGC
AGCAGCGGCTTTGGCAGAGAAGATGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGAGGGGTTGGCGGGAGGGATGAAGGGCCGGCATTGGATGCGGTT
AAGTTCTTTGAAAGGCTGCAGCAAGGAGGGGCGGGGAGGAGTCTATTCCA
GACTGTGAATGGAGGTTTAAGGGGAGGAGGGGTAAGAGGAGGAGGAGGAA
GGGGAGGAGGAAGGGGAGGAGAAAGGGAGGGAGGGGGAGGTCGAGGGAGG
GGAAGGAGGGCAGGCCATCGACAGCATGGTGGTGAGGGCGAAGTGACGTA
CATCGAGGAGGTGGAAGGATGA
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protein sequence of NO29G01320.1

>NO29G01320.1-protein ID=NO29G01320.1-protein|Name=NO29G01320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=597bp
MGIQAIFVDPVEDELQCPICHLVLDKPVSHCSQGHTFCQTCIQAWLNHPP
PSKAGPSSSKTKKKAAHCPGCMLPLGPKVRNIVAEAMVAKLRVRCSNSNR
REGEQGMMRKGGKYEEEGGDGGREGEREGPACEWVGRLEELERHRRSDCA
YEVIACPYHHHHHHRQQQQEPREERAEQVEEGEKEESYSSNSQSSSNSSS
TRKDSKRQTSEAKKTCAISTATTTARNCNSSENGCSYQAWRSRIEKEHVS
QCPHRPISCSLACGWTGKKMEEARHQGTSCPRVILFCQNKGCPASFVRAG
SGAHYDAECPFQPVPCVFAPHGCLVRPLRQAQAQHQAEAAVEHASLTASK
ISSLEAGIERMCGQFEDLRQRVEHSEKATRETIVSLVANPHPGVYLILYS
RIRRQWSQGGGIGLLGGRGGGREGTDDRLSQAIDLFLEGVVSDAIPSSPA
ASTPSFLPRLEEGREGGGEGGGEGGGKDGLMDMAAAAAVAAAALAEKMEG
GREGGREGGGVGGRDEGPALDAVKFFERLQQGGAGRSLFQTVNGGLRGGG
VRGGGGRGGGRGGEREGGGGRGRGRRAGHRQHGGEGEVTYIEEVEG*
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Synonyms
Publications