NO29G01310, NO29G01310 (gene) Nannochloropsis oceanica

Overview
NameNO29G01310
Unique NameNO29G01310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length822
Alignment locationchr29:414690..415511 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:414690..415511 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO29G01310 vs. NCBI_GenBank
Match: EWM21363.1 (hypothetical protein Naga_101560g2 [Nannochloropsis gaditana])

HSP 1 Score: 268.9 bits (686), Expect = 1.800e-68
Identity = 145/268 (54.10%), Postives = 175/268 (65.30%), Query Frame = 0
Query:    8 DPRKPKISLASGFLPPPRSTAKWTVESMGVSAAVSPSPSNSSFPCSPQSFILILEFVDKENMTQVLGRISAFSEGKVGKGKKSEAAAGETSKGYFGHNFPLTVLEDFVQVHG--GGGEGGKERGCGDGLTDGERDLLGICRKQELMGKXXXXXXXXXXXXXXXXXXXXXXXAASAYLIAYLKNDYATKQHELRHARFFLDEGYRSACLEAWARLSEKQKKYVSSFLSRLGYHEDVHVDEFQAFHLTEKANFWGIKVDVAWPASVVEGE 274
            DP  PK  L SG LPPP S  KWT+E + V      S S SS  C+ ++ +L LEF DK +MT +LGRISAFSEGK  KG KSEA AG+ S+GY+GHNFPLTVLEDF Q+ G  GG  G +       L  GE+DL+ +C+K  LM K                       A+S+YLIA+LK+D  T+QHEL HAR+FLD  YR ACL AW  LSEK + Y+S+FLSRLGYHE VH DEFQAF LTEKANFWG+++DVAWP  +  GE
Sbjct:   22 DPGHPKKVLCSGGLPPPFSACKWTLEELLVKQREPISSSASS--CTSRALLLTLEFADKRSMTHMLGRISAFSEGKANKGLKSEAKAGDASRGYYGHNFPLTVLEDFSQIQGASGGKNGARXXXXXXXLARGEQDLVDLCQKLGLMKK--TKGDGPRGSKGHGALGGKGGQASSSYLIAHLKHDLGTRQHELCHARYFLDPTYRQACLTAWEALSEKHRDYLSAFLSRLGYHEAVHADEFQAFALTEKANFWGVRIDVAWPDVIGGGE 285          
BLAST of NO29G01310 vs. NCBI_GenBank
Match: ARF09911.1 (hypothetical protein Indivirus_5_34 [Indivirus ILV1])

HSP 1 Score: 80.1 bits (196), Expect = 1.200e-11
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 0
Query:  181 YLIAYLKNDYATKQHELRHARFFLDEGYRSACLEAWARLSEKQKKYVSSFLSRLGYHEDVHVDEFQAF----HLTEKANFWGI 260
            Y+IAY++ND  TKQHEL HA+++ D  YR+   + W  LS K++  +++ L+ +GY E+ H+DEFQA+     L +  NFW I
Sbjct:   66 YVIAYIENDQHTKQHELYHAKYYFDTKYRNKVNKLWNSLSCKKRNEITAILNNMGYREEFHLDEFQAYLYSEPLRKNKNFWNI 148          
BLAST of NO29G01310 vs. NCBI_GenBank
Match: XP_002957910.1 (hypothetical protein VOLCADRAFT_107854 [Volvox carteri f. nagariensis] >EFJ41046.1 hypothetical protein VOLCADRAFT_107854 [Volvox carteri f. nagariensis])

HSP 1 Score: 79.0 bits (193), Expect = 2.600e-11
Identity = 37/85 (43.53%), Postives = 59/85 (69.41%), Query Frame = 0
Query:  181 YLIAYLKNDYATKQHELRHARFFLDEGYRSACLEAWAR-LSEKQKKYVSSFLSRLGYHEDVHVDEFQAFHLTEKANFWGIKVDVA 265
            Y+IA L+ D  + +HE+ HAR++LD  YR   ++ W+R L+  Q+  +++FL+RL Y    HVDEFQA+ +TEK+NF+G+ +  A
Sbjct:  122 YVIATLEGDAHSIRHEMCHARYYLDPSYRDTVMQVWSRSLASAQRDAITAFLNRLKYDTVAHVDEFQAYLVTEKSNFFGMDLTEA 206          
BLAST of NO29G01310 vs. NCBI_GenBank
Match: XP_001697884.1 (predicted protein [Chlamydomonas reinhardtii])

HSP 1 Score: 71.6 bits (174), Expect = 4.200e-9
Identity = 35/80 (43.75%), Postives = 55/80 (68.75%), Query Frame = 0
Query:  181 YLIAYLKNDYATKQHELRHARFFLDEGYRSACLEAW-ARLSEKQKKYVSSFLSRLGYHEDVHVDEFQAFHLTEKANFWGI 260
            Y+IA L  D  + +HE+ HAR++LD  YR+   + W   L+ +Q++ V +FL+RL Y   VH DE+QA+ +TEK+NF+G+
Sbjct:  118 YVIATLDGDAHSIRHEMCHARYYLDPPYRTTVAQVWEGALTPQQRESVCAFLTRLKYDPCVHEDEWQAYLVTEKSNFFGM 197          
BLAST of NO29G01310 vs. NCBI_GenBank
Match: PNW71643.1 (hypothetical protein CHLRE_16g662950v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 71.6 bits (174), Expect = 4.200e-9
Identity = 35/80 (43.75%), Postives = 55/80 (68.75%), Query Frame = 0
Query:  181 YLIAYLKNDYATKQHELRHARFFLDEGYRSACLEAW-ARLSEKQKKYVSSFLSRLGYHEDVHVDEFQAFHLTEKANFWGI 260
            Y+IA L  D  + +HE+ HAR++LD  YR+   + W   L+ +Q++ V +FL+RL Y   VH DE+QA+ +TEK+NF+G+
Sbjct:  118 YVIATLDGDAHSIRHEMCHARYYLDPPYRTTVAQVWEGALTPQQRESVCAFLTRLKYDPCVHEDEWQAYLVTEKSNFFGM 197          
BLAST of NO29G01310 vs. NCBI_GenBank
Match: KXZ52450.1 (hypothetical protein GPECTOR_9g494 [Gonium pectorale])

HSP 1 Score: 69.3 bits (168), Expect = 2.100e-8
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 0
Query:  181 YLIAYLKNDYATKQHELRHARFFLDEGYRSACLEAWAR-LSEKQKKYVSSFLSRLGYHEDVHVDEFQAFHLTEKANFWGIKVDVA 265
            YLIA L  D  + +HE+ HAR+ L   YR      W   L+  Q+  +++FL+RL Y   VH+DEFQA+ +TEK NF+G+ +  A
Sbjct:   99 YLIATLDGDAHSIRHEMCHARYHLQPEYRDTVQRVWTECLAAAQRDAITAFLNRLKYDAVVHLDEFQAYLVTEKPNFFGMDLGEA 183          
BLAST of NO29G01310 vs. NCBI_GenBank
Match: KNE59785.1 (hypothetical protein AMAG_05247 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 64.3 bits (155), Expect = 6.700e-7
Identity = 72/267 (26.97%), Postives = 108/267 (40.45%), Query Frame = 0
Query:    1 MGSSGTPDPRKPKISLASGFLPPPR------STAKWTVESMGVSAAVSPSPSN------SSFPCSPQSFILILEFVDKENMTQVLGRISAFSEGKVGKGKKSEA---AAGETSKG----YFGHNFPLTVLEDFVQVHGGGGEGGKERGCGDGLTDGERDLLGICRKQELMGKXXXXXXXXXXXXXXXXXXXXXXXAASAYLIAYLKNDYATKQHELRHARFFLDEG-YRSACLEAWARLSEKQKKYVSSFLSRLGYHEDVHVDEFQA 248
            M     P   K K  +A+   PP +      +T  +T + +      +P P++      +  P S +  +L++   DK  +  +L R S F E    + +  +A   AA +  +G    Y+GHNFPL  L  F+         G  RG   G T   R L    +     G+                        A +YL+ ++  D  T QHEL HA +  + G YR AC  A A L +  +  V ++L   GY E V  DEFQA
Sbjct:    1 MARKPAPGSGKTKPGVAAQQQPPAKGAKPTAATTTFTDQQLAPYLLPNPPPNDLNECQIAYHPASDRRLVLVVA-KDKATLDALLLRASIFYENPDLQNQYLDATQFAAAQAERGKPFTYYGHNFPLASLAKFLM---AASNAGGARGLTAGETYLVRTLTTKIKALSTSGR----------------SGPTVPTLADSYLVGWVNGDTPTFQHELHHAWYHFNAGEYRMACDAALASLDQVVRLQVRAYLRGCGYCEAVWADEFQA 247          
The following BLAST results are available for this feature:
BLAST of NO29G01310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM21363.11.800e-6854.10hypothetical protein Naga_101560g2 [Nannochloropsi... [more]
ARF09911.11.200e-1143.37hypothetical protein Indivirus_5_34 [Indivirus ILV... [more]
XP_002957910.12.600e-1143.53hypothetical protein VOLCADRAFT_107854 [Volvox car... [more]
XP_001697884.14.200e-943.75predicted protein [Chlamydomonas reinhardtii][more]
PNW71643.14.200e-943.75hypothetical protein CHLRE_16g662950v5 [Chlamydomo... [more]
KXZ52450.12.100e-842.35hypothetical protein GPECTOR_9g494 [Gonium pectora... [more]
KNE59785.16.700e-726.97hypothetical protein AMAG_05247 [Allomyces macrogy... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR079ngnoR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01310.1NO29G01310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601506gene_8306Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101560g2gene9057Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01310.1NO29G01310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01310 ID=NO29G01310|Name=NO29G01310|organism=Nannochloropsis oceanica|type=gene|length=822bp
ATGGGAAGCAGCGGCACCCCAGACCCGCGCAAGCCCAAGATTTCTCTTGC
CAGCGGCTTCCTTCCCCCACCACGAAGCACAGCCAAATGGACCGTAGAGA
GCATGGGTGTCAGTGCTGCTGTATCGCCCTCTCCCTCCAATTCCTCCTTC
CCCTGCAGTCCTCAATCCTTTATTTTGATCTTGGAATTCGTAGACAAGGA
AAATATGACTCAGGTCTTGGGGCGGATCAGTGCCTTCAGTGAAGGCAAGG
TTGGGAAGGGCAAGAAAAGTGAAGCAGCTGCAGGGGAGACCAGCAAAGGA
TATTTCGGACACAATTTTCCCCTGACCGTCCTGGAGGATTTTGTTCAAGT
GCACGGAGGAGGAGGGGAAGGAGGAAAGGAGAGAGGGTGTGGAGATGGTT
TGACGGACGGTGAGCGGGACCTGCTAGGGATATGTCGGAAGCAGGAATTG
ATGGGCAAAGGAGAGGGAAAAGGGGGAGGAGGCGGAGGAGGGAGCAAGAA
AGGCGGCGGTGGAAGAGGAAGATGTCTAGCGGCCTCTGCCTACTTGATCG
CATATTTAAAGAACGACTACGCCACCAAGCAGCATGAGCTGCGGCATGCA
CGCTTTTTCCTGGACGAGGGCTACCGGTCGGCGTGTCTAGAGGCTTGGGC
TCGGCTGTCGGAGAAGCAAAAAAAGTACGTGTCCTCCTTTCTATCGCGGC
TCGGGTACCATGAAGATGTGCACGTGGATGAGTTCCAGGCGTTTCATTTA
ACGGAGAAGGCGAATTTTTGGGGGATCAAGGTGGACGTGGCCTGGCCGGC
GTCGGTGGTGGAGGGGGAGTGA
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protein sequence of NO29G01310.1

>NO29G01310.1-protein ID=NO29G01310.1-protein|Name=NO29G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MGSSGTPDPRKPKISLASGFLPPPRSTAKWTVESMGVSAAVSPSPSNSSF
PCSPQSFILILEFVDKENMTQVLGRISAFSEGKVGKGKKSEAAAGETSKG
YFGHNFPLTVLEDFVQVHGGGGEGGKERGCGDGLTDGERDLLGICRKQEL
MGKGEGKGGGGGGGSKKGGGGRGRCLAASAYLIAYLKNDYATKQHELRHA
RFFLDEGYRSACLEAWARLSEKQKKYVSSFLSRLGYHEDVHVDEFQAFHL
TEKANFWGIKVDVAWPASVVEGE*
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Synonyms
Publications