NO29G01250, NO29G01250 (gene) Nannochloropsis oceanica

Overview
NameNO29G01250
Unique NameNO29G01250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1578
Alignment locationchr29:402245..403822 +

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Properties
Property NameValue
DescriptionAcyl-lipid omega-13 desaturase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:402245..403822 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036400Cyt_B5-like_heme/steroid_sf
IPR001199Cyt_B5-like_heme/steroid-bd
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO29G01250 vs. NCBI_GenBank
Match: EWM21334.1 (hypothetical protein Naga_100075g9 [Nannochloropsis gaditana])

HSP 1 Score: 402.5 bits (1033), Expect = 2.000e-108
Identity = 212/272 (77.94%), Postives = 237/272 (87.13%), Query Frame = 0
Query:  113 VARLRELTVGTDRWTALLAALWALLFLALVVNKQELWVVLAGLVAYACFCFMLDVVAIPPYWNGPLKANQTARLSNGLVCIAHSLAMGLAALFGASAILKLTMTCGFLLFDLWDKTWKRLYTSPPYRYTRGIPYALQGATTLVLSITAICKGFPLNADLLVVLPAFHLLSESIHDLVGLFALECSGILFTTQMLETVLVFPARLLPHAALLAWHLLSIYSSAPSSLN-ASLPPSSPSGEVLASWWATRVMTTLLLMLNASNVTSLFWPAFLR 384
            V+RLR L +GTDRWTALL ALWALLFLALVVNKQELWVVLAGLVAYACFCF+LDVVAIPP W+GPLKA +TARLSN LVCIAH+LAMG AALFGASAILKLTMTCGFLLFDLWDKTWKRLYTSPPYRYTRGIPYALQGATTLVLSITAICKG P+NADLLV +PA HLL ES+HDL  +FA E +  L   ++ ETV++FPARLLPHA LL  H+L+I+  A S+L  AS+PPS+    VL++WWATRVMT LL+MLNASN+ SLFWPAFLR
Sbjct:   89 VSRLRGLALGTDRWTALLVALWALLFLALVVNKQELWVVLAGLVAYACFCFLLDVVAIPPIWDGPLKAKETARLSNSLVCIAHALAMGFAALFGASAILKLTMTCGFLLFDLWDKTWKRLYTSPPYRYTRGIPYALQGATTLVLSITAICKGVPINADLLVGIPAAHLLVESVHDLTRMFASERAPPLGLARVTETVVLFPARLLPHALLLVSHILTIH--ATSALRCASIPPSTL--PVLSTWWATRVMTVLLVMLNASNLASLFWPAFLR 356          
BLAST of NO29G01250 vs. NCBI_GenBank
Match: XP_005852476.1 (solute carrier family 35 member b1 [Nannochloropsis gaditana CCMP526] >EKU23356.1 solute carrier family 35 member b1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 92.8 bits (229), Expect = 3.400e-15
Identity = 47/81 (58.02%), Postives = 55/81 (67.90%), Query Frame = 0
Query:  443 GRAYDLEAFLHLHPGGAHALSLGQGRDCTALFESYHPFTRKHKLVLGKYRVEVEEEVLDQYCVARKEGGKGGGARGRKEWE 524
            GR Y +E       GG+HAL LGQGRDCTALFESYHPFT +H+ +L K+RV VEE VLD YC+       GGGARG+   E
Sbjct:  390 GREYYIEGH-----GGSHALRLGQGRDCTALFESYHPFTERHRQILAKHRVAVEETVLDAYCL-------GGGARGQGRGE 458          
BLAST of NO29G01250 vs. NCBI_GenBank
Match: XP_002183026.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45244.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >AFQ33496.1 palmitoyl-CoA delta 9-desaturase [Phaeodactylum tricornutum])

HSP 1 Score: 87.8 bits (216), Expect = 1.100e-13
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 0
Query:  437 LLWYVHGRAYDLEAFLHLHPGGAHALSLGQGRDCTALFESYHPFTRKHKLVLGKYRVEVE 497
            LLW +HG  YDL  ++  HPGG  A+ LG+GRDCTALFESYHPFT +H+ VL K+RV ++
Sbjct:   16 LLWMIHGNYYDLHTYVSRHPGGKEAILLGRGRDCTALFESYHPFTSQHRRVLEKHRVTID 75          
BLAST of NO29G01250 vs. NCBI_GenBank
Match: GAX16474.1 (acyl-lipid (8-3)-desaturase [Fistulifera solaris])

HSP 1 Score: 86.3 bits (212), Expect = 3.100e-13
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 0
Query:  438 LWYVHGRAYDLEAFLHLHPGGAHALSLGQGRDCTALFESYHPFTRKHKLVLGKYRV 494
            LW + G  YDL  ++ LHPGG  A+ LG+GRDCTALFESYHPFT++H+ VL KYR+
Sbjct:  201 LWTIRGEQYDLNEYISLHPGGKEAILLGRGRDCTALFESYHPFTQQHETVLQKYRI 256          
BLAST of NO29G01250 vs. NCBI_GenBank
Match: GAX19479.1 (acyl-lipid (7-3)-desaturase [Fistulifera solaris])

HSP 1 Score: 84.0 bits (206), Expect = 1.600e-12
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 0
Query:  437 LLWYVHGRAYDLEAFLHLHPGGAHALSLGQGRDCTALFESYHPFTRKHKLVLGKYRV 494
            +LW + G  YDL  ++  HPGG  A+ LG+GRDCTALFESYHPFT++H+ VL KYR+
Sbjct:  200 MLWTIRGEQYDLNDYISHHPGGKEAILLGRGRDCTALFESYHPFTQQHETVLQKYRI 256          
BLAST of NO29G01250 vs. NCBI_GenBank
Match: EWM29412.1 (Cytochrome b5, heme-binding site [Nannochloropsis gaditana])

HSP 1 Score: 81.3 bits (199), Expect = 1.000e-11
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 0
Query:  438 LWYVHGRAYDLEAFLHLHPGGAHALSLGQGRDCTALFESYHPFT-RKHKLVLGKYRVEVEEEVLDQYCVARKEG 511
            LWY+HGRAYDL  F++ HPGG   L   QGRDCTALFE++HPFT R  KL+     V+V  ++L + C    +G
Sbjct:   67 LWYIHGRAYDLTDFINKHPGGPTVLLNTQGRDCTALFEAFHPFTDRPAKLLAKMKEVKVSPDILAEKCTDISQG 140          
BLAST of NO29G01250 vs. NCBI_GenBank
Match: OLQ06011.1 (Delta(5) fatty acid desaturase B [Symbiodinium microadriaticum])

HSP 1 Score: 79.3 bits (194), Expect = 3.800e-11
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 0
Query:  438 LWYVHGRAYDLEAFLHLHPGGAHALSLGQGRDCTALFESYHPFTRKHKLVLGKYRV 494
            LWY+HG +YDL  F+  HPGG  A+  G+GRDCTALFESYHP+  KH+ VL  + V
Sbjct:  177 LWYIHGNSYDLHDFVDKHPGGRFAILTGRGRDCTALFESYHPWNDKHRKVLKAHGV 232          
BLAST of NO29G01250 vs. NCBI_GenBank
Match: XP_014156428.1 (hypothetical protein SARC_05199 [Sphaeroforma arctica JP610] >KNC82526.1 hypothetical protein SARC_05199 [Sphaeroforma arctica JP610])

HSP 1 Score: 75.1 bits (183), Expect = 7.300e-10
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 0
Query:  438 LWYVHGRAYDLEAFLHLHPGGAHALSLGQGRDCTALFESYHPFTRKHKLVLGKYRVEVEEEVLD 502
            +WY+HG+AYD   F+  HPGG  A+ +GQGRDCT LFESYH F    KL L KY ++ E  + D
Sbjct:   44 VWYLHGKAYDFTDFVKRHPGGEKAILIGQGRDCTELFESYHTFLPSDKL-LAKYALDKEGSLGD 106          
BLAST of NO29G01250 vs. NCBI_GenBank
Match: XP_002951536.1 (hypothetical protein VOLCADRAFT_92130 [Volvox carteri f. nagariensis] >EFJ47347.1 hypothetical protein VOLCADRAFT_92130 [Volvox carteri f. nagariensis])

HSP 1 Score: 74.3 bits (181), Expect = 1.200e-9
Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = 0
Query:  439 WYVHGRAYDLEAFLHLHPGGAHALSLGQGRDCTALFESYHPFTRKHKLVLGKYRVEVEEEVL 501
            W +HG+AYDL +++  HPGG  A+ LG+GRDCT LFE YH    KH  VL ++R+ +    L
Sbjct:   21 WVIHGQAYDLASYVAKHPGGVDAILLGRGRDCTELFEQYHVLNNKHLRVLERFRISLPSSKL 82          
BLAST of NO29G01250 vs. NCBI_GenBank
Match: ETO19641.1 (hypothetical protein RFI_17588 [Reticulomyxa filosa])

HSP 1 Score: 73.6 bits (179), Expect = 2.100e-9
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 0
Query:  439 WYVHGRAYDLEAFLHLHPGGAHALSLGQGRDCTALFESYHPFTRKHKLVLGKYRVEVEEEVLDQY 504
            WY+HG+AYD  AF   HPGG  A+ LG+GRDCTALFESYH +      +L KY  E+ E +   Y
Sbjct:  195 WYLHGKAYDFSAFATRHPGGQQAIFLGRGRDCTALFESYHTYLPSSD-ILAKY--EIPEGIQSSY 256          
The following BLAST results are available for this feature:
BLAST of NO29G01250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21334.12.000e-10877.94hypothetical protein Naga_100075g9 [Nannochloropsi... [more]
XP_005852476.13.400e-1558.02solute carrier family 35 member b1 [Nannochloropsi... [more]
XP_002183026.11.100e-1360.00predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX16474.13.100e-1362.50acyl-lipid (8-3)-desaturase [Fistulifera solaris][more]
GAX19479.11.600e-1259.65acyl-lipid (7-3)-desaturase [Fistulifera solaris][more]
EWM29412.11.000e-1151.35Cytochrome b5, heme-binding site [Nannochloropsis ... [more]
OLQ06011.13.800e-1158.93Delta(5) fatty acid desaturase B [Symbiodinium mic... [more]
XP_014156428.17.300e-1053.13hypothetical protein SARC_05199 [Sphaeroforma arct... [more]
XP_002951536.11.200e-948.39hypothetical protein VOLCADRAFT_92130 [Volvox cart... [more]
ETO19641.12.100e-952.31hypothetical protein RFI_17588 [Reticulomyxa filos... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005253NSK005253Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01250.1NO29G01250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532233gene_8301Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100075g9gene9083Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01250.1NO29G01250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01250 ID=NO29G01250|Name=NO29G01250|organism=Nannochloropsis oceanica|type=gene|length=1578bp
ATGGTGCTCGGGGCCTTGTTGCGGCGTCGACGGCCGGCTCAAACAACACG
CACCAGCAGTACCTGCTGCACGTCGCCGCCTATCGCTTCGCCACGCAGCA
GCAGCAGCAGCAGCGGTGGCGGATCTGGTGTACAGCAACAGAAGGAGGAC
TTGGAGATGGTACGGACTGTGATATCAGGATTGCCAAAGGAGTTCGAGGA
GCTCTCGAAAATCCCAGCAGCAGCAGCAGCAGCAGGTGCGGAGCTCAGCA
ACGGTAGCATAGTAGGAAGGATCCAACCATCCCCCTCCTCCTCCTCTGCC
GCCGCAGCCGCCGCAGCAGCTGAAGAGGAGGCCTTGGTGGCTCGGTTGAG
GGAGTTGACGGTGGGCACAGATCGGTGGACGGCACTTTTGGCGGCGTTGT
GGGCTCTGCTGTTCTTGGCGCTCGTCGTGAACAAGCAGGAGCTCTGGGTG
GTGCTAGCGGGACTGGTCGCCTACGCCTGTTTCTGCTTCATGCTGGACGT
GGTGGCCATCCCCCCGTATTGGAACGGGCCGCTCAAGGCGAATCAGACCG
CCCGCTTGTCGAATGGCCTGGTGTGCATCGCGCATTCTTTGGCCATGGGC
CTCGCGGCCCTCTTCGGGGCTTCTGCCATCCTGAAACTCACCATGACATG
CGGCTTCCTCCTCTTCGACCTCTGGGACAAGACCTGGAAACGCCTTTACA
CCTCTCCCCCCTACCGATACACCCGCGGGATCCCCTACGCCCTCCAGGGG
GCCACCACCCTTGTACTCTCCATCACCGCCATCTGCAAGGGCTTCCCTCT
CAACGCCGACCTCCTCGTAGTCCTTCCAGCCTTTCACCTCCTCTCTGAAT
CCATCCATGACCTCGTTGGTCTCTTCGCTCTTGAGTGCTCTGGTATTCTC
TTCACCACCCAAATGCTCGAGACGGTCCTCGTCTTCCCCGCCCGCCTCCT
CCCTCACGCCGCCCTCCTCGCCTGGCACCTCCTGTCCATCTACTCCTCCG
CCCCTTCCTCCCTCAACGCCTCCCTCCCCCCGTCCTCCCCGTCGGGAGAA
GTGCTGGCTAGCTGGTGGGCAACAAGGGTGATGACTACCCTGCTGCTCAT
GTTGAATGCTTCGAATGTCACGTCTCTTTTTTGGCCCGCCTTCCTCCGTG
CGTGGATCCTGACACACCATCAACAGCAACAACAAAAACAGCAGCAGCAG
CAGCAGCAGCAGCAACAACAACAACAACAACAGCCACAACGAAAAATACT
CTCCTCCATTCCATCCTCCTCCTCCATCACAACCATCCCTCCCTCCGTCC
CTCCCTCCCTCCTTTGGTACGTCCATGGGAGGGCCTACGACCTCGAAGCT
TTCCTCCACCTCCATCCAGGTGGAGCTCACGCTTTAAGCCTGGGACAAGG
GAGGGATTGCACGGCATTGTTCGAGAGCTACCATCCCTTTACCCGAAAGC
ATAAACTGGTGCTGGGGAAATACCGGGTGGAGGTGGAGGAAGAGGTGCTT
GACCAGTATTGCGTGGCCAGGAAGGAGGGAGGGAAAGGGGGGGGGGCTCG
AGGAAGGAAGGAGTGGGAGAAGGAGTGA
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protein sequence of NO29G01250.1

>NO29G01250.1-protein ID=NO29G01250.1-protein|Name=NO29G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=526bp
MVLGALLRRRRPAQTTRTSSTCCTSPPIASPRSSSSSSGGGSGVQQQKED
LEMVRTVISGLPKEFEELSKIPAAAAAAGAELSNGSIVGRIQPSPSSSSA
AAAAAAAEEEALVARLRELTVGTDRWTALLAALWALLFLALVVNKQELWV
VLAGLVAYACFCFMLDVVAIPPYWNGPLKANQTARLSNGLVCIAHSLAMG
LAALFGASAILKLTMTCGFLLFDLWDKTWKRLYTSPPYRYTRGIPYALQG
ATTLVLSITAICKGFPLNADLLVVLPAFHLLSESIHDLVGLFALECSGIL
FTTQMLETVLVFPARLLPHAALLAWHLLSIYSSAPSSLNASLPPSSPSGE
VLASWWATRVMTTLLLMLNASNVTSLFWPAFLRAWILTHHQQQQQKQQQQ
QQQQQQQQQQQPQRKILSSIPSSSSITTIPPSVPPSLLWYVHGRAYDLEA
FLHLHPGGAHALSLGQGRDCTALFESYHPFTRKHKLVLGKYRVEVEEEVL
DQYCVARKEGGKGGGARGRKEWEKE*
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Synonyms
Publications