NO29G01240, NO29G01240 (gene) Nannochloropsis oceanica

Overview
NameNO29G01240
Unique NameNO29G01240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2001
Alignment locationchr29:399656..401656 +

Link to JBrowse

Properties
Property NameValue
DescriptionExosome complex component RRP45
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:399656..401656 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036345ExoRNase_PH_dom2_sf
IPR020568Ribosomal_S5_D2-typ_fold
IPR015847ExoRNase_PH_dom2
IPR001247ExoRNase_PH_dom1
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0000178exosome (RNase complex)
Homology
BLAST of NO29G01240 vs. NCBI_GenBank
Match: XP_005854866.1 (exosome complex component RRP45 [Nannochloropsis gaditana CCMP526] >EKU21492.1 exosome complex component RRP45 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 557.8 bits (1436), Expect = 4.300e-155
Identity = 292/413 (70.70%), Postives = 323/413 (78.21%), Query Frame = 0
Query:    1 MSVIKQGEDMSLNERAFILTALKDSEFRADGRTPLDTRPLRVTYARAEGQASAEIQLGKTRVLTVVTSELTPPYPDRPTEGFLNLNIEYSPMATLGIDNARSNPTLVEVDRVIERCLRQSRALDTEALCVIAGNKVWSLRCDVRILDDCGNVVDAACLATVAALLHFRLPEVTVLTG-------DSINXXXXXXXXXXXXXGMASASVIVHHSFEKEPSALPIHHVPICVTFGLFSDSPVLAAVDPTHREEAVMGGRLTYCINVHKELCALQKIGGLPLPPSSLVEWAEVASEKVSEWHALLQNSLEAADRQAKEERLKFVRGTASV--------DVLPARAEAEIVAGGXXXXXXXXXXXXPMPAGIDHLAFAELHVPIKVREGSEKPPVNVEEETRSLSLLEQAAMEAERY 399
            MSVIKQGEDMS+NER FILTALKD   RADGRTP DTR LRVTYARAEGQA+AEIQLGKTRVLTVVTSELTPPYPDRP EGFLNLN+EYSPMATLGIDNAR+NPTLVEVDRVIERCLRQSRALDTEALCVIAG+KVWSLRCDVRILDD GNVVDAACLATVAAL+HFRLPEVTVLTG        S N             G+  ASV+VHHSFEKEPSALPIHHVPICVTF LF+ SP+++ +DPT REE VMGGR+T+ INVH+E+CA+QKIGGL L P+SL   AE+A EKV +WH+LLQ SLEAAD QAK ERL+ VRGTAS+        D    R E E+  G                    HL FAELH PIKVREGSEK P++ EEETR+LS+LEQAA++AE Y
Sbjct:    1 MSVIKQGEDMSINEREFILTALKDENCRADGRTPADTRELRVTYARAEGQATAEIQLGKTRVLTVVTSELTPPYPDRPAEGFLNLNVEYSPMATLGIDNARTNPTLVEVDRVIERCLRQSRALDTEALCVIAGSKVWSLRCDVRILDDAGNVVDAACLATVAALMHFRLPEVTVLTGGSDERSNSSANDGESSVGRVRGGGGLGHASVVVHHSFEKEPSALPIHHVPICVTFVLFNTSPIVSVIDPTEREELVMGGRITFSINVHREVCAMQKIGGLALAPTSLARLAEIAMEKVGDWHSLLQTSLEAADSQAKAERLRCVRGTASMHVRRGALGDAEGERGEKEVEGGADAPTSHIETA---------HLDFAELHAPIKVREGSEKAPIDEEEETRTLSVLEQAALDAEDY 404          
BLAST of NO29G01240 vs. NCBI_GenBank
Match: EWM21351.1 (exosome complex exonuclease rrp45 [Nannochloropsis gaditana])

HSP 1 Score: 532.7 bits (1371), Expect = 1.500e-147
Identity = 281/406 (69.21%), Postives = 313/406 (77.09%), Query Frame = 0
Query:    1 MSVIKQGEDMSLNERAFILTALKDSEFRADGRTPLDTRPLRVTYARAEGQASAEIQLGKTRVLTVVTSELTPPYPDRPTEGFLNLNIEYSPMATLGIDNARSNPTLVEVDRVIERCLRQSRALDTEALCVIAGNKVWSLRCDVRILDDCGNVVDAACLATVAALLHFRLPEVTVLTGDSINXXXXXXXXXXXXXGMASASVIVHHSFEKEPSALPIHHVPICVTFGLFSDSPVLAAVDPTHREEAVMGGRLTYCINVHKELCALQKIGGLPLPPSSLVEWAEVASEKVSEWHALLQNSLEAADRQAKEERLKFVRGTASV--------DVLPARAEAEIVAGGXXXXXXXXXXXXPMPAGIDHLAFAELHVPIKVREGSEKPPVNVEEETRSLSLLEQAAMEAERY 399
            MSVIKQGEDMS+NER FILTALKD   RADGRTP DTR LRVTYARAEGQA+AEIQLGKTRVLTVVTSELTPPYPDRP EGFLNLN+EYSPMATLGIDNAR+NPTLVEVDRVIERCLRQSRALDTEALCVIAG+KVWSLRCDVRILDD GNVVDAACLATVAAL+HFRLPEVTVLTG S                   ++   +     EPSALPIHHVPICVTF LF+ SP+++ +DPT REE VMGGR+T+ INVH+E+CA+QKIGGL L P+SL   AE+A EKV +WH+LLQ SLEAAD QAK ERL+ VRGTAS+        D    R E E+  G                    HL FAELH PIKVREGSEKPP++ EEETR+LS+LEQAA++AE Y
Sbjct:    1 MSVIKQGEDMSINEREFILTALKDENCRADGRTPADTRELRVTYARAEGQATAEIQLGKTRVLTVVTSELTPPYPDRPAEGFLNLNVEYSPMATLGIDNARTNPTLVEVDRVIERCLRQSRALDTEALCVIAGSKVWSLRCDVRILDDAGNVVDAACLATVAALMHFRLPEVTVLTGGSDE----------------RSNSSANDGESSEPSALPIHHVPICVTFVLFNTSPIVSVIDPTEREELVMGGRITFSINVHREVCAMQKIGGLALAPTSLARLAEIAMEKVGDWHSLLQTSLEAADSQAKAERLRCVRGTASMHVRRGALGDAEGERGEKEVEGGADAPTSHIETA---------HLDFAELHAPIKVREGSEKPPIDEEEETRTLSVLEQAALDAEDY 381          
BLAST of NO29G01240 vs. NCBI_GenBank
Match: OAQ29751.1 (hypothetical protein K457DRAFT_485177 [Mortierella elongata AG-77])

HSP 1 Score: 245.0 bits (624), Expect = 6.100e-61
Identity = 135/293 (46.08%), Postives = 177/293 (60.41%), Query Frame = 0
Query:    9 DMSLNERAFILTALKDSEFRADGRTPLDTRPLRVTYARAEGQASAEIQLGKTRVLTVVTSELTPPYPDRPTEGFLNLNIEYSPMATLGIDNARSNPTLVEVDRVIERCLRQSRALDTEALCVIAGNKVWSLRCDVRILDDCGNVVDAACLATVAALLHFRLPEVTVLTGDSINXXXXXXXXXXXXXGMASASVIVHHSFEKEPSALPIHHVPICVTFGLFSDSPVLAAVDPTHREEAVMGGRLTYCINVHKELCALQKIGGLPLPPSSLVEWAEVASEKVSEWHALLQNSLEA 302
            D S NER F+L ALKD   R DGR   D R LR+T+    G  + E+QLG TRVL  V+ E+  PY D+PTEGFL  N E SPMA+   +  R     V V R+IE+ +R+SRALDTE LC++AG KVWS+R D+  LD  GN+VDAAC+A + ALLHFR P+VTV+  D                      V +H   ++ P  L IHH+PIC TF  F++   +  VDPT  EE V  G +T  +NVHKE+CAL K GG+P+    +++  +VA  KV+E  A +Q +LEA
Sbjct:    5 DPSTNEREFLLAALKDGA-RIDGRKFYDFRTLRLTFGAEYG--AVEVQLGNTRVLAKVSCEVIRPYTDKPTEGFLMFNTELSPMASAAFEVGRQTDEEVLVSRLIEKAMRRSRALDTEGLCIVAGEKVWSIRVDIHFLDHDGNLVDAACIAAITALLHFRRPDVTVVGED----------------------VTIHTLEQRNPVPLSIHHIPICTTFAFFNNGERM-VVDPTFLEEQVKEGDMTITLNVHKEVCALSKAGGIPMEIDQILQCTKVAVVKVAEITAQIQAALEA 271          
BLAST of NO29G01240 vs. NCBI_GenBank
Match: GAY02875.1 (exosome complex exonuclease RRP45-like protein [Pythium insidiosum])

HSP 1 Score: 242.3 bits (617), Expect = 4.000e-60
Identity = 142/410 (34.63%), Postives = 219/410 (53.41%), Query Frame = 0
Query:    1 MSVIKQGEDMSLNERAFILTALKDS-EFRADGRTPLDTRPLRVTYARAEGQASAEIQLGKTRVLTVVTSELTPPYPDRPTEGFLNLNIEYSPMATLGIDNARSNPTLVEVDRVIERCLRQSRALDTEALCVIAGNKVWSLRCDVRILDDCGNVVDAACLATVAALLHFRLPEVTVLTGDSINXXXXXXXXXXXXXGMASASVIVHHSFEKEPSALPIHHVPICVTFGLF-----SDSPVLAAVDPTHREEAVMGGRLTYCINVHKELCALQKIGGLPLPPSSLVEWAEVASEKVSEWHALLQNSLEAADRQAKEERLKFVRGTASVDV--LPARA----EAEIVAGGXXXXXXXXXXXXPMPAGIDHLAFAELHVPIKVREG--SEKPPVNVEEETRSLSLLEQAAMEAE 397
            M++ ++ + +S NERAF+  ++ D    R DGR  +  R +RV + R + Q+ AE+Q+G+TRV+  V  E+ PP+PDRPTEGFL+ N+E SPMA+   +  R +P  +E+ R+++R +R+ RALDTEAL ++AG KVWS+ C + ++D  GN++D   LA +AA++H+R PEV+V                        ++  V+   E     L +HH+PI ++F          +  +  +DPT REE +  G +T+  N  +ELCA+ KIGG  +  + ++  A +A+ +V+E    L+   E AD++A E R   +RG    DV  L A A     AEI  G                   +   F  LH PI +RE    E+    V    + L  LEQAA +AE
Sbjct:    1 MAIREEHDFLSENERAFLFHSIHDKPHIRPDGRELMQQRKIRVQFRRNDDQSQAEVQIGRTRVIANVHGEIVPPFPDRPTEGFLHFNVELSPMASQNFEVGRPSPLAIELARIVDRGIRECRALDTEALAIVAGEKVWSITCTIHVVDHGGNLIDCVSLAAIAAMMHYRRPEVSV----------------------QGSTTTVYRIDEHAAVPLSLHHIPISISFCFIERRDDDTAEPIVFMDPTDREERITDGSMTFTFNSFRELCAVHKIGGASISTTEVLRCANIAAARVAELTEFLKEEAEKADKEATERRRALLRGRDFADVSHLSAAAVKQERAEIEMG-------------------EMTDFKTLHAPIALREDPTQEETDAKVSSMAQLLESLEQAAADAE 369          
BLAST of NO29G01240 vs. NCBI_GenBank
Match: ORX94083.1 (hypothetical protein K493DRAFT_221945 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 240.4 bits (612), Expect = 1.500e-59
Identity = 128/295 (43.39%), Postives = 180/295 (61.02%), Query Frame = 0
Query:   11 SLNERAFILTALKDSEFRADGRTPLDTRPLRVTYARAEGQASAEIQLGKTRVLTVVTSELTPPYPDRPTEGFLNLNIEYSPMATLGIDNARSNPTLVEVDRVIERCLRQSRALDTEALCVIAGNKVWSLRCDVRILDDCGNVVDAACLATVAALLHFRLPEVTVLTGDSINXXXXXXXXXXXXXGMASASVIVHHSFEKEPSALPIHHVPICVTFGLFSDSPVLAAVDPTHREEAVMGGRLTYCINVHKELCALQKIGGLPLPPSSLVEWAEVASEKVSEWHALLQNSLEAADRQ 306
            S+NER F+L AL++   R DGR   D R ++++     GQ  AEIQLG+TRVL  V+ E+T PYPD+PTEGFL  N E SP+A+   +  R +   V + RVIE+ LR+SRA+DTE LC++AG KVWS+R D+  LD  GN++D AC+A ++ALLHFR P+VTV+                         V +H   E+ P  L IHH+PIC+TF  F D+  L  VDP   EE +  G +T  +N H+E+C L K GG+PL    +   +++A+ KV E   L+QN+L+++  Q
Sbjct:    8 SINERTFVLQALREGH-RIDGRGLYDFRNIKISLGPELGQ--AEIQLGRTRVLAKVSCEVTRPYPDKPTEGFLIFNTELSPLASPAFEIGRPSEEEVLISRVIEKALRRSRAIDTEGLCIVAGEKVWSIRVDIHFLDHEGNLIDCACIAAISALLHFRRPDVTVV----------------------GEEVTIHPVEERNPVPLSIHHIPICITFSFF-DNGELLVVDPNLLEEQLRTGDMTIAMNAHREMCTLSKAGGIPLDLEQIFRCSKIATVKVQEITELIQNALKSSTVQ 276          
BLAST of NO29G01240 vs. NCBI_GenBank
Match: XP_004335912.1 (3' exoribonuclease family, domain 1 domain containing protein [Acanthamoeba castellanii str. Neff] >ELR13899.1 3' exoribonuclease family, domain 1 domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 240.0 bits (611), Expect = 2.000e-59
Identity = 133/297 (44.78%), Postives = 187/297 (62.96%), Query Frame = 0
Query:    6 QGEDMSLNERAFILTALKDSEFRADGRTPLDTRPLRVTYARAEGQASAEIQLGKTRVLTVVTSELTPPYPDRPTEGFLNLNIEYSPMATLGID-NARSNPTLVEVDRVIERCLRQSRALDTEALCVIAGNKVWSLRCDVRILDDCGNVVDAACLATVAALLHFRLPEVTVLTGDSINXXXXXXXXXXXXXGMASASVIVHHSFEKEPSALPIHHVPICVTFGLFSDSPVLAAVDPTHREEAVMGGRLTYCINVHKELCALQKIGGLPLPPSSLVEWAEVASEKVSEWHALLQNSLEA 302
            +GE +SLNER F+L +L +   R DGR   D R L++++    G    E+QLG+TRV  VV  E+  PY DRPTEGF   N E+SPMA+   +  AR +   VEV R+IER LR SRA+DTEALC+ AG KVW+++ DV +LDD GN++DAA +ATV+ALLHFR P+V++ TGD+I                      VH   ++EP  L IHH+P+CVTF +F D   +  VDP  +EE  + GR+T   N H+ELC + K GG  LP ++LV+ +++A+ KV +    +Q+++ A
Sbjct:    9 KGEKLSLNEREFLLASLAEGR-RLDGRGLYDYRTLKISFPYQPGY--CEVQLGQTRVYVVVRCEVVEPYADRPTEGFFIFNTEFSPMASASFEVGARVSEEAVEVGRLIERSLRDSRAIDTEALCIRAGEKVWAVQIDVHVLDDGGNLIDAASIATVSALLHFRRPDVSI-TGDAIT---------------------VHSVADREPVPLSIHHLPLCVTFAVFGDGDQV-VVDPWFKEEQSLNGRVTLIHNQHRELCGVHKSGGPGLPLNTLVKCSKIAAVKVQDVIQAIQSAITA 279          
BLAST of NO29G01240 vs. NCBI_GenBank
Match: KFH72570.1 (exosome complex component RRP45 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 240.0 bits (611), Expect = 2.000e-59
Identity = 131/300 (43.67%), Postives = 181/300 (60.33%), Query Frame = 0
Query:   11 SLNERAFILTALKDSEFRADGRTPLDTRPLRVTYARAEGQASAEIQLGKTRVLTVVTSELTPPYPDRPTEGFLNLNIEYSPMATLGIDNARSNPTLVEVDRVIERCLRQSRALDTEALCVIAGNKVWSLRCDVRILDDCGNVVDAACLATVAALLHFRLPEVTVLTGDSINXXXXXXXXXXXXXGMASASVIVHHSFEKEPSALPIHHVPICVTFGLFSDSPVLAAVDPTHREEAVMGGRLTYCINVHKELCALQKIGGLPLPPSSLVEWAEVASEKVSEWHALLQNSLEAADRQAKEER 311
            S NER F+L ALKD   R DGR   D R LR+++    G  + E+QLG TRVL  V+ E+  PY D+PTEGFL  N E SPMA+   +  R     V V R+IE+ +R+SRALDTE LC++AG KVWS+R D+  LD  GN+VDAAC+A + ALLHFR P+VTV+                         V +H   ++ P  L IHH+PIC TF  F D+     VDPT+ EE +  G +T  +NVHKE+CA+ K GG+P+    +++ +++A  KV+E  A +Q++LEA  ++ +  R
Sbjct:    7 STNEREFVLAALKDGA-RIDGRKFYDFRTLRLSFGADYG--AVEVQLGNTRVLAKVSCEVIRPYADKPTEGFLVFNTELSPMASASFEVGRQTDEEVLVSRLIEKAMRRSRALDTEGLCIVAGEKVWSVRVDIHFLDHDGNLVDAACIAAITALLHFRRPDVTVV----------------------GEEVTIHTLEQRNPVPLSIHHIPICTTFAFF-DNGERMIVDPTYLEEQIKEGDMTLTLNVHKEVCAMSKAGGIPMEIDQILQCSKIAVIKVAEITAQIQSALEADAKKRQVSR 280          
BLAST of NO29G01240 vs. NCBI_GenBank
Match: XP_010246832.1 (PREDICTED: exosome complex component RRP45A-like isoform X1 [Nelumbo nucifera] >XP_010246833.1 PREDICTED: exosome complex component RRP45A-like isoform X1 [Nelumbo nucifera])

HSP 1 Score: 239.2 bits (609), Expect = 3.400e-59
Identity = 134/313 (42.81%), Postives = 192/313 (61.34%), Query Frame = 0
Query:   10 MSLNERAFILTALKDSEFRADGRTPLDTRPLRVTYARAEGQASAEIQLGKTRVLTVVTSELTPPYPDRPTEGFLNLNIEYSPMATLGIDNARSNPTLVEVDRVIERCLRQSRALDTEALCVIAGNKVWSLRCDVRILDDCGNVVDAACLATVAALLHFRLPEVTVLTGDSINXXXXXXXXXXXXXGMASASVIVHHSFEKEPSALPIHHVPICVTFGLFSDSPVLAAVDPTHREEAVMGGRLTYCINVHKELCALQKIGGLPLPPSSLVEWAEVASEKVSEWHALLQNSLEAADRQAKEERLKFVRGTASVDV 323
            M++NE+ FI TAL  S+ R DGR P D R L V + R +G  S+E+QLG+T V+  VTS+L  PY DRP EG L++  E+SPMA    +  R     VE+ R+I+R LR+SRA+DTE+LCV+AG  VWS+R D+ ILD+ GN+VDAA +A +AALL FR PE T+                    G     VI+H    KEP  L IHH+PI VTF  F D   +  +DPTH EEAVMGGR+T  +N + ++CA+QK GG  +  + +++   +AS K ++  + ++N++EA   ++   ++K      ++DV
Sbjct:   11 MTVNEKKFIETALL-SDLRVDGRRPFDYRRLTVKFGREDG--SSEVQLGQTHVMGFVTSQLVQPYRDRPNEGTLSIYTEFSPMADPSFEAGRPGEFAVELGRIIDRGLRESRAIDTESLCVLAGKLVWSIRVDLHILDNGGNLVDAANIAALAALLTFRRPECTL-------------------GGEDGQEVIIHPPEAKEPLPLIIHHLPIAVTFAFFGDGNTV-VIDPTHSEEAVMGGRMTATLNTNGDVCAVQKAGGEGVMQNVIMQCLRIASVKATDITSKIKNAVEAYKTESSLRKIKRHPSMVAIDV 300          
BLAST of NO29G01240 vs. NCBI_GenBank
Match: XP_010246834.1 (PREDICTED: exosome complex component RRP45A-like isoform X2 [Nelumbo nucifera])

HSP 1 Score: 239.2 bits (609), Expect = 3.400e-59
Identity = 134/313 (42.81%), Postives = 192/313 (61.34%), Query Frame = 0
Query:   10 MSLNERAFILTALKDSEFRADGRTPLDTRPLRVTYARAEGQASAEIQLGKTRVLTVVTSELTPPYPDRPTEGFLNLNIEYSPMATLGIDNARSNPTLVEVDRVIERCLRQSRALDTEALCVIAGNKVWSLRCDVRILDDCGNVVDAACLATVAALLHFRLPEVTVLTGDSINXXXXXXXXXXXXXGMASASVIVHHSFEKEPSALPIHHVPICVTFGLFSDSPVLAAVDPTHREEAVMGGRLTYCINVHKELCALQKIGGLPLPPSSLVEWAEVASEKVSEWHALLQNSLEAADRQAKEERLKFVRGTASVDV 323
            M++NE+ FI TAL  S+ R DGR P D R L V + R +G  S+E+QLG+T V+  VTS+L  PY DRP EG L++  E+SPMA    +  R     VE+ R+I+R LR+SRA+DTE+LCV+AG  VWS+R D+ ILD+ GN+VDAA +A +AALL FR PE T+                    G     VI+H    KEP  L IHH+PI VTF  F D   +  +DPTH EEAVMGGR+T  +N + ++CA+QK GG  +  + +++   +AS K ++  + ++N++EA   ++   ++K      ++DV
Sbjct:   11 MTVNEKKFIETALL-SDLRVDGRRPFDYRRLTVKFGREDG--SSEVQLGQTHVMGFVTSQLVQPYRDRPNEGTLSIYTEFSPMADPSFEAGRPGEFAVELGRIIDRGLRESRAIDTESLCVLAGKLVWSIRVDLHILDNGGNLVDAANIAALAALLTFRRPECTL-------------------GGEDGQEVIIHPPEAKEPLPLIIHHLPIAVTFAFFGDGNTV-VIDPTHSEEAVMGGRMTATLNTNGDVCAVQKAGGEGVMQNVIMQCLRIASVKATDITSKIKNAVEAYKTESSLRKIKRHPSMVAIDV 300          
BLAST of NO29G01240 vs. NCBI_GenBank
Match: XP_021881788.1 (ribosomal protein S5 domain 2-type protein [Lobosporangium transversale] >ORZ16853.1 ribosomal protein S5 domain 2-type protein [Lobosporangium transversale])

HSP 1 Score: 239.2 bits (609), Expect = 3.400e-59
Identity = 129/291 (44.33%), Postives = 177/291 (60.82%), Query Frame = 0
Query:   11 SLNERAFILTALKDSEFRADGRTPLDTRPLRVTYARAEGQASAEIQLGKTRVLTVVTSELTPPYPDRPTEGFLNLNIEYSPMATLGIDNARSNPTLVEVDRVIERCLRQSRALDTEALCVIAGNKVWSLRCDVRILDDCGNVVDAACLATVAALLHFRLPEVTVLTGDSINXXXXXXXXXXXXXGMASASVIVHHSFEKEPSALPIHHVPICVTFGLFSDSPVLAAVDPTHREEAVMGGRLTYCINVHKELCALQKIGGLPLPPSSLVEWAEVASEKVSEWHALLQNSLEA 302
            S NER F+L AL+D   R DGR   D R LR+++    G  + E+QLG TRVL  V+ E+  P+PD+PTEGFL  N E SPMA+   +  R     V V R+IE+ +++SRALDTE LC++AG KVWS+R D+  LD  GN+VDAAC+A + AL HFR P+VTV+  D                      V +H   ++ P  L IHH+PICVTF  F D+     VDPTH EE +  G +T  +NVHKE+CAL K GG+P+    +++ +++A  KV+E  A ++ +L A
Sbjct:    7 STNEREFVLAALRDGA-RIDGRNFYDFRTLRLSFGADYG--AVEVQLGNTRVLAKVSCEVIRPFPDKPTEGFLMFNTELSPMASPAFEVGRQTDEEVLVSRLIEKAMKRSRALDTEGLCIVAGEKVWSIRVDIHFLDHDGNLVDAACIAAITALQHFRRPDVTVVGED----------------------VTIHTLEQRNPVPLSIHHIPICVTFAFF-DNGNHVIVDPTHLEEQIKEGDMTITLNVHKEVCALSKAGGIPMELDQIIQCSKIAVIKVAEITAQIEAALAA 271          
The following BLAST results are available for this feature:
BLAST of NO29G01240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854866.14.300e-15570.70exosome complex component RRP45 [Nannochloropsis g... [more]
EWM21351.11.500e-14769.21exosome complex exonuclease rrp45 [Nannochloropsis... [more]
OAQ29751.16.100e-6146.08hypothetical protein K457DRAFT_485177 [Mortierella... [more]
GAY02875.14.000e-6034.63exosome complex exonuclease RRP45-like protein [Py... [more]
ORX94083.11.500e-5943.39hypothetical protein K493DRAFT_221945 [Basidiobolu... [more]
XP_004335912.12.000e-5944.783' exoribonuclease family, domain 1 domain contain... [more]
KFH72570.12.000e-5943.67exosome complex component RRP45 [Mortierella verti... [more]
XP_010246832.13.400e-5942.81PREDICTED: exosome complex component RRP45A-like i... [more]
XP_010246834.13.400e-5942.81PREDICTED: exosome complex component RRP45A-like i... [more]
XP_021881788.13.400e-5944.33ribosomal protein S5 domain 2-type protein [Lobosp... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005250NSK005250Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01240.1NO29G01240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|189419gene_8299Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100075g8gene9084Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01240.1NO29G01240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01240 ID=NO29G01240|Name=NO29G01240|organism=Nannochloropsis oceanica|type=gene|length=2001bp
AGGACCAGTAACCTCTCCTCCTGACCTGCCGTCCGCTAGCCTCGGCCTCC
TACCCATCCAAAGCAAGCGAGCAGATACTACTTCCCATACTGCCACTCCA
CTTTACATCTACCCGTAAATCACCATGTCCGTCATCAAACAAGGCGAGGA
CATGAGCCTCAATGAACGCGCCTTCATACTCACCGCCTTAAAGGATTCCG
AATTCAGAGCTGACGGCCGCACGCCCCTCGACACTCGCCCCCTTCGAGTC
ACCTATGCACGAGCTGAGGGTCAAGCCAGCGCCGAGATTCAATTAGGCAA
GACAAGGGTTCTGACGGTCGTGACTAGCGAGCTGACCCCTCCTTATCCTG
ACAGACCAACTGAAGGTTTTTTGAACTTAAATATTGAGTATTCACCTATG
GCGACATTGGGGATTGATAACGCCAGGAGTAATCCTACGTTAGTAGAGGT
CGATCGTGTTATTGAGAGATGTTTGAGGCAAAGTAGGGCGTTGGACACGG
AGGCTTTGTGTGTGATTGCTGGGAACAAGGTTTGGAGTTTGAGGTGTGAT
GTGAGGATCTTGGATGATTGTGGGAATGTGGTCGATGCTGCCTGTCTAGC
CACTGTTGCCGCCCTCCTCCACTTCCGCCTGCCTGAAGTGACTGTCTTAA
CTGGTGACAGTATCAACAGCATTAGTAGTAGTAGCAGCAGCAGCAAAGGC
GAAACAGGCATGGCCAGTGCTAGCGTGATCGTGCATCATTCTTTTGAGAA
GGAGCCGTCGGCCCTACCTATCCATCATGTCCCCATTTGCGTGACCTTCG
GTTTGTTCTCTGACTCTCCGGTGCTAGCCGCAGTAGACCCTACCCATCGC
GAAGAAGCCGTCATGGGTGGTAGGCTCACCTATTGCATAAATGTACACAA
GGAATTGTGTGCCTTGCAGAAAATTGGGGGGTTGCCACTTCCGCCCTCCA
GCCTAGTGGAGTGGGCGGAGGTCGCGTCGGAGAAGGTGAGTGAGTGGCAT
GCGCTGTTGCAAAACTCGCTGGAGGCAGCAGACAGACAGGCGAAGGAGGA
GAGATTGAAGTTTGTAAGGGGGACGGCGTCCGTGGACGTATTACCTGCAA
GAGCAGAGGCGGAAATCGTAGCGGGAGGAGGAGGAGAGGGAGGAAGAGGA
GGAGGGGAAGGAGGGCCGATGCCTGCGGGGATTGATCATTTGGCTTTTGC
GGAGTTGCACGTGCCAATCAAAGTGCGGGAGGGGTCAGAGAAGCCACCTG
TGAACGTGGAGGAAGAGACAAGAAGTTTGTCTCTGTTGGAGCAGGCGGCG
ATGGAAGCGGAGAGGTATAGGAAGGAGCAGGAGGAAGAGAAGGCGGGAGA
GAAAGTAGCTGCAGCGGCAGTAGCAGCAGCAGCAGCAACAGCAGCAGAAG
GAGGTGCGGCGACAGTAGCGGCAGATAACAGAGGAATGGACGTGGACGTT
GAAGAGGATGGAGTGGTGGGTGAAAAGAAGGAAGGAGGATTCAAGTCTAG
TAGCCCGTTAGGCAAGGCTGGGCAGGGTGGGGAACGAGGAGACACTGTAG
CGTCAAGAGGAGCAGCCGAGAGGAAGATGAGGAAGCAAGGGGGAAAGAAG
AAAGAGGATAGTGACGGTGAAGACGAGGAGGAGGAGGAGGAGACGGCCGT
GGTGATGATGTCTGAATTTGCAGAGGGAGACGACGACTCTGCAGCGGGAA
AAGGAGTAGGAGTAGGAGTAGGAGCAGCATCTCCAGGACAAGCAGCGGCA
TCTAAAGGCAGTGCATCCCTCGCTAGCCGACGAGCCAAGGTGACGCTCGA
AGATATGGAGAATGAGGAGGACGAGGATGACGGGGTAGGGGATGACTTGC
GGGCGGCTGTCAAGAAGCCCCGCATGAACAGAGGTGGTGAGAAGGCCCGT
GGTGCAATCAGCAAGGGCAAGGGCAAACAAGGAGGGAAGAGGTGAAGCCG
ATGACTTCGAAAGTACTGAGGATAAGAAGACATAACAGCTGAATGGAAAT
T
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protein sequence of NO29G01240.1

>NO29G01240.1-protein ID=NO29G01240.1-protein|Name=NO29G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=607bp
MSVIKQGEDMSLNERAFILTALKDSEFRADGRTPLDTRPLRVTYARAEGQ
ASAEIQLGKTRVLTVVTSELTPPYPDRPTEGFLNLNIEYSPMATLGIDNA
RSNPTLVEVDRVIERCLRQSRALDTEALCVIAGNKVWSLRCDVRILDDCG
NVVDAACLATVAALLHFRLPEVTVLTGDSINSISSSSSSSKGETGMASAS
VIVHHSFEKEPSALPIHHVPICVTFGLFSDSPVLAAVDPTHREEAVMGGR
LTYCINVHKELCALQKIGGLPLPPSSLVEWAEVASEKVSEWHALLQNSLE
AADRQAKEERLKFVRGTASVDVLPARAEAEIVAGGGGEGGRGGGEGGPMP
AGIDHLAFAELHVPIKVREGSEKPPVNVEEETRSLSLLEQAAMEAERYRK
EQEEEKAGEKVAAAAVAAAAATAAEGGAATVAADNRGMDVDVEEDGVVGE
KKEGGFKSSSPLGKAGQGGERGDTVASRGAAERKMRKQGGKKKEDSDGED
EEEEEETAVVMMSEFAEGDDDSAAGKGVGVGVGAASPGQAAASKGSASLA
SRRAKVTLEDMENEEDEDDGVGDDLRAAVKKPRMNRGGEKARGAISKGKG
KQGGKR*
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Synonyms
Publications