NO29G01210, NO29G01210 (gene) Nannochloropsis oceanica

Overview
NameNO29G01210
Unique NameNO29G01210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length452
Alignment locationchr29:395266..395717 +

Link to JBrowse

Properties
Property NameValue
DescriptionCysteine-rich pdz-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:395266..395717 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019367PDZ-binding_CRIPT
Homology
[Close]
BLAST of NO29G01210 vs. NCBI_GenBank
Match: EWM21354.1 (cysteine-rich pdz-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 127.5 bits (319), Expect = 2.600e-26
Identity = 66/113 (58.41%), Postives = 71/113 (62.83%), Query Frame = 0 
Query:    1 MVCDTCEKKLSKLCVPDKWKEGSRNVTG---ASAARSGGGPPGSINKXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVMDVQRHYCNGCAYKKAICAMCGKKVGNTKLYKMSSK 111
            MVCD CEKKL KLCVPDKWKEGSRNVTG        +  GP  S+NK                            R+MDVQRHYCNGCAYKKAICAMCG+KVG+TKLYKMSSK
Sbjct:    1 MVCDACEKKLGKLCVPDKWKEGSRNVTGGKDGGRVPTSSGPSASLNK---LSEKRKARLAEAGGGLGRQCRICKVRIMDVQRHYCNGCAYKKAICAMCGRKVGDTKLYKMSSK 110
[Close]
BLAST of NO29G01210 vs. NCBI_GenBank
Match: XP_014665232.1 (PREDICTED: cysteine-rich PDZ-binding protein-like [Priapulus caudatus])

HSP 1 Score: 83.6 bits (205), Expect = 4.300e-13
Identity = 48/109 (44.04%), Postives = 54/109 (49.54%), Query Frame = 0 
Query:    1 MVCDTCEKKLSKLCVPDKWKEGSRNVTGASAARSGGGPPGSINKXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVMDVQRHYCNGCAYKKAICAMCGKKVGNTKLYKMSS 110
            MVCD C+KKL K+  PD WK G+RN T       GGG   SI +                            RV  V  +YC GCAYKKAICAMCGKK+  TK YK SS
Sbjct:    1 MVCDKCQKKLGKVITPDPWKSGARNTT------EGGG--RSIGENKALTSGKARYKPYKGSDQFEKCRICKSRVHQVGSYYCQGCAYKKAICAMCGKKMMETKNYKQSS 101
[Close]
BLAST of NO29G01210 vs. NCBI_GenBank
Match: NP_001290659.1 (cysteine-rich PDZ-binding protein [Esox lucius] >ACO14307.1 Cysteine-rich PDZ-binding protein [Esox lucius])

HSP 1 Score: 81.3 bits (199), Expect = 2.100e-12
Identity = 45/109 (41.28%), Postives = 52/109 (47.71%), Query Frame = 0 
Query:    1 MVCDTCEKKLSKLCVPDKWKEGSRNVTGASAARSGGGPPGSINKXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVMDVQRHYCNGCAYKKAICAMCGKKVGNTKLYKMSS 110
            MVCD CEKKL ++  PD WK+G+RN T        GG   + NK                             V     HYC GCAYKK ICAMCGKKV +TK YK +S
Sbjct:    1 MVCDNCEKKLGRVITPDTWKDGARNTT------ESGGRKLNENKALTSKKARFDPYGKPGKTGFGICRICKSSVHQSGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTS 103
[Close]
BLAST of NO29G01210 vs. NCBI_GenBank
Match: XP_014013702.1 (PREDICTED: cysteine-rich PDZ-binding protein [Salmo salar] >XP_021420473.1 cysteine-rich PDZ-binding protein [Oncorhynchus mykiss] >XP_024002697.1 cysteine-rich PDZ-binding protein [Salvelinus alpinus] >XP_024242207.1 cysteine-rich PDZ-binding protein [Oncorhynchus tshawytscha] >CDQ84767.1 unnamed protein product [Oncorhynchus mykiss])

HSP 1 Score: 81.3 bits (199), Expect = 2.100e-12
Identity = 45/109 (41.28%), Postives = 52/109 (47.71%), Query Frame = 0 
Query:    1 MVCDTCEKKLSKLCVPDKWKEGSRNVTGASAARSGGGPPGSINKXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVMDVQRHYCNGCAYKKAICAMCGKKVGNTKLYKMSS 110
            MVCD CEKKL ++  PD WK+G+RN T        GG   + NK                             V     HYC GCAYKK ICAMCGKKV +TK YK +S
Sbjct:    1 MVCDNCEKKLGRVITPDTWKDGARNTT------ESGGRKLNENKALTSKKARFDPYGKPGKSGFGICRICKSSVHQSGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTS 103
[Close]
BLAST of NO29G01210 vs. NCBI_GenBank
Match: XP_012537317.1 (PREDICTED: cysteine-rich PDZ-binding protein [Monomorium pharaonis] >XP_012537318.1 PREDICTED: cysteine-rich PDZ-binding protein [Monomorium pharaonis])

HSP 1 Score: 81.3 bits (199), Expect = 2.100e-12
Identity = 47/109 (43.12%), Postives = 53/109 (48.62%), Query Frame = 0 
Query:    1 MVCDTCEKKLSKLCVPDKWKEGSRNVTGASAARSGGGPPGSINKXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVMDVQRHYCNGCAYKKAICAMCGKKVGNTKLYKMSS 110
            MVC+ CEKKL K+  PD WK G+RN T       GGG     NK                            +V  V  HYC  CAYKKAICAMCGKK+ NTK YK S+
Sbjct:    1 MVCEKCEKKLGKVITPDPWKTGARNTT------EGGGRKVGENK----ALSAGKARFNPYTTKFEICRICRQKVHQVGSHYCQSCAYKKAICAMCGKKLMNTKNYKQSA 99
[Close]
BLAST of NO29G01210 vs. NCBI_GenBank
Match: XP_018304361.1 (PREDICTED: cysteine-rich PDZ-binding protein [Trachymyrmex zeteki] >XP_018304362.1 PREDICTED: cysteine-rich PDZ-binding protein [Trachymyrmex zeteki] >KYQ54924.1 Cysteine-rich PDZ-binding protein [Trachymyrmex zeteki])

HSP 1 Score: 81.3 bits (199), Expect = 2.100e-12
Identity = 45/109 (41.28%), Postives = 53/109 (48.62%), Query Frame = 0 
Query:    1 MVCDTCEKKLSKLCVPDKWKEGSRNVTGASAARSGGGPPGSINKXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVMDVQRHYCNGCAYKKAICAMCGKKVGNTKLYKMSS 110
            MVC+ CEKKL K+  PD WK G+RN T +   + G     S  K                            +V  V  HYC  CAYKKAICAMCGKK+ NTK YK S+
Sbjct:    1 MVCEKCEKKLGKVITPDPWKTGARNTTESGGRKVGENKALSAGK----------ARFNPYTTKFEICRICRQKVHQVGSHYCQSCAYKKAICAMCGKKLMNTKNYKQSA 99
[Close]
BLAST of NO29G01210 vs. NCBI_GenBank
Match: XP_020309436.1 (cysteine-rich PDZ-binding protein [Oncorhynchus kisutch])

HSP 1 Score: 81.3 bits (199), Expect = 2.100e-12
Identity = 45/109 (41.28%), Postives = 52/109 (47.71%), Query Frame = 0 
Query:    1 MVCDTCEKKLSKLCVPDKWKEGSRNVTGASAARSGGGPPGSINKXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVMDVQRHYCNGCAYKKAICAMCGKKVGNTKLYKMSS 110
            MVCD CEKKL ++  PD WK+G+RN T        GG   + NK                             V     HYC GCAYKK ICAMCGKKV +TK YK +S
Sbjct:    1 MVCDNCEKKLGRVITPDTWKDGARNTT------ESGGRKLNENKALTSKRARFDPYGKPGKSGFGICRICKSSVHQSGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTS 103
[Close]
BLAST of NO29G01210 vs. NCBI_GenBank
Match: EPB85145.1 (cysteine-rich PDZ-binding protein [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 80.5 bits (197), Expect = 3.600e-12
Identity = 44/110 (40.00%), Postives = 51/110 (46.36%), Query Frame = 0 
Query:    1 MVCDTCEKKLSKLCVPDKWKEGSRNVTGASAARSGGGPPGSINKXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVMDVQRHYCNGCAYKKAICAMCGKKVGNTKLYKMSSK 111
            MVC  CEKKL+ L  PDKWKEGS+N    S+ R          K                            +V   + HYC  CAYKK ICAMCGK+V +T  YK SSK
Sbjct:    1 MVCKKCEKKLTTLAAPDKWKEGSKNAVAGSSGR----------KLNQNKLLSRSAKIRFDPLNVRKCKLCKTKVHQDKAHYCQDCAYKKGICAMCGKQVLDTSAYKQSSK 100
[Close]
BLAST of NO29G01210 vs. NCBI_GenBank
Match: XP_011300105.1 (PREDICTED: cysteine-rich PDZ-binding protein [Fopius arisanus])

HSP 1 Score: 80.1 bits (196), Expect = 4.800e-12
Identity = 44/109 (40.37%), Postives = 53/109 (48.62%), Query Frame = 0 
Query:    1 MVCDTCEKKLSKLCVPDKWKEGSRNVTGASAARSGGGPPGSINKXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVMDVQRHYCNGCAYKKAICAMCGKKVGNTKLYKMSS 110
            MVC+ CEKKL K+  PD WK G+RN   +   + G     S +K                            +V  V  HYC  CAYKKAICAMCGKK+ NTK YK S+
Sbjct:    1 MVCEKCEKKLGKVITPDPWKSGARNTVESGGRKVGENKALSASK----------NRFNPYTAKFEICKICRQKVHQVGSHYCQSCAYKKAICAMCGKKLMNTKNYKQSA 99
[Close]
BLAST of NO29G01210 vs. NCBI_GenBank
Match: XP_012264803.1 (cysteine-rich PDZ-binding protein [Athalia rosae])

HSP 1 Score: 79.7 bits (195), Expect = 6.200e-12
Identity = 44/109 (40.37%), Postives = 53/109 (48.62%), Query Frame = 0 
Query:    1 MVCDTCEKKLSKLCVPDKWKEGSRNVTGASAARSGGGPPGSINKXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVMDVQRHYCNGCAYKKAICAMCGKKVGNTKLYKMSS 110
            MVCD CEKKL ++  PD WK G+RN   +   + G     S NK                            +V  V  HYC  CAYKKAICAMCGKK+ +TK YK S+
Sbjct:    1 MVCDKCEKKLGRVITPDPWKSGARNTVESGGRKVGENKALSNNK----------ARFNPYTAKFETCKICRQKVHQVGSHYCQSCAYKKAICAMCGKKLMSTKNYKQSA 99
The following BLAST results are available for this feature:
BLAST of NO29G01210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21354.12.600e-2658.41cysteine-rich pdz-binding protein [Nannochloropsis... [more]
XP_014665232.14.300e-1344.04PREDICTED: cysteine-rich PDZ-binding protein-like ... [more]
NP_001290659.12.100e-1241.28cysteine-rich PDZ-binding protein [Esox lucius] >A... [more]
XP_014013702.12.100e-1241.28PREDICTED: cysteine-rich PDZ-binding protein [Salm... [more]
XP_012537317.12.100e-1243.12PREDICTED: cysteine-rich PDZ-binding protein [Mono... [more]
XP_018304361.12.100e-1241.28PREDICTED: cysteine-rich PDZ-binding protein [Trac... [more]
XP_020309436.12.100e-1241.28cysteine-rich PDZ-binding protein [Oncorhynchus ki... [more]
EPB85145.13.600e-1240.00cysteine-rich PDZ-binding protein [Mucor circinell... [more]
XP_011300105.14.800e-1240.37PREDICTED: cysteine-rich PDZ-binding protein [Fopi... [more]
XP_012264803.16.200e-1240.37cysteine-rich PDZ-binding protein [Athalia rosae][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01210.1NO29G01210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601471gene_8296Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100075g2gene9088Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01210.1NO29G01210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01210 ID=NO29G01210|Name=NO29G01210|organism=Nannochloropsis oceanica|type=gene|length=452bp
ATGGTGTGCGATACGTGCGAAAAGAAACTCAGCAAGCTCTGCGTGCCCGA
CAAATGGAAAGAAGGCAGCCGGAATGTGACGGGGGCTAGTGCTGCCAGAA
GTGGTGGTGGTCCGCCCGGTTCGATCAACAAGCTTTCTGAGAAGCGCAAG
GCCCGGCTGGCAGAAGCAGGAGGAGGTGGAGGGGTGGGAGGAAGGCAGTG
TCGTATCTGTAAAGTGAGGGTGATGGATGTACAGCGGCATTACTGCAATG
GATGTGCGTACAAGgtgaggttaaggaaaggagagagggaggaaggggag
tagtttaccactattgcccccccaaatgctcgcattataacacctggatg
cgaatacccaccttctcccttcccgacgaacagAAAGCAATTTGTGCCAT
GTGCGGGAAGAAGGTGGGAAACACGAAGCTGTACAAGATGAGCAGCAAGT
GA
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protein sequence of NO29G01210.1

>NO29G01210.1-protein ID=NO29G01210.1-protein|Name=NO29G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MVCDTCEKKLSKLCVPDKWKEGSRNVTGASAARSGGGPPGSINKLSEKRK
ARLAEAGGGGGVGGRQCRICKVRVMDVQRHYCNGCAYKKAICAMCGKKVG
NTKLYKMSSK*
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Synonyms
Publications