NO29G01140, NO29G01140 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO29G01140
Unique Name	NO29G01140
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3406
Alignment location	chr29:374476..377881 -

Link to JBrowse

Properties


Property Name	Value
Description	Anaphase-promoting complex subunit 2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr29	genome	chr29:374476..377881 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0031625	ubiquitin protein ligase binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006511	ubiquitin-dependent protein catabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR036390	WH_DNA-bd_sf
IPR036317	Cullin_homology_sf
IPR016158	Cullin_homology
IPR001373	Cullin_N
IPR014786	APC_su2_C

Homology

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BLAST of NO29G01140 vs. NCBI_GenBank
Match: EWM21328.1 (anaphase-promoting complex subunit 2, partial [Nannochloropsis gaditana])

HSP 1 Score: 317.4 bits (812), Expect = 1.700e-82
Identity = 221/460 (48.04%), Postives = 274/460 (59.57%), Query Frame = 0

Query:    1 MAPTAVSFTGASSAAPAAETSI-TEAVKDAWEELYQALDQYVLLPSSSSPQRHQYEQACPLQKAWLQSVLPAQALRVVLDSGLGSLVLEYVAEGLDQELVKVVRPAFWRHFQQEKPQHAKNVDDEEHDEQRQCQTGFPEWVYTRMRAALTCASQALQERDRKLALLGEFLRLPHQTRQECAMLHTRFAAIVFNTAPKKEGVVFWERWWVIFFRTSLXXXXXXXXXXXXXXXXXXXXXXXXXD---MMSVEDVXXXXXXXXXXXXXXXXXXXXXXXXVEVAWRALRRLGWLPLVQSAVTQVMKGETERYIERTCKGVYDVPRLGQVGAWKDAVLMPWLERLM----EGGEXXXXXXSNMVVTPSFNSKSKTASSSSFQEWRLRHAFSVYESFAGVRMLEMFDIIRDFPDSLPAVLELREALEVTQQHGQLAGLLRESMRSRLLHNGANTMQIIDVYIATIK 453
            MAP A      SS +P  +     EAVKDAW E+Y+ALD+++L PS         +      KAW++SV+P  ALR++  +GLGSL +EYVA+ +D EL +VV+PAFW HF        +  +  E  E R+     P WV   M AAL+ A QAL+ER  KLA++ E L +P +  +   ML TR AA +FNTAP +    F++ WW  FF TSL         XXXXXXXXXXXXXXXX    MMS E+                         VE A +ALRRL WLPLVQS +T V+K ETE YIERTC GVYD P L +V AW+DAVLMPWL  L+    E G             P+  +      +SSF EWRLRH+F + E F  VRMLEMFDI+RD+PD++ A  +LR ALEVTQQH QLA  L ESMR RLLH GANTMQ++DVYIATI+
Sbjct:    1 MAPAAF----LSSCSPMHDDEAGMEAVKDAWVEVYEALDRHLLFPSKGQCHNDNVQLEGSSAKAWMESVVPRHALRLLQKAGLGSLAVEYVADCMDHELARVVKPAFWEHFDDVGAGREEAENITEMQEHRRVS---PHWVIGYMGAALSYADQALRERRAKLAMVAE-LVVPAEAGRLEDMLRTRLAAFIFNTAPDE----FYD-WWAAFFETSLRAWHWQWRRXXXXXXXXXXXXXXXXXXXIMMSAEEA---DDAGYEEDEGAWEDWGVHAEEVETALKALRRLHWLPLVQSTITSVVKRETENYIERTCAGVYDEPCLRRVEAWRDAVLMPWLAGLLGEEEEVGGEQTGRGPWTPSAPALGTPHAPPLTSSFHEWRLRHSFVMQECFVRVRMLEMFDIVRDYPDTVAAARDLRAALEVTQQHRQLAACLCESMRQRLLHVGANTMQVLDVYIATIQ 444

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BLAST of NO29G01140 vs. NCBI_GenBank
Match: GBG30278.1 (Anaphase-promoting complex subunit 2 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 303.1 bits (775), Expect = 3.400e-78
Identity = 230/788 (29.19%), Postives = 334/788 (42.39%), Query Frame = 0

Query:  283 LGWLPLVQSAVTQVMKGETERYIERTCKGVYDVPRLGQVGAWKDAVLMPWLERLMEGGEXXXXXXSNMVVTPSFNSKSKTASSSSFQEWRLRHAFSVYESFAGVRMLEMFDIIRDFPDSLPAVLELREALEVTQQHGQLAGLLRESMRSRLLHNGANTMQIIDVYIATIKALRELDPSDSILEAVAHPIRAYLQGRKDTVRCIVSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWMLISIYGSKDLFVSEYRLMLAEKLLNLNLNAKSWSDYDTDKEVIKLELLKKRFGEGGALQPCEIMIRDVEDSKRVNALVAARLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAATCVDATIVSHHFWPPLQEEELVLHPTMAGRMTDFASAYSVLKNPRKLEWKPQLGLVTLDLEFDCLEVEREEEGGREGGIQEWDEEAEKVVKAWRKEERRKKRVVARSFTVSPVHATLIMHFGKEEDDTGSGLEEERSQTELGQLTSLPLEVVARKMTFWVNQGIVSLSSTPSPIPSFASPSAAAAVEMAGGGLTSPPNFYLQQQQTQLQHQPHRPGEVYYKLITKQDPDGPDGQXXXXXXXXSFEDDDLEAAVSSDAQEAKETDVYISYVLGMLGTYGGRSARAIHDTLKIWAGGDQQTYSLHLGEVERILQRLVGEEKLEMVDGVYQL 1071
            L W  L++  ++ ++   TE+ I R CKG ++   LG+V AW D+V + WL+ L++         ++ VV               F ++R R  F V+E+   +RM E+FDII +FP+S PA+ +L++ L  T QH  L   LR++  SRLLH GANT QI+DVYIATIKALR +D S  +LEA++ PI++YL+ R+DTVRCIV+SL                                                                        L ML+ IYGSK+LFV+EYRLMLA+KLL       S  ++D ++EV  LELLK RFGE  ++  CEIM++D+E+SKR+N  +   L                                                                                                 ++ TI+S  FWP L  +E+ LHP +  RM   A  YSVLKNPR+L WK  LG+V L+LEFD                   D++                    ++FTVSP+ A LIM+FG          ++  +  +L +   +  +VV ++M++WVN G+V     P                                           P EV Y  + +   D    +        + EDDD + AVS+DAQ A+E  VY S+V GML  Y   +   IH+ LK++    +  Y  ++ E+E  L +LV +E LE+ +G Y L
Sbjct:  220 LEWFLLIEEPLSDILCKSTEKNISRVCKGKFEYNLLGRVRAWLDSVALAWLQELLQ------VCLADPVV-----------CKEKFAQYRARLEFHVFETLCDLRMAEVFDIITEFPESSPALEDLKDCLARTHQHRDLVLSLRQAFASRLLHPGANTAQILDVYIATIKALRLVDTSGVLLEAISEPIKSYLRKREDTVRCIVTSL-----TDDSNSELFEELGRETEIRPIAHDYDESDNEDPDEENARGADPEAWTPDPIEADPRKTSRSRRSNDILSMLVHIYGSKELFVNEYRLMLADKLL-------SSLEFDAEREVRNLELLKLRFGE-SSMTSCEIMVKDIEESKRINTNIGTTLAGKTLLREAARSYPNID-----------------------------------------------------------------------------LQTMETTIISKQFWPTLHGDEINLHPLVKQRMEAIAHEYSVLKNPRQLNWKTNLGMVELELEFD-------------------DDQ-------------------CKTFTVSPILANLIMYFGD---------KKTWNLPDLAREMDVDSDVVRKRMSYWVNAGVVRAERVP------------------------------------------LPEEVTYTAVDRLSEDHNGDE-------VNAEDDDADRAVSADAQLAEEMKVYESFVRGMLNNYDALTLERIHNMLKMFVSTGEHKYEKNINELEAFLDKLVKDEVLEVTNGSYFL 804

[Close]

BLAST of NO29G01140 vs. NCBI_GenBank
Match: ETI40806.1 (hypothetical protein F443_13885 [Phytophthora parasitica P1569] >ETI40807.1 hypothetical protein, variant [Phytophthora parasitica P1569])

HSP 1 Score: 285.0 bits (728), Expect = 9.500e-73
Identity = 257/794 (32.37%), Postives = 367/794 (46.22%), Query Frame = 0

Query:  278 RALRRLGWLPLVQSAVTQVMKGETERYIERTCKGVYDVPRLGQVGAWKDAVLMPWLERLMEGGEXXXXXXSNMVVTPSFNSKSKTASSSSFQEWRLRHAFSVYESFAGVRMLEMFDIIRDFPDSLPAVLELREALEVTQQHGQLAGLLRESMRSRLLHNGANTMQIIDVYIATIKALRELDPSDSILEAVAHPIRAYLQGRKDTVRCIVSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWMLISIYGSKDLFVSEYRLMLAEKLLNLNLNAKSWSDYDTDKEVIKLELLKKRFGEGGALQPCEIMIRDVEDSKRVNALVAARLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAATCVDATIVSHHFWPPLQEEELVLHPTMAGRMTDFASAYSVLKNPRKLEWKPQLGLVTLDLEFDCLEVEREEEGGREGGIQEWDEEAEKVVKAWRKEERRKKRVVARSFTVSPVHATLIMHFGKEEDDTGSGLEEERSQTELGQLTSLPLEVVARKMTFWVNQGIVSLSSTPSPIPSFASPSAAAAVEMAGGGLTSPPNFYLQQQQTQLQHQPHRPGEVYYKLITKQDPDGPDGQXXXXXXXXSFEDDDLEAAVSSDAQEAKETDVYISYVLGMLGTYGGRSARAIHDTLKIWAGGDQQTYSLHLGEVERILQRLVGEEKLEMVDGVYQLA 1072
            + L +L WL + + A+ +V+  + ++ ++ TC  VYD   L +V  W  + L+PWLE +M+                       T   +S ++WR   +  V + F  +R+ ++F+II++FPDS+PA+ +LR+ LE TQQHG+L    R ++++RLL  GANT  I+D+Y++TIKA R LDP   +LEA++ P++ YL+ RKDTVRCIV SL                                        XXXXXXXXXXXXXXXXXXXXXXXXXXXX    L +L++IYGS++LFV+EYR+MLA+KLL+ NL      ++DTD++V  LELLK RFGE  +LQ CEIM+RD+EDSKR+N  V + +                                                                                               T VDATIVS  FWPPLQ E+  LHP ++  +  F  AY+VL+NPR LEW   LG V L      +E+E EE                                  R F VSP+ AT+I++F  EE D  S +EE  ++ E+        +++ + ++ WVN G+VS  S              A+V                                     T+ D D                 +D+E AVSSDAQ  ++  V  +Y++GML  YG  + + IH+ L  +A    Q Y+  +  +  +L +LV + KLE+V G YQLA
Sbjct:  195 QTLLQLEWLHVAEPALLRVLHSQIKKVVKSTCGEVYDELFLTEVEQWACSELLPWLEEIMQ-----------------------TKDEASTRKWRDILSRQVLQEFGSLRIKQLFEIIKEFPDSVPALEDLRQCLERTQQHGELLQEFRGALQARLLQPGANTSAILDIYVSTIKAFRLLDPKGVLLEALSDPVKEYLRKRKDTVRCIVQSL--------------TDEQNGDLFEELRRDNMRIIQHDDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDILRILVNIYGSRELFVNEYRMMLADKLLH-NL------EFDTDRDVQTLELLKLRFGE-DSLQQCEIMVRDIEDSKRLNVNVHSTMNKPESKAAVATETSSGVETDSQPALPGIPF-----------------------------------------------------------------TRVDATIVSQQFWPPLQGEDFTLHPKVSKDVDAFKDAYNVLRNPRSLEWNSSLGSVQLS-----IELEGEE----------------------------------REFNVSPLQATMILYF--EEKDRWS-VEELAAKLEISD------DLLLKHVSLWVNHGLVSFGS--------GRKELVASVSFQD---------------------------------TRCDDDS--------------MVEDVETAVSSDAQAEEDFKVLENYIVGMLSNYGSLTIQRIHNLLSTFARSGAQPYTKTISGLSVVLGKLVSKGKLELVGGQYQLA 775

[Close]

BLAST of NO29G01140 vs. NCBI_GenBank
Match: ETL34332.1 (hypothetical protein L916_13423 [Phytophthora parasitica] >ETL34333.1 hypothetical protein, variant [Phytophthora parasitica] >ETM40838.1 hypothetical protein L914_13322 [Phytophthora parasitica] >ETM40839.1 hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 285.0 bits (728), Expect = 9.500e-73
Identity = 257/794 (32.37%), Postives = 367/794 (46.22%), Query Frame = 0

Query:  278 RALRRLGWLPLVQSAVTQVMKGETERYIERTCKGVYDVPRLGQVGAWKDAVLMPWLERLMEGGEXXXXXXSNMVVTPSFNSKSKTASSSSFQEWRLRHAFSVYESFAGVRMLEMFDIIRDFPDSLPAVLELREALEVTQQHGQLAGLLRESMRSRLLHNGANTMQIIDVYIATIKALRELDPSDSILEAVAHPIRAYLQGRKDTVRCIVSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWMLISIYGSKDLFVSEYRLMLAEKLLNLNLNAKSWSDYDTDKEVIKLELLKKRFGEGGALQPCEIMIRDVEDSKRVNALVAARLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAATCVDATIVSHHFWPPLQEEELVLHPTMAGRMTDFASAYSVLKNPRKLEWKPQLGLVTLDLEFDCLEVEREEEGGREGGIQEWDEEAEKVVKAWRKEERRKKRVVARSFTVSPVHATLIMHFGKEEDDTGSGLEEERSQTELGQLTSLPLEVVARKMTFWVNQGIVSLSSTPSPIPSFASPSAAAAVEMAGGGLTSPPNFYLQQQQTQLQHQPHRPGEVYYKLITKQDPDGPDGQXXXXXXXXSFEDDDLEAAVSSDAQEAKETDVYISYVLGMLGTYGGRSARAIHDTLKIWAGGDQQTYSLHLGEVERILQRLVGEEKLEMVDGVYQLA 1072
            + L +L WL + + A+ +V+  + ++ ++ TC  VYD   L +V  W  + L+PWLE +M+                       T   +S ++WR   +  V + F  +R+ ++F+II++FPDS+PA+ +LR+ LE TQQHG+L    R ++++RLL  GANT  I+D+Y++TIKA R LDP   +LEA++ P++ YL+ RKDTVRCIV SL                                        XXXXXXXXXXXXXXXXXXXXXXXXXXXX    L +L++IYGS++LFV+EYR+MLA+KLL+ NL      ++DTD++V  LELLK RFGE  +LQ CEIM+RD+EDSKR+N  V + +                                                                                               T VDATIVS  FWPPLQ E+  LHP ++  +  F  AY+VL+NPR LEW   LG V L      +E+E EE                                  R F VSP+ AT+I++F  EE D  S +EE  ++ E+        +++ + ++ WVN G+VS  S              A+V                                     T+ D D                 +D+E AVSSDAQ  ++  V  +Y++GML  YG  + + IH+ L  +A    Q Y+  +  +  +L +LV + KLE+V G YQLA
Sbjct:  195 QTLLQLEWLHVAEPALLRVLHSQIKKVVKSTCGEVYDELFLTEVEQWACSELLPWLEEIMQ-----------------------TKDEASTRKWRDILSRQVLQEFGSLRIKQLFEIIKEFPDSVPALEDLRQCLERTQQHGELLQEFRGALQARLLQPGANTSAILDIYVSTIKAFRLLDPKGVLLEALSDPVKEYLRKRKDTVRCIVQSL--------------TDEQNGDLFEELRRDNMRIIQHDDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDILRILVNIYGSRELFVNEYRMMLADKLLH-NL------EFDTDRDVQTLELLKLRFGE-DSLQQCEIMVRDIEDSKRLNVNVHSTMNKPESKAAVATETSSGVETESQPALPGIPF-----------------------------------------------------------------TRVDATIVSQQFWPPLQGEDFTLHPKVSKDVDAFKDAYNVLRNPRSLEWNSSLGSVQLS-----IELEGEE----------------------------------REFNVSPLQATMILYF--EEKDRWS-VEELAAKLEISD------DLLLKHVSLWVNHGLVSFGS--------GRKELVASVSFQD---------------------------------TRCDDDS--------------MVEDVETAVSSDAQAEEDFKVLENYIVGMLSNYGSLTIQRIHNLLSTFARSGAQPYTKTISGLSVVLGKLVSKGKLELVGGQYQLA 775

[Close]

BLAST of NO29G01140 vs. NCBI_GenBank
Match: ETL87611.1 (hypothetical protein L917_13231 [Phytophthora parasitica] >ETL87612.1 hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 285.0 bits (728), Expect = 9.500e-73
Identity = 257/794 (32.37%), Postives = 367/794 (46.22%), Query Frame = 0

Query:  278 RALRRLGWLPLVQSAVTQVMKGETERYIERTCKGVYDVPRLGQVGAWKDAVLMPWLERLMEGGEXXXXXXSNMVVTPSFNSKSKTASSSSFQEWRLRHAFSVYESFAGVRMLEMFDIIRDFPDSLPAVLELREALEVTQQHGQLAGLLRESMRSRLLHNGANTMQIIDVYIATIKALRELDPSDSILEAVAHPIRAYLQGRKDTVRCIVSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWMLISIYGSKDLFVSEYRLMLAEKLLNLNLNAKSWSDYDTDKEVIKLELLKKRFGEGGALQPCEIMIRDVEDSKRVNALVAARLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAATCVDATIVSHHFWPPLQEEELVLHPTMAGRMTDFASAYSVLKNPRKLEWKPQLGLVTLDLEFDCLEVEREEEGGREGGIQEWDEEAEKVVKAWRKEERRKKRVVARSFTVSPVHATLIMHFGKEEDDTGSGLEEERSQTELGQLTSLPLEVVARKMTFWVNQGIVSLSSTPSPIPSFASPSAAAAVEMAGGGLTSPPNFYLQQQQTQLQHQPHRPGEVYYKLITKQDPDGPDGQXXXXXXXXSFEDDDLEAAVSSDAQEAKETDVYISYVLGMLGTYGGRSARAIHDTLKIWAGGDQQTYSLHLGEVERILQRLVGEEKLEMVDGVYQLA 1072
            + L +L WL + + A+ +V+  + ++ ++ TC  VYD   L +V  W  + L+PWLE +M+                       T   +S ++WR   +  V + F  +R+ ++F+II++FPDS+PA+ +LR+ LE TQQHG+L    R ++++RLL  GANT  I+D+Y++TIKA R LDP   +LEA++ P++ YL+ RKDTVRCIV SL                                        XXXXXXXXXXXXXXXXXXXXXXXXXXXX    L +L++IYGS++LFV+EYR+MLA+KLL+ NL      ++DTD++V  LELLK RFGE  +LQ CEIM+RD+EDSKR+N  V + +                                                                                               T VDATIVS  FWPPLQ E+  LHP ++  +  F  AY+VL+NPR LEW   LG V L      +E+E EE                                  R F VSP+ AT+I++F  EE D  S +EE  ++ E+        +++ + ++ WVN G+VS  S              A+V                                     T+ D D                 +D+E AVSSDAQ  ++  V  +Y++GML  YG  + + IH+ L  +A    Q Y+  +  +  +L +LV + KLE+V G YQLA
Sbjct:  195 QTLLQLEWLHVAEPALLRVLHSQIKKVVKSTCGEVYDELFLTEVEQWACSELLPWLEEIMQ-----------------------TKDEASTRKWRDILSRQVLQEFGSLRIKQLFEIIKEFPDSVPALEDLRQCLERTQQHGELLQEFRGALQARLLQPGANTSAILDIYVSTIKAFRLLDPKGVLLEALSDPVKEYLRKRKDTVRCIVQSL--------------TDEQNGDLFEELRRDNMRIIQHDDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDILRILVNIYGSRELFVNEYRMMLADKLLH-NL------EFDTDRDVQTLELLKLRFGE-DSLQQCEIMVRDIEDSKRLNVNVHSTMNKPESKAAVATETSSGVETESQPALPGIPF-----------------------------------------------------------------TRVDATIVSQQFWPPLQGEDFTLHPKVSKDVDAFKDAYNVLRNPRSLEWNSSLGSVQLS-----IELEGEE----------------------------------REFNVSPLQATMILYF--EEKDRWS-VEELAAKLEISD------DLLLKHVSLWVNHGLVSFGS--------GRKELVASVSFQD---------------------------------TRCDDDS--------------MVEDVETAVSSDAQAEEDFKVLENYIVGMLSNYGSLTIQRIHNLLSTFARSGAQPYTKTISGLSVVLGKLVSKGKLELVGGQYQLA 775

[Close]

BLAST of NO29G01140 vs. NCBI_GenBank
Match: XP_008909305.1 (hypothetical protein PPTG_14091 [Phytophthora parasitica INRA-310] >XP_008909306.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETN05330.1 hypothetical protein PPTG_14091 [Phytophthora parasitica INRA-310] >ETN05331.1 hypothetical protein, variant [Phytophthora parasitica INRA-310])

HSP 1 Score: 285.0 bits (728), Expect = 9.500e-73
Identity = 257/794 (32.37%), Postives = 367/794 (46.22%), Query Frame = 0

Query:  278 RALRRLGWLPLVQSAVTQVMKGETERYIERTCKGVYDVPRLGQVGAWKDAVLMPWLERLMEGGEXXXXXXSNMVVTPSFNSKSKTASSSSFQEWRLRHAFSVYESFAGVRMLEMFDIIRDFPDSLPAVLELREALEVTQQHGQLAGLLRESMRSRLLHNGANTMQIIDVYIATIKALRELDPSDSILEAVAHPIRAYLQGRKDTVRCIVSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWMLISIYGSKDLFVSEYRLMLAEKLLNLNLNAKSWSDYDTDKEVIKLELLKKRFGEGGALQPCEIMIRDVEDSKRVNALVAARLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAATCVDATIVSHHFWPPLQEEELVLHPTMAGRMTDFASAYSVLKNPRKLEWKPQLGLVTLDLEFDCLEVEREEEGGREGGIQEWDEEAEKVVKAWRKEERRKKRVVARSFTVSPVHATLIMHFGKEEDDTGSGLEEERSQTELGQLTSLPLEVVARKMTFWVNQGIVSLSSTPSPIPSFASPSAAAAVEMAGGGLTSPPNFYLQQQQTQLQHQPHRPGEVYYKLITKQDPDGPDGQXXXXXXXXSFEDDDLEAAVSSDAQEAKETDVYISYVLGMLGTYGGRSARAIHDTLKIWAGGDQQTYSLHLGEVERILQRLVGEEKLEMVDGVYQLA 1072
            + L +L WL + + A+ +V+  + ++ ++ TC  VYD   L +V  W  + L+PWLE +M+                       T   +S ++WR   +  V + F  +R+ ++F+II++FPDS+PA+ +LR+ LE TQQHG+L    R ++++RLL  GANT  I+D+Y++TIKA R LDP   +LEA++ P++ YL+ RKDTVRCIV SL                                        XXXXXXXXXXXXXXXXXXXXXXXXXXXX    L +L++IYGS++LFV+EYR+MLA+KLL+ NL      ++DTD++V  LELLK RFGE  +LQ CEIM+RD+EDSKR+N  V + +                                                                                               T VDATIVS  FWPPLQ E+  LHP ++  +  F  AY+VL+NPR LEW   LG V L      +E+E EE                                  R F VSP+ AT+I++F  EE D  S +EE  ++ E+        +++ + ++ WVN G+VS  S              A+V                                     T+ D D                 +D+E AVSSDAQ  ++  V  +Y++GML  YG  + + IH+ L  +A    Q Y+  +  +  +L +LV + KLE+V G YQLA
Sbjct:  195 QTLLQLEWLHVAEPALLRVLHSQIKKVVKSTCGEVYDELFLTEVEQWACSELLPWLEEIMQ-----------------------TKDEASTRKWRDILSRQVLQEFGSLRIKQLFEIIKEFPDSVPALEDLRQCLERTQQHGELLQEFRGALQARLLQPGANTSAILDIYVSTIKAFRLLDPKGVLLEALSDPVKEYLRKRKDTVRCIVQSL--------------TDEQNGDLFEELRRDNMRIIQHDDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDILRILVNIYGSRELFVNEYRMMLADKLLH-NL------EFDTDRDVQTLELLKLRFGE-DSLQQCEIMVRDIEDSKRLNVNVHSTMNKPESKAAVATETSSGVETESQPALPGIPF-----------------------------------------------------------------TRVDATIVSQQFWPPLQGEDFTLHPKVSKDVDAFKDAYNVLRNPRSLEWNSSLGSVQLS-----IELEGEE----------------------------------REFNVSPLQATMILYF--EEKDRWS-VEELAAKLEISD------DLLLKHVSLWVNHGLVSFGS--------GRKELVASVSFQD---------------------------------TRCDDDS--------------MVEDVETAVSSDAQAEEDFKVLENYIVGMLSNYGSLTIQRIHNLLSTFARSGAQPYTKTISGLSVVLGKLVSKGKLELVGGQYQLA 775

[Close]

BLAST of NO29G01140 vs. NCBI_GenBank
Match: ETK80916.1 (hypothetical protein L915_13525 [Phytophthora parasitica])

HSP 1 Score: 283.5 bits (724), Expect = 2.800e-72
Identity = 254/794 (31.99%), Postives = 365/794 (45.97%), Query Frame = 0

Query:  278 RALRRLGWLPLVQSAVTQVMKGETERYIERTCKGVYDVPRLGQVGAWKDAVLMPWLERLMEGGEXXXXXXSNMVVTPSFNSKSKTASSSSFQEWRLRHAFSVYESFAGVRMLEMFDIIRDFPDSLPAVLELREALEVTQQHGQLAGLLRESMRSRLLHNGANTMQIIDVYIATIKALRELDPSDSILEAVAHPIRAYLQGRKDTVRCIVSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWMLISIYGSKDLFVSEYRLMLAEKLLNLNLNAKSWSDYDTDKEVIKLELLKKRFGEGGALQPCEIMIRDVEDSKRVNALVAARLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAATCVDATIVSHHFWPPLQEEELVLHPTMAGRMTDFASAYSVLKNPRKLEWKPQLGLVTLDLEFDCLEVEREEEGGREGGIQEWDEEAEKVVKAWRKEERRKKRVVARSFTVSPVHATLIMHFGKEEDDTGSGLEEERSQTELGQLTSLPLEVVARKMTFWVNQGIVSLSSTPSPIPSFASPSAAAAVEMAGGGLTSPPNFYLQQQQTQLQHQPHRPGEVYYKLITKQDPDGPDGQXXXXXXXXSFEDDDLEAAVSSDAQEAKETDVYISYVLGMLGTYGGRSARAIHDTLKIWAGGDQQTYSLHLGEVERILQRLVGEEKLEMVDGVYQLA 1072
            + L +L WL + + A+ +V+  + ++ ++ TC  VYD   L +V  W  + L+PWLE +M+                       T   +S ++WR   +  V + F  +R+ ++F+II++FPDS+PA+ +LR+ LE TQQHG+L    R ++++RLL  GANT  I+D+Y++TIKA R LDP   +LEA++ P++ YL+ RKDTVRCIV SL                                        XXXXXXXXXXXXXXXXXXXXXXXXXXXX    L +L++IYGS++LFV+EYR+MLA+KLL+ NL      ++DTD++V  LELLK RFGE  +LQ CEIM+RD+EDSKR+N  V + +                                                                                               T VDATIVS  FWPPLQ E+  LHP ++  +  F  AY+VL+NPR LEW   LG V L      +E+E EE                                  R F VSP+ AT+I++F   E+     +EE  ++ E+        +++ + ++ WVN G+VS  S              A+V                                     T+ D D                 +D+E AVSSDAQ  ++  V  +Y++GML  YG  + + IH+ L  +A    Q Y+  +  +  +L +LV + KLE+V G YQLA
Sbjct:  195 QTLLQLEWLHVAEPALLRVLHSQIKKVVKSTCGEVYDELFLTEVEQWACSELLPWLEEIMQ-----------------------TKDEASTRKWRDILSRQVLQEFGSLRIKQLFEIIKEFPDSVPALEDLRQCLERTQQHGELLQEFRGALQARLLQPGANTSAILDIYVSTIKAFRLLDPKGVLLEALSDPVKEYLRKRKDTVRCIVQSL--------------TDEQNGDLFEELRRDNMRIIQHDDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDILRILVNIYGSRELFVNEYRMMLADKLLH-NL------EFDTDRDVQTLELLKLRFGE-DSLQQCEIMVRDIEDSKRLNVNVHSTMNKPESKAAVATETSSGVETESQPALPGIPF-----------------------------------------------------------------TRVDATIVSQQFWPPLQGEDFTLHPKVSKDVDAFKDAYNVLRNPRSLEWNSSLGSVQLS-----IELEGEE----------------------------------REFNVSPLQATMILYF---EEKARWSVEELAAKLEISD------DLLLKHVSLWVNHGLVSFGS--------GRKELVASVSFQD---------------------------------TRCDDDS--------------MVEDVETAVSSDAQAEEDFKVLENYIVGMLSNYGSLTIQRIHNLLSTFARSGAQPYTKTISGLSVVLGKLVSKGKLELVGGQYQLA 775

[Close]

BLAST of NO29G01140 vs. NCBI_GenBank
Match: ETP10554.1 (hypothetical protein F441_13820 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 283.5 bits (724), Expect = 2.800e-72
Identity = 254/794 (31.99%), Postives = 365/794 (45.97%), Query Frame = 0

Query:  278 RALRRLGWLPLVQSAVTQVMKGETERYIERTCKGVYDVPRLGQVGAWKDAVLMPWLERLMEGGEXXXXXXSNMVVTPSFNSKSKTASSSSFQEWRLRHAFSVYESFAGVRMLEMFDIIRDFPDSLPAVLELREALEVTQQHGQLAGLLRESMRSRLLHNGANTMQIIDVYIATIKALRELDPSDSILEAVAHPIRAYLQGRKDTVRCIVSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWMLISIYGSKDLFVSEYRLMLAEKLLNLNLNAKSWSDYDTDKEVIKLELLKKRFGEGGALQPCEIMIRDVEDSKRVNALVAARLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAATCVDATIVSHHFWPPLQEEELVLHPTMAGRMTDFASAYSVLKNPRKLEWKPQLGLVTLDLEFDCLEVEREEEGGREGGIQEWDEEAEKVVKAWRKEERRKKRVVARSFTVSPVHATLIMHFGKEEDDTGSGLEEERSQTELGQLTSLPLEVVARKMTFWVNQGIVSLSSTPSPIPSFASPSAAAAVEMAGGGLTSPPNFYLQQQQTQLQHQPHRPGEVYYKLITKQDPDGPDGQXXXXXXXXSFEDDDLEAAVSSDAQEAKETDVYISYVLGMLGTYGGRSARAIHDTLKIWAGGDQQTYSLHLGEVERILQRLVGEEKLEMVDGVYQLA 1072
            + L +L WL + + A+ +V+  + ++ ++ TC  VYD   L +V  W  + L+PWLE +M+                       T   +S ++WR   +  V + F  +R+ ++F+II++FPDS+PA+ +LR+ LE TQQHG+L    R ++++RLL  GANT  I+D+Y++TIKA R LDP   +LEA++ P++ YL+ RKDTVRCIV SL                                        XXXXXXXXXXXXXXXXXXXXXXXXXXXX    L +L++IYGS++LFV+EYR+MLA+KLL+ NL      ++DTD++V  LELLK RFGE  +LQ CEIM+RD+EDSKR+N  V + +                                                                                               T VDATIVS  FWPPLQ E+  LHP ++  +  F  AY+VL+NPR LEW   LG V L      +E+E EE                                  R F VSP+ AT+I++F   E+     +EE  ++ E+        +++ + ++ WVN G+VS  S              A+V                                     T+ D D                 +D+E AVSSDAQ  ++  V  +Y++GML  YG  + + IH+ L  +A    Q Y+  +  +  +L +LV + KLE+V G YQLA
Sbjct:  195 QTLLQLEWLHVAEPALLRVLHSQIKKVVKSTCGEVYDELFLTEVEQWACSELLPWLEEIMQ-----------------------TKDEASTRKWRDILSRQVLQEFGSLRIKQLFEIIKEFPDSVPALEDLRQCLERTQQHGELLQEFRGALQARLLQPGANTSAILDIYVSTIKAFRLLDPKGVLLEALSDPVKEYLRKRKDTVRCIVQSL--------------TDEQNGDLFEELRRDNMRIIQHDDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDILRILVNIYGSRELFVNEYRMMLADKLLH-NL------EFDTDRDVQTLELLKLRFGE-DSLQQCEIMVRDIEDSKRLNVNVHSTMNKPESKAAVATETSSGVETDSQPALPGIPF-----------------------------------------------------------------TRVDATIVSQQFWPPLQGEDFTLHPKVSKDVDAFKDAYNVLRNPRSLEWNSSLGSVQLS-----IELEGEE----------------------------------REFNVSPLQATMILYF---EEKARWSVEELAAKLEISD------DLLLKHVSLWVNHGLVSFGS--------GRKELVASVSFQD---------------------------------TRCDDDS--------------MVEDVETAVSSDAQAEEDFKVLENYIVGMLSNYGSLTIQRIHNLLSTFARSGAQPYTKTISGLSVVLGKLVSKGKLELVGGQYQLA 775

[Close]

BLAST of NO29G01140 vs. NCBI_GenBank
Match: ETP38749.1 (hypothetical protein F442_13717 [Phytophthora parasitica P10297] >ETP38750.1 hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 281.6 bits (719), Expect = 1.000e-71
Identity = 256/794 (32.24%), Postives = 366/794 (46.10%), Query Frame = 0

Query:  278 RALRRLGWLPLVQSAVTQVMKGETERYIERTCKGVYDVPRLGQVGAWKDAVLMPWLERLMEGGEXXXXXXSNMVVTPSFNSKSKTASSSSFQEWRLRHAFSVYESFAGVRMLEMFDIIRDFPDSLPAVLELREALEVTQQHGQLAGLLRESMRSRLLHNGANTMQIIDVYIATIKALRELDPSDSILEAVAHPIRAYLQGRKDTVRCIVSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWMLISIYGSKDLFVSEYRLMLAEKLLNLNLNAKSWSDYDTDKEVIKLELLKKRFGEGGALQPCEIMIRDVEDSKRVNALVAARLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAATCVDATIVSHHFWPPLQEEELVLHPTMAGRMTDFASAYSVLKNPRKLEWKPQLGLVTLDLEFDCLEVEREEEGGREGGIQEWDEEAEKVVKAWRKEERRKKRVVARSFTVSPVHATLIMHFGKEEDDTGSGLEEERSQTELGQLTSLPLEVVARKMTFWVNQGIVSLSSTPSPIPSFASPSAAAAVEMAGGGLTSPPNFYLQQQQTQLQHQPHRPGEVYYKLITKQDPDGPDGQXXXXXXXXSFEDDDLEAAVSSDAQEAKETDVYISYVLGMLGTYGGRSARAIHDTLKIWAGGDQQTYSLHLGEVERILQRLVGEEKLEMVDGVYQLA 1072
            + L +L WL + + A+ +V+  + ++ ++ TC  VYD   L +V  W  + L+PWLE +M+                       T   +S ++WR   +  V + F  +R+ ++F+II++FPDS+PA+ +LR+ LE TQQH +L    R ++++RLL  GANT  I+D+Y++TIKA R LDP   +LEA++ P++ YL+ RKDTVRCIV SL                                        XXXXXXXXXXXXXXXXXXXXXXXXXXXX    L +L++IYGS++LFV+EYR+MLA+KLL+ NL      ++DTD++V  LELLK RFGE  +LQ CEIM+RD+EDSKR+N  V + +                                                                                               T VDATIVS  FWPPLQ E+  LHP ++  +  F  AY+VL+NPR LEW   LG V L      +E+E EE                                  R F VSP+ AT+I++F  EE D  S +EE  ++ E+        +++ + ++ WVN G+VS  S              A+V                                     T+ D D                 +D+E AVSSDAQ  ++  V  +Y++GML  YG  + + IH+ L  +A    Q Y+  +  +  +L +LV + KLE+V G YQLA
Sbjct:  195 QTLLQLEWLHVAEPALLRVLHSQIKKVVKSTCGEVYDELFLTEVEQWACSELLPWLEEIMQ-----------------------TKDEASTRKWRDILSRQVLQEFGSLRIKQLFEIIKEFPDSVPALEDLRQCLERTQQHVELLQEFRGALQARLLQPGANTSAILDIYVSTIKAFRLLDPKGVLLEALSDPVKEYLRKRKDTVRCIVQSL--------------TDEQNGDLFEELRRDNMRIIQHDDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDILRILVNIYGSRELFVNEYRMMLADKLLH-NL------EFDTDRDVQTLELLKLRFGE-DSLQQCEIMVRDIEDSKRLNVNVHSTMNKPESKAAVATETSSGVETDSQPALPGIPF-----------------------------------------------------------------TRVDATIVSQQFWPPLQGEDFTLHPKVSKDVDAFKDAYNVLRNPRSLEWNSSLGSVQLS-----IELEGEE----------------------------------REFNVSPLQATMILYF--EEKDRWS-VEELAAKLEISD------DLLLKHVSLWVNHGLVSFGS--------GRKELVASVSFQD---------------------------------TRCDDDS--------------MVEDVETAVSSDAQAEEDFKVLENYIVGMLSNYGSLTIQRIHNLLSTFARSGAQPYTKTISGLSVVLGKLVSKGKLELVGGQYQLA 775

[Close]

BLAST of NO29G01140 vs. NCBI_GenBank
Match: OWZ10966.1 (Anaphase-promoting complex subunit [Phytophthora megakarya])

HSP 1 Score: 275.4 bits (703), Expect = 7.500e-70
Identity = 252/795 (31.70%), Postives = 358/795 (45.03%), Query Frame = 0

Query:  278 RALRRLGWLPLVQSAVTQVMKGETERYIERTCKGVYDVPRLGQVGAWKDAVLMPWLERLMEGGEXXXXXXSNMVVTPSFNSKSKTASSSSFQEWRLRHAFSVYESFAGVRMLEMFDIIRDFPDSLPAVLELREALEVTQQHGQLAGLLRESMRSRLLHNGANTMQIIDVYIATIKALRELDPSDSILEAVAHPIRAYLQGRKDTVRCIVSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWMLISIYGSKDLFVSEYRLMLAEKLLNLNLNAKSWSDYDTDKEVIKLELLKKRFGEGGALQPCEIMIRDVEDSKRVNALVAARLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAATCVDATIVSHHFWPPLQEEELVLHPTMAGRMTDFASAYSVLKNPRKLEWKPQLGLVTLDLEFDCLEVEREEEGGREGGIQEWDEEAEKVVKAWRKEERRKKRVVARSFTVSPVHATLIMHFGKEEDDTGSGLEEERSQTELGQLTSLPLEVVARKMTFWVNQGIVSLSSTPSPIPSFAS-PSAAAAVEMAGGGLTSPPNFYLQQQQTQLQHQPHRPGEVYYKLITKQDPDGPDGQXXXXXXXXSFEDDDLEAAVSSDAQEAKETDVYISYVLGMLGTYGGRSARAIHDTLKIWAGGDQQTYSLHLGEVERILQRLVGEEKLEMVDGVYQLA 1072
            + L +L WL + + A+ +V+  + ++ +  TC  VYD   L QV  W  + L+PWL   M+                        A+S+ ++E   RH   V + F  +R+ ++F++I++FPDS+PA+ +LR+ LE TQQHG L    R ++++RLL  GANT  I+++Y++TIKA R LDP   +LEA++ P++ YL+ RKDTVRCIV SL                                        XXXXXXXXXXXXXXXXXXXXXXXXXXX     L +L++IYGS++LFV+EYR+MLA+KLL  NL      ++DTD +V  LELLK RFGE  +L  CEIM+RD+EDSKR+N  V + +                                                                                                  DATIVSH FWPPLQ E+ +LH T++  +  F  AY VL+NPR L+W P LG V L ++              EG                          V R FTVSP+ AT+I++F   ED     +EE  ++ E+        EV+ + ++ WVN G+VS +S    + + +S P                                           T+ D D                 ++LE AVS DA   ++  V  SYV+GML  +G  + + IH+ L  +A    Q Y+  +  +  +L  LV + KLE+V G YQLA
Sbjct:  187 QTLLQLQWLHVAEPALLRVLHLQIKKMVRSTCGEVYDELFLAQVEQWAGSELLPWLAESMQ--------------------TKDVAASNKWREILSRH---VLQEFGRLRITQLFEMIKEFPDSVPALEDLRQCLERTQQHGDLLQEFRSALQTRLLQPGANTSAILEIYVSTIKAFRLLDPKGVLLEALSDPVKEYLRKRKDTVRCIVQSL--------------TDEQHGDLFEELRRDNMRIIQHDDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDDILRILVNIYGSRELFVNEYRMMLADKLLQ-NL------EFDTDLDVQTLELLKLRFGE-DSLHQCEIMVRDIEDSKRLNLNVQSTMEHP----------------------------------------------------------------------------------------------ADATIVSHQFWPPLQGEDFMLHQTISKDIDAFKDAYHVLRNPRSLDWNPSLGSVQLSIDL-------------EG--------------------------VVREFTVSPLQATIILYF---EDKDRWNVEELAAKLEISD------EVLLKHVSLWVNHGLVSFASGRKELVASSSFPD------------------------------------------TRCDDDS--------------MMEELETAVSQDALAEEDLKVLESYVVGMLSNFGSLTIQRIHNMLSTFARSGAQPYTKTISGLSAVLSTLVSKGKLELVGGQYQLA 738

The following BLAST results are available for this feature:

BLAST of NO29G01140 vs. NCBI_GenBank

BLAST of NO29G01140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM21328.1	1.700e-82	48.04	anaphase-promoting complex subunit 2, partial [Nan...	[more]
GBG30278.1	3.400e-78	29.19	Anaphase-promoting complex subunit 2 [Aurantiochyt...	[more]
ETI40806.1	9.500e-73	32.37	hypothetical protein F443_13885 [Phytophthora para...	[more]
ETL34332.1	9.500e-73	32.37	hypothetical protein L916_13423 [Phytophthora para...	[more]
ETL87611.1	9.500e-73	32.37	hypothetical protein L917_13231 [Phytophthora para...	[more]
XP_008909305.1	9.500e-73	32.37	hypothetical protein PPTG_14091 [Phytophthora para...	[more]
ETK80916.1	2.800e-72	31.99	hypothetical protein L915_13525 [Phytophthora para...	[more]
ETP10554.1	2.800e-72	31.99	hypothetical protein F441_13820 [Phytophthora para...	[more]
ETP38749.1	1.000e-71	32.24	hypothetical protein F442_13717 [Phytophthora para...	[more]
OWZ10966.1	7.500e-70	31.70	Anaphase-promoting complex subunit [Phytophthora m...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL061	nonsL061	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR038	ncniR038	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR081	ngnoR081	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK005238	NSK005238	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO29G01140.1	NO29G01140.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|568358	gene_8289	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100374g1	gene9093	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO29G01140.1	NO29G01140.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO29G01140 ID=NO29G01140|Name=NO29G01140|organism=Nannochloropsis oceanica|type=gene|length=3406bp
ACAGGCACACAGCCCATGGCTCCAACTGCAGTTTCGTTCACTGGTGCATC
GTCTGCTGCTCCTGCCGCAGAAACCAGCATCACGGAAGCCGTCAAGGACG
CTTGGGAAGAATTGTACCAAGCGCTGGACCAATACGTCCTCTTGCCGTCC
TCGTCATCCCCGCAGCGGCATCAGTATGAGCAAGCATGCCCCCTCCAAAA
AGCGTGGTTGCAGTCGGTATTGCCTGCTCAAGCTTTGCGGGTCGTACTGG
ACTCGGGATTGGGTAGCTTGGTCTTGGAGTATGTTGCGGAGGGGCTGGAT
CAAGAGCTCGTCAAGGTGGTCCGACCAGCGTTCTGGCGGCACTTCCAGCA
GGAAAAACCTCAGCATGCGAAGAATGTCGACGACGAGGAGCATGATGAAC
AGCGGCAATGCCAGACAGGCTTCCCTGAATGGGTTTACACACGGATGCGT
GCTGCCTTGACCTGTGCTAGCCAAGCTCTACAAGAACGAGACCGAAAACT
CGCCTTATTAGGAGAGTTTCTTCGCCTGCCACACCAGACGCGGCAAGAGT
GCGCAATGTTGCATACGAGGTTTGCGGCAATTGTGTTCAATACTGCTCCG
AAGAAGGAAGGAGTAGTTTTTTGGGAGAGGTGGTGGGTGATATTTTTTAG
GACGTCGTTACGGGCGTGGCATAAGGCATGGAGGGAGCGAAGGCAAGGAC
GAGAACGAGGGGAGAGGAGGGGACGAAAGGAGGGTGACATGATGAGCGTC
GAAGATGTAGAAGAGGAGGAAGAGGAGGAGGAGGAGGTGGTGGAGGAGGA
AGAGGGGGCTTGTGTAGTGAGACAAGAGGAGGTGGAGGTCGCGTGGCGGG
CCTTGAGGAGACTGGGATGGTTGCCGTTGGTCCAGTCTGCCGTTACTCAA
GTCATGAAAGGAGAGACGGAGAGATACATAGAAAGAACGTGTAAAGGTGT
GTATGATGTGCCCAGACTGGGACAGGTTGGTGCGTGGAAGGACGCAGTGT
TGATGCCGTGGTTGGAGAGATTGATGGAAGGAGGGGAGGAGGGCGGGGAG
GAAGGGTCCAACATGGTAGTCACTCCCTCTTTCAACAGCAAGAGCAAAAC
TGCTTCTAGCTCTTCTTTCCAGGAATGGCGGCTTCGACATGCTTTTAGTG
TGTACGAGAGTTTTGCCGGGGTGCGGATGTTGGAGATGTTTGATATTATT
CGGGATTTTCCGGATTCGTTGCCCGCGGTGTTGGAGCTAAGAGAGGCCTT
AGAGGTGACACAGCAGCATGGGCAGCTGGCGGGGCTGCTGAGGGAGAGCA
TGCGGAGTAGATTGTTGCACAATGGTGCGAATACCATGCAGATCATCGAT
GTGTACATTGCCACGATCAAGgtgggcctctttctttttttcatttatta
gacacttttgatggtgtttgagtcggctttttgttgatcgtgacataacc
tgccacgcgatggaaaaaacaattgctcatccctgcaccctccatccctc
attcctccctccctccctccctcagGCCCTCCGCGAGCTGGATCCCTCCG
ATTCCATCCTCGAGGCCGTCGCTCATCCCATCCGCGCTTATCTGCAGGGT
AGAAAAGACACAGTGAGGTGCATTGTCAGCAGTCTCACTGATGAGGAAGG
AGGCGGAGATTTGTACGAAGAGTTAAGGAGGCAAGATGGGAGGTTGTTGG
AGGAAGAGGGAGAGGAGAGCGGGGGGGAGGACGGGGGGGGAAGAGAGGAG
GAGAAGGTTTGGATGCCGGCAAGAAGGGAAGCAGGGACGATGATGTCGGA
GAGGAGGAAAGGGGAAGGAAGGGATGCAGGAGGAGGGGGGGGAAGAGACA
TTTTGTGGATGCTAATTTCGATTTATGGGAGTAAGGATTTGTTTGTGTCT
GAGTATCGGCTGATGTTAGCGGAGAAACTGCTAAACTTGAATTTGAATGC
GAAATCGTGGAGTGACTATGATACAGACAAGGAGGTGATTAAGCTGGAAT
TGCTCAAGAAGAGATTTGGGGAGGGAGGAGCCTTGCAGCCGTGTGAGATC
ATGATCAGGGACGTGGAAGATAGTAAGAGGGTGAATGCTTTGGTGGCGGC
TAGGTTGAGAGAGAAGGCCCGGGGGAGGGGGAGGGGGAGGAGGGGATGGG
GGTGGTTTGGAAAGGGAGGAGTGGGCGGAGGAGACTGGAAGTTGAAGGTG
GAAGAGGGGTTAAAAATGGACAAGGCTCAATCCGCAGCAGCAGCTGTAGC
AGTCGATAGAAGACCCTTGGGAGGAGGAGGAGTGAGTGGAGGAGAAGGAA
GTGGTGGAAGAGAAGGAGAACGAGAAGGAGAAGGGCCGTCTGACATCGAA
GTAGCCATGGCGGCAGCTAAGGCGGAGGAGCAGCGAGCAGCGACGTGCGT
AGATGCCACGATTGTCTCGCACCATTTCTGGCCGCCGCTGCAAGAGGAGG
AGTTGGTCCTTCACCCAACCATGGCGGGGAGAATGACGGACTTCGCCTCT
GCATATTCCGTGCTGAAGAACCCGAGGAAGTTGGAGTGGAAGCCTCAGCT
GGGCTTAGTCACTTTGGATCTTGAATTTGATTGTTTGGAGGTAGAAAGGG
AGGAGGAGGGAGGGAGAGAGGGAGGGATACAGGAGTGGGACGAGGAGGCG
GAGAAGGTAGTGAAGGCCTGGAGGAAGGAGGAGAGGAGAAAGAAGCGGGT
GGTAGCTCGGTCATTCACCGTAAGTCCCGTGCATGCCACGCTGATCATGC
ATTTTGGAAAAGAAGAGGACGACACTGGCAGTGGTTTGGAGGAGGAACGA
AGCCAGACAGAGCTAGGGCAACTCACGAGCTTACCCTTGGAAGTCGTGGC
CCGCAAAATGACTTTCTGGGTCAACCAAGGTATCGTCTCCCTCTCCTCCA
CCCCTTCCCCCATCCCTTCCTTTGCCTCGCCCTCGGCGGCAGCAGCAGTG
GAAATGGCAGGAGGAGGCTTGACGTCGCCGCCCAATTTTTATCTGCAGCA
GCAGCAAACACAACTTCAGCATCAACCACATCGACCAGGGGAAGTCTACT
ATAAATTGATCACGAAGCAAGATCCCGATGGACCAGATGGACAAGGACAC
GGAGGAGGACGAGGAGGATCGTTTGAAGATGATGATTTGGAAGCGGCTGT
GTCGTCTGACGCGCAAGAAGCGAAAGAGACTGACGTGTACATTTCATATG
TTTTGGGGATGCTTGGGACGTATGGAGGGAGGTCAGCGAGGGCAATTCAT
GACACGTTGAAGATATGGGCAGGGGGGGATCAACAGACTTATAGCTTGCA
CCTTGGAGAGGTCGAAAGGATTCTGCAGAGGCTTGTGGGGGAAGAGAAGC
TGGAGATGGTGGATGGGGTGTACCAGTTGGCGAATCGACCGGCGCACCAT
CGCTAA

protein sequence of NO29G01140.1

>NO29G01140.1-protein ID=NO29G01140.1-protein|Name=NO29G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1079bp
MAPTAVSFTGASSAAPAAETSITEAVKDAWEELYQALDQYVLLPSSSSPQ
RHQYEQACPLQKAWLQSVLPAQALRVVLDSGLGSLVLEYVAEGLDQELVK
VVRPAFWRHFQQEKPQHAKNVDDEEHDEQRQCQTGFPEWVYTRMRAALTC
ASQALQERDRKLALLGEFLRLPHQTRQECAMLHTRFAAIVFNTAPKKEGV
VFWERWWVIFFRTSLRAWHKAWRERRQGRERGERRGRKEGDMMSVEDVEE
EEEEEEEVVEEEEGACVVRQEEVEVAWRALRRLGWLPLVQSAVTQVMKGE
TERYIERTCKGVYDVPRLGQVGAWKDAVLMPWLERLMEGGEEGGEEGSNM
VVTPSFNSKSKTASSSSFQEWRLRHAFSVYESFAGVRMLEMFDIIRDFPD
SLPAVLELREALEVTQQHGQLAGLLRESMRSRLLHNGANTMQIIDVYIAT
IKALRELDPSDSILEAVAHPIRAYLQGRKDTVRCIVSSLTDEEGGGDLYE
ELRRQDGRLLEEEGEESGGEDGGGREEEKVWMPARREAGTMMSERRKGEG
RDAGGGGGRDILWMLISIYGSKDLFVSEYRLMLAEKLLNLNLNAKSWSDY
DTDKEVIKLELLKKRFGEGGALQPCEIMIRDVEDSKRVNALVAARLREKA
RGRGRGRRGWGWFGKGGVGGGDWKLKVEEGLKMDKAQSAAAAVAVDRRPL
GGGGVSGGEGSGGREGEREGEGPSDIEVAMAAAKAEEQRAATCVDATIVS
HHFWPPLQEEELVLHPTMAGRMTDFASAYSVLKNPRKLEWKPQLGLVTLD
LEFDCLEVEREEEGGREGGIQEWDEEAEKVVKAWRKEERRKKRVVARSFT
VSPVHATLIMHFGKEEDDTGSGLEEERSQTELGQLTSLPLEVVARKMTFW
VNQGIVSLSSTPSPIPSFASPSAAAAVEMAGGGLTSPPNFYLQQQQTQLQ
HQPHRPGEVYYKLITKQDPDGPDGQGHGGGRGGSFEDDDLEAAVSSDAQE
AKETDVYISYVLGMLGTYGGRSARAIHDTLKIWAGGDQQTYSLHLGEVER
ILQRLVGEEKLEMVDGVYQLANRPAHHR*

Synonyms

Publications