NO29G01100, NO29G01100 (gene) Nannochloropsis oceanica

Overview
NameNO29G01100
Unique NameNO29G01100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1068
Alignment locationchr29:366277..367344 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:366277..367344 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO29G01100 vs. NCBI_GenBank
Match: EWM21318.1 (hypothetical protein Naga_100214g11 [Nannochloropsis gaditana])

HSP 1 Score: 270.4 bits (690), Expect = 8.000e-69
Identity = 183/342 (53.51%), Postives = 219/342 (64.04%), Query Frame = 0 
Query:   17 EHQDLKKESLSFVVLEQDPDAKEALCFAVIEGFPTMIFSKDAQPETRHDDRLGFRYVYFNALMDHASGLKRLDMIGQNAYDHFNPTDAQQYFVDDRQVMALPPNRDEEAAVFEIYEPWVVPTGKHVNHTRKKNLGDAYMLGTFLVVDDVHLGKVQEKRRPVLLPLSEAPARPASYFFSEALEHLPVPVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVDKYLLGLNSFAVPGEILERSNVALGRGD---RGRARQHGEGQRGEAEQIPLWHIMQRPLRCAE--REGERGNDTGDMIIVYVLWPQGDERKAAAAHAK 354
            +HQ ++++     +   D   KEALCFA++E FPTM+F+KDA P TR DD+ GF YVYFNALMDHASG  RLDMIGQNA +HFN  DA+QYF+DDR+VMAL  +  +  AV + YEPW VP+G HVNHTRK+NL DA+MLGTFL+VD+VH GK   + R  L PLS  P  P+  FFS A   L  PV XXXXXXXXXXXXXXXXXXXXXXXXXX                            V  +LLGLN  A PG ILE SNV LG  +   +  AR    G+ G      LWHIMQR L  AE  + GE  +  G +++VYVLWPQGDE +A+ A AK
Sbjct:   26 QHQPIEEQGTGIEL--HDQQQKEALCFAILEHFPTMVFAKDADPRTRMDDQTGFCYVYFNALMDHASGFNRLDMIGQNALNHFNSVDARQYFLDDRRVMAL--SSQDPDAVLDFYEPWQVPSGNHVNHTRKRNLQDAFMLGTFLIVDEVHTGKKGRRCRQALPPLSTPPPSPSDSFFSRAFYDL--PVXXXXXXXXXXXXXXXXXXXXXXXXXXXGLMKNRLFCHLFSPEAAHVSNAECLDTLVTSHLLGLNHLAEPGLILEWSNVVLGEREVEYKASARGAKGGKGG------LWHIMQRRLGDAELGKGGEVVSADG-LVLVYVLWPQGDEGQASLARAK 354
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BLAST of NO29G01100 vs. NCBI_GenBank
Match: PIS11305.1 (two-component hybrid sensor and regulator, partial [Bdellovibrio sp. CG10_big_fil_rev_8_21_14_0_10_47_8])

HSP 1 Score: 65.5 bits (158), Expect = 3.900e-7
Identity = 53/166 (31.93%), Postives = 76/166 (45.78%), Query Frame = 0 
Query:   24 ESLSFVVLEQDPDAK-----EALCFAVIEGFPTMIFSKDAQPETRHDDRLGFRYVYFNALMDHASGLKRLDMIGQNAYDHFNPTDAQQYFVDDRQVMALPPNRDEEAAVFEIYEPWVVPTGKHVNHTRK-----KNLGDAYMLGTFLVVDDVHLGKVQEKRRPVLL 180
            +SLS +V E+   A+     E+   +VIE  P MIF KDAQ           R+V FN   +   G  R +++G+N  D F P  AQ +   DRQV+A        + V    EP     G    HT+K     KN    Y+LG   + +D+   K  EK++  L+
Sbjct:   60 DSLSRIVQEKQKVAEKLRESESFLESVIENIPNMIFVKDAQ---------DLRFVRFNKAGEQLLGQSRANLLGKNDLDFFPPEQAQAFTQKDRQVLA------SHSVVDIPEEPLSTSDGIRYLHTKKIPLFDKNGKAQYLLG---ISEDITQKKAAEKQKMELV 207
The following BLAST results are available for this feature:
BLAST of NO29G01100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM21318.18.000e-6953.51hypothetical protein Naga_100214g11 [Nannochlorops... [more]
PIS11305.13.900e-731.93two-component hybrid sensor and regulator, partial... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005232NSK005232Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01100.1NO29G01100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601440gene_8285Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100214g11gene9097Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01100.1NO29G01100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01100 ID=NO29G01100|Name=NO29G01100|organism=Nannochloropsis oceanica|type=gene|length=1068bp
ATGACCGGCACTCCCGACACTTCTTCTCCTCCCTCCGCCGGCCCGCGAGA
GCACCAAGACTTGAAGAAGGAATCCTTGAGCTTCGTCGTCCTTGAACAAG
ACCCGGACGCAAAGGAAGCCTTGTGCTTCGCTGTCATCGAGGGGTTTCCT
ACTATGATCTTCTCCAAAGATGCCCAACCCGAAACTCGCCATGACGATCG
CCTTGGCTTTCGCTATGTCTATTTCAATGCCTTGATGGACCATGCGAGCG
GCCTGAAGCGCTTGGACATGATCGGGCAGAATGCCTACGACCATTTCAAC
CCCACCGATGCCCAGCAGTATTTTGTAGACGATCGACAAGTCATGGCTCT
CCCTCCGAATCGAGACGAAGAGGCTGCTGTTTTTGAAATTTACGAGCCTT
GGGTAGTCCCGACAGGGAAACACGTGAATCACACGCGAAAAAAGAACCTG
GGGGATGCTTACATGCTTGGGACGTTTTTGGTTGTGGACGATGTGCACTT
AGGAAAGGTTCAAGAGAAACGGCGTCCCGTGCTACTGCCTCTGTCGGAGG
CTCCAGCGCGCCCCGCGTCTTATTTTTTTTCTGAGGCTTTGGAGCATTTG
CCTGTGCCCGTGCTGGTAGTATCGGGGGCATCGTCGTCTCCTTCTTCCTC
GTCCTCCTTCTCATCCTCCCCTCCGGCAATCCTTTTGAAGAATCGGGCCT
ATCACCATGCGTTTGGCTCTCTTGAGACTGCGACTGCTGCAGCCGCAAGC
GAGAATGAGGGAGGCGGAGGGACAGCTGTTGACAAGTACCTCCTCGGCCT
TAACTCGTTTGCAGTGCCGGGGGAGATATTGGAACGGAGCAACGTTGCGT
TGGGTCGAGGAGACAGAGGACGAGCAAGGCAACATGGGGAGGGGCAACGA
GGGGAGGCAGAACAAATACCCTTATGGCACATTATGCAACGGCCTTTGCG
TTGCGCGGAAAGGGAGGGAGAGCGCGGAAATGATACAGGCGACATGATCA
TAGTGTACGTGCTGTGGCCTCAGGGCGATGAAAGGAAGGCAGCGGCTGCC
CATGCAAAATTAAAATGA
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protein sequence of NO29G01100.1

>NO29G01100.1-protein ID=NO29G01100.1-protein|Name=NO29G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MTGTPDTSSPPSAGPREHQDLKKESLSFVVLEQDPDAKEALCFAVIEGFP
TMIFSKDAQPETRHDDRLGFRYVYFNALMDHASGLKRLDMIGQNAYDHFN
PTDAQQYFVDDRQVMALPPNRDEEAAVFEIYEPWVVPTGKHVNHTRKKNL
GDAYMLGTFLVVDDVHLGKVQEKRRPVLLPLSEAPARPASYFFSEALEHL
PVPVLVVSGASSSPSSSSSFSSSPPAILLKNRAYHHAFGSLETATAAAAS
ENEGGGGTAVDKYLLGLNSFAVPGEILERSNVALGRGDRGRARQHGEGQR
GEAEQIPLWHIMQRPLRCAEREGERGNDTGDMIIVYVLWPQGDERKAAAA
HAKLK*
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Synonyms
Publications