NO29G01090, NO29G01090 (gene) Nannochloropsis oceanica

Overview
NameNO29G01090
Unique NameNO29G01090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1062
Alignment locationchr29:364676..365737 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:364676..365737 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO29G01090 vs. NCBI_GenBank
Match: EWM21317.1 (uncharacterized protein Naga_100214g10 [Nannochloropsis gaditana])

HSP 1 Score: 256.1 bits (653), Expect = 1.100e-64
Identity = 120/140 (85.71%), Postives = 131/140 (93.57%), Query Frame = 0 
Query:   75 VPRRPIVRYQSSTLSLDEGTSSATLTQLFSYYNPNYYTVQWNNLHIQVEDQDTNTPLGYGWHNTSFPVRALSSRSAGVNITITAAFSDLAPLIKEQCADRNYVTLASYGTVNAYLWSQNFGSIRIGPFTETIDCGGAAKL 215
            VPRRPIVRYQSSTLSLDE TSS TL+QLFSYYNPNYYTVQWNNLHIQVEDQ++ TPLGYGWHN SFPVRALSSRS+ VNITITAAFS+LAPLIK QCA++NYVTLASYGTVNA++WSQN G+IRIGPFTE IDCGGAA +
Sbjct:  132 VPRRPIVRYQSSTLSLDESTSSVTLSQLFSYYNPNYYTVQWNNLHIQVEDQESATPLGYGWHNASFPVRALSSRSSAVNITITAAFSELAPLIKAQCAEKNYVTLASYGTVNAWIWSQNLGAIRIGPFTEVIDCGGAATM 271
The following BLAST results are available for this feature:
BLAST of NO29G01090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21317.11.100e-6485.71uncharacterized protein Naga_100214g10 [Nannochlor... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005231NSK005231Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01090.1NO29G01090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601438gene_8284Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100214g10gene9098Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01090.1NO29G01090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01090 ID=NO29G01090|Name=NO29G01090|organism=Nannochloropsis oceanica|type=gene|length=1062bp
ATGTCAACCTCCACCAACTCCTCTTCCCATTTCTACGTGGCTCTGCCTGC
TGATTCCACCACCAGCACTGCCAGCGCCAGTACAACAGCCGCTGCCGCCG
GCGCTGGCTTCCCATCCTCTTCCTCCCCTTCCTCACGCGTCGTGCGGACC
AAGCGCCGCTGCCTTGGCTTGAGCAGCGGCTGTCTCCTCATCCTGCTTCT
GGGGCTCTTGCTATTCTTTCTGGTACCCCGCCGGCCTATTGTGAGGTATC
AGAGCTCGACGCTGTCCTTGGATGAGGGGACGTCGAGCGCAACCTTGACC
CAGCTCTTCTCCTACTACAACCCGAATTATTATACTGTgtacgtagatgg
cgtgtctgtaccttttgcacgcgcagccctctatgtctctcctttttgtc
ttgaagtgggtaccctctgggaattgtgggagggatgtgacccgggacga
ctgaatgtttcttatcacatccatccctccttccctctcttcttctcagG
CAATGGAATAACCTTCACATCCAAGTCGAAGACCAAGACACCAATACCCC
TCTCGGCTACGGCTGGCACAATACGAGTTTTCCCGTTCGAGCCCTTTCTT
CCCGTTCCGCGGGTGTGAATATCACGATTACTGCTGCTTTCTCCGACTTG
GCGCCTCTCATCAAGGAGCAGTGTGCAGATCGAAACTACGTCACCCTGGC
GTCCTACGgtaagtcctccctcgttgtcaccgtccctccctctttccccc
tcttcctctaccccacagtcatgttttccttctctccgagacgcattcgt
tgatcaacataccgacctattcattcttttttccccaatcaaacatccat
ctaattcgattacagGCACCGTGAATGCGTACCTCTGGAGCCAAAACTTC
GGGAGTATTCGGATAGGCCCTTTCACGGAGACCATTGATTGTGGTGGTGC
TGCCAAGCTGCAGTACCGCCGTCGACCACAGCAACAGCAGCAGCAGCAGC
AGCAGCAGCAGAAGGAGCGACGATCAGCAGGGCCTGAGCAGGGGGGACAA
TGGTGGTTGTAA
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protein sequence of NO29G01090.1

>NO29G01090.1-protein ID=NO29G01090.1-protein|Name=NO29G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MSTSTNSSSHFYVALPADSTTSTASASTTAAAAGAGFPSSSSPSSRVVRT
KRRCLGLSSGCLLILLLGLLLFFLVPRRPIVRYQSSTLSLDEGTSSATLT
QLFSYYNPNYYTVQWNNLHIQVEDQDTNTPLGYGWHNTSFPVRALSSRSA
GVNITITAAFSDLAPLIKEQCADRNYVTLASYGTVNAYLWSQNFGSIRIG
PFTETIDCGGAAKLQYRRRPQQQQQQQQQQQKERRSAGPEQGGQWWL*
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Synonyms
Publications