NO29G01070, NO29G01070 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO29G01070
Unique Name	NO29G01070
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2222
Alignment location	chr29:360024..362245 +

Link to JBrowse

Properties


Property Name	Value
Description	Eukaryotic initiation factor 4a-iii

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr29	genome	chr29:360024..362245 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0005524	ATP binding
GO:0016787	hydrolase activity
GO:0008135	translation factor activity, RNA binding
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR014014	RNA_helicase_DEAD_Q_motif
IPR011545	DEAD/DEAH_box_helicase_dom
IPR014001	Helicase_ATP-bd
IPR001650	Helicase_C

Homology

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BLAST of NO29G01070 vs. NCBI_GenBank
Match: EWM21323.1 (eukaryotic initiation factor 4a-iii [Nannochloropsis gaditana])

HSP 1 Score: 741.9 bits (1914), Expect = 1.100e-210
Identity = 382/409 (93.40%), Postives = 393/409 (96.09%), Query Frame = 0

Query:    1 MSRKRTASGSGEKEETQYDATXXXXXXXXXXXXVKATFEAMGLRPELLRGIYDYGFEKPSAIQQRAVLPIIKGYDIIAQSQSGTGKTAVFSMGILQRLDTTSNDTQALVLSPTRELAEQTQKVLLSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQFFGTIIDEMPLQIGDLV 410
            MSRKR + G   +EE Q+DAT XXXXXXXX   VK TFEAMGLR ELLRGIYDYGFEKPSAIQQRAVLPIIKG+D+IAQSQSGTGKTAVFSMGILQRLDT+SNDTQALVLSPTRELAEQTQKV+LSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQ++ T IDEMP+ + DLV
Sbjct:    1 MSRKRASGGGRSEEEIQFDATEXXXXXXXXDVAVKPTFEAMGLREELLRGIYDYGFEKPSAIQQRAVLPIIKGHDVIAQSQSGTGKTAVFSMGILQRLDTSSNDTQALVLSPTRELAEQTQKVILSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQYYSTQIDEMPMSVHDLV 409

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BLAST of NO29G01070 vs. NCBI_GenBank
Match: ETI35151.1 (eukaryotic initiation factor 4A-III [Phytophthora parasitica P1569] >ETK75405.1 eukaryotic initiation factor 4A-III [Phytophthora parasitica] >ETL28845.1 eukaryotic initiation factor 4A-III [Phytophthora parasitica] >ETM35292.1 eukaryotic initiation factor 4A-III [Phytophthora parasitica] >ETO63908.1 eukaryotic initiation factor 4A-III [Phytophthora parasitica P1976] >ETP04981.1 eukaryotic initiation factor 4A-III [Phytophthora parasitica CJ01A1])

HSP 1 Score: 659.4 bits (1700), Expect = 7.000e-186
Identity = 317/373 (84.99%), Postives = 356/373 (95.44%), Query Frame = 0

Query:   37 TFEAMGLRPELLRGIYDYGFEKPSAIQQRAVLPIIKGYDIIAQSQSGTGKTAVFSMGILQRLDTTSNDTQALVLSPTRELAEQTQKVLLSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQFFGTIIDEMPLQIGDLV 410
            TFEAMGL+ +LLRGIY YGFEKPSAIQQRA+ P I+G D+IAQSQSGTGKTAVFS+ ILQ LDT+SN+TQALV+SPTRELAEQTQKV+L+LGD+MNVQCHACIGGKS+GEDIRRLD+GVQVVSGTPGR+FDMIRRRNL+T+++KMLVIDEADEMLNKGFKEQIYDIYRYLPP+TQV+L+SAT+PQEVLD+T+KFMNEP+KVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT++KVDWL +KM EANFTVSAMHGDMPQKER+AIM+EFRSG +RVLI TDVWGRGLDVQQVSLVI YDLPNNRELYIHRIGRSGRFGRKGVAINFV++DDI ILRDIEQ++ T IDEMP+ + DL+
Sbjct:   65 TFEAMGLKEDLLRGIYSYGFEKPSAIQQRAIKPAIQGRDLIAQSQSGTGKTAVFSISILQSLDTSSNETQALVISPTRELAEQTQKVVLALGDFMNVQCHACIGGKSVGEDIRRLDFGVQVVSGTPGRIFDMIRRRNLRTRNIKMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVLLVSATMPQEVLDLTRKFMNEPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMREANFTVSAMHGDMPQKERDAIMQEFRSGGSRVLITTDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKDDDIRILRDIEQYYSTQIDEMPMNVADLI 437

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BLAST of NO29G01070 vs. NCBI_GenBank
Match: XP_008913147.1 (eukaryotic initiation factor 4A-III [Phytophthora parasitica INRA-310] >ETL82085.1 eukaryotic initiation factor 4A-III [Phytophthora parasitica] >ETN01601.1 eukaryotic initiation factor 4A-III [Phytophthora parasitica INRA-310] >ETP33127.1 eukaryotic initiation factor 4A-III [Phytophthora parasitica P10297])

HSP 1 Score: 659.4 bits (1700), Expect = 7.000e-186
Identity = 317/373 (84.99%), Postives = 356/373 (95.44%), Query Frame = 0

Query:   37 TFEAMGLRPELLRGIYDYGFEKPSAIQQRAVLPIIKGYDIIAQSQSGTGKTAVFSMGILQRLDTTSNDTQALVLSPTRELAEQTQKVLLSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQFFGTIIDEMPLQIGDLV 410
            TFEAMGL+ +LLRGIY YGFEKPSAIQQRA+ P I+G D+IAQSQSGTGKTAVFS+ ILQ LDT+SN+TQALV+SPTRELAEQTQKV+L+LGD+MNVQCHACIGGKS+GEDIRRLD+GVQVVSGTPGR+FDMIRRRNL+T+++KMLVIDEADEMLNKGFKEQIYDIYRYLPP+TQV+L+SAT+PQEVLD+T+KFMNEP+KVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT++KVDWL +KM EANFTVSAMHGDMPQKER+AIM+EFRSG +RVLI TDVWGRGLDVQQVSLVI YDLPNNRELYIHRIGRSGRFGRKGVAINFV++DDI ILRDIEQ++ T IDEMP+ + DL+
Sbjct:   63 TFEAMGLKEDLLRGIYSYGFEKPSAIQQRAIKPAIQGRDLIAQSQSGTGKTAVFSISILQSLDTSSNETQALVISPTRELAEQTQKVVLALGDFMNVQCHACIGGKSVGEDIRRLDFGVQVVSGTPGRIFDMIRRRNLRTRNIKMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVLLVSATMPQEVLDLTRKFMNEPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMREANFTVSAMHGDMPQKERDAIMQEFRSGGSRVLITTDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKDDDIRILRDIEQYYSTQIDEMPMNVADLI 435

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BLAST of NO29G01070 vs. NCBI_GenBank
Match: OWZ23544.1 (Eukaryotic initiation factor 4A-III [Phytophthora megakarya])

HSP 1 Score: 659.4 bits (1700), Expect = 7.000e-186
Identity = 317/373 (84.99%), Postives = 356/373 (95.44%), Query Frame = 0

Query:   37 TFEAMGLRPELLRGIYDYGFEKPSAIQQRAVLPIIKGYDIIAQSQSGTGKTAVFSMGILQRLDTTSNDTQALVLSPTRELAEQTQKVLLSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQFFGTIIDEMPLQIGDLV 410
            TFEAMGL+ +LLRGIY YGFEKPSAIQQRA+ P I+G D+IAQSQSGTGKTAVFS+ ILQ LDT+SN+TQALV+SPTRELAEQTQKV+L+LGD+MNVQCHACIGGKS+GEDIRRLD+GVQVVSGTPGR+FDMIRRRNL+T+++KMLVIDEADEMLNKGFKEQIYDIYRYLPP+TQV+L+SAT+PQEVLD+T+KFMNEP+KVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT++KVDWL +KM EANFTVSAMHGDMPQKER+AIM+EFRSG +RVLI TDVWGRGLDVQQVSLVI YDLPNNRELYIHRIGRSGRFGRKGVAINFV++DDI ILRDIEQ++ T IDEMP+ + DL+
Sbjct:   34 TFEAMGLKEDLLRGIYSYGFEKPSAIQQRAIKPAIQGRDLIAQSQSGTGKTAVFSISILQSLDTSSNETQALVISPTRELAEQTQKVVLALGDFMNVQCHACIGGKSVGEDIRRLDFGVQVVSGTPGRIFDMIRRRNLRTRNIKMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVLLVSATMPQEVLDLTRKFMNEPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMREANFTVSAMHGDMPQKERDAIMQEFRSGGSRVLITTDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKDDDIRILRDIEQYYSTQIDEMPMNVADLI 406

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BLAST of NO29G01070 vs. NCBI_GenBank
Match: POM73622.1 (Eukaryotic initiation factor 4A-III [Phytophthora palmivora var. palmivora] >POM73939.1 Eukaryotic initiation factor 4A-III [Phytophthora palmivora var. palmivora])

HSP 1 Score: 659.4 bits (1700), Expect = 7.000e-186
Identity = 317/373 (84.99%), Postives = 356/373 (95.44%), Query Frame = 0

Query:   37 TFEAMGLRPELLRGIYDYGFEKPSAIQQRAVLPIIKGYDIIAQSQSGTGKTAVFSMGILQRLDTTSNDTQALVLSPTRELAEQTQKVLLSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQFFGTIIDEMPLQIGDLV 410
            TFEAMGL+ +LLRGIY YGFEKPSAIQQRA+ P I+G D+IAQSQSGTGKTAVFS+ ILQ LDT+SN+TQALV+SPTRELAEQTQKV+L+LGD+MNVQCHACIGGKS+GEDIRRLD+GVQVVSGTPGR+FDMIRRRNL+T+++KMLVIDEADEMLNKGFKEQIYDIYRYLPP+TQV+L+SAT+PQEVLD+T+KFMNEP+KVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT++KVDWL +KM EANFTVSAMHGDMPQKER+AIM+EFRSG +RVLI TDVWGRGLDVQQVSLVI YDLPNNRELYIHRIGRSGRFGRKGVAINFV++DDI ILRDIEQ++ T IDEMP+ + DL+
Sbjct:   34 TFEAMGLKEDLLRGIYSYGFEKPSAIQQRAIKPAIQGRDLIAQSQSGTGKTAVFSISILQSLDTSSNETQALVISPTRELAEQTQKVVLALGDFMNVQCHACIGGKSVGEDIRRLDFGVQVVSGTPGRIFDMIRRRNLRTRNIKMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVLLVSATMPQEVLDLTRKFMNEPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMREANFTVSAMHGDMPQKERDAIMQEFRSGGSRVLITTDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKDDDIRILRDIEQYYSTQIDEMPMNVADLI 406

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BLAST of NO29G01070 vs. NCBI_GenBank
Match: CBJ29803.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 659.1 bits (1699), Expect = 9.200e-186
Identity = 321/376 (85.37%), Postives = 354/376 (94.15%), Query Frame = 0

Query:   34 VKATFEAMGLRPELLRGIYDYGFEKPSAIQQRAVLPIIKGYDIIAQSQSGTGKTAVFSMGILQRLDTTSNDTQALVLSPTRELAEQTQKVLLSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQFFGTIIDEMPLQIGDLV 410
            V   F++MGL+ ELLRG+Y YGFE+PSA+QQRAV PI  G D+IAQSQSGTGKTAVFSMGILQ LDTTS+DTQALVLSPTRELAEQTQKV+L+LGD+MNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNL+T++L+MLVIDEADEMLNKGFKEQIYDIYRYLPP+TQVVLISAT+PQEVLDMTKKFMN P+K+LVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLT+TQAVIFCNT++KVDWL  KM E NFTVS+MHGDMPQKER+AIMEEFRSG +RVLIATDVWGRGLDVQQVSLVI YDLPNNRELYIHRIGRSGRFGRKGVAINFV++DD+ ILRDIEQ++ T IDEMP+ I D++
Sbjct:   27 VVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPITSGRDVIAQSQSGTGKTAVFSMGILQMLDTTSSDTQALVLSPTRELAEQTQKVILALGDFMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLRTRNLQMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVVLISATMPQEVLDMTKKFMNMPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTVTQAVIFCNTKRKVDWLTAKMREVNFTVSSMHGDMPQKERDAIMEEFRSGRSRVLIATDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDVRILRDIEQYYSTQIDEMPMNITDML 402

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BLAST of NO29G01070 vs. NCBI_GenBank
Match: XP_002998253.1 (eukaryotic initiation factor 4A-III, putative [Phytophthora infestans T30-4] >EEY70599.1 eukaryotic initiation factor 4A-III, putative [Phytophthora infestans T30-4])

HSP 1 Score: 659.1 bits (1699), Expect = 9.200e-186
Identity = 317/373 (84.99%), Postives = 356/373 (95.44%), Query Frame = 0

Query:   37 TFEAMGLRPELLRGIYDYGFEKPSAIQQRAVLPIIKGYDIIAQSQSGTGKTAVFSMGILQRLDTTSNDTQALVLSPTRELAEQTQKVLLSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQFFGTIIDEMPLQIGDLV 410
            TFEAMGL+ +LLRGIY YGFEKPSAIQQRA+ P I+G D+IAQSQSGTGKTAVFS+ ILQ LDT+SN+TQALV+SPTRELAEQTQKV+L+LGD+MNVQCHACIGGKS+GEDIRRLD+GVQVVSGTPGR+FDMIRRRNL+T+++KMLVIDEADEMLNKGFKEQIYDIYRYLPP+TQV+L+SAT+PQEVLD+T+KFMNEP+KVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT++KVDWL +KM EANFTVSAMHGDMPQKER+AIM+EFRSG +RVLI TDVWGRGLDVQQVSLVI YDLPNNRELYIHRIGRSGRFGRKGVAINFV++DDI ILRDIEQ++ T IDEMP+ + DL+
Sbjct:   34 TFEAMGLKEDLLRGIYSYGFEKPSAIQQRAIKPAIQGRDLIAQSQSGTGKTAVFSISILQSLDTSSNETQALVVSPTRELAEQTQKVVLALGDFMNVQCHACIGGKSVGEDIRRLDFGVQVVSGTPGRIFDMIRRRNLRTRNIKMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVLLVSATMPQEVLDLTRKFMNEPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMREANFTVSAMHGDMPQKERDAIMQEFRSGGSRVLITTDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKDDDIRILRDIEQYYSTQIDEMPMNVADLI 406

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BLAST of NO29G01070 vs. NCBI_GenBank
Match: XP_009532514.1 (hypothetical protein PHYSODRAFT_352190 [Phytophthora sojae] >EGZ12181.1 hypothetical protein PHYSODRAFT_352190 [Phytophthora sojae])

HSP 1 Score: 658.7 bits (1698), Expect = 1.200e-185
Identity = 317/376 (84.31%), Postives = 356/376 (94.68%), Query Frame = 0

Query:   34 VKATFEAMGLRPELLRGIYDYGFEKPSAIQQRAVLPIIKGYDIIAQSQSGTGKTAVFSMGILQRLDTTSNDTQALVLSPTRELAEQTQKVLLSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQFFGTIIDEMPLQIGDLV 410
            V  TFEAMGL+ +LLRGIY YGFEKPSAIQQRA+ P I+G D+IAQSQSGTGKTAVFS+ +LQ LDT+SN+TQALV+SPTRELAEQTQKV+L+LGD+MNVQCHACIGGKS+GEDIRRLD+GVQVVSGTPGR+FDMIRRRNL+T+++KMLVIDEADEMLNKGFKEQIYDIYRYLPP+TQV+L+SAT+PQEVLD+T+KFMNEP+KVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT++KVDWL  KM EANFTVSAMHGDMPQKER+AIM+EFRSG +RVLI TDVWGRGLDVQQVSLVI YDLPNNRELYIHRIGRSGRFGRKGVAINFV++DDI ILRDIEQ++ T IDEMP+ + DL+
Sbjct:   32 VYPTFEAMGLKEDLLRGIYSYGFEKPSAIQQRAIKPAIQGRDLIAQSQSGTGKTAVFSISVLQSLDTSSNETQALVISPTRELAEQTQKVVLALGDFMNVQCHACIGGKSVGEDIRRLDFGVQVVSGTPGRIFDMIRRRNLRTRNIKMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVLLVSATMPQEVLDLTRKFMNEPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTAKMREANFTVSAMHGDMPQKERDAIMQEFRSGGSRVLITTDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKDDDIRILRDIEQYYSTQIDEMPMNVADLI 407

[Close]

BLAST of NO29G01070 vs. NCBI_GenBank
Match: XP_024575737.1 (eukaryotic initiation factor 4a-iii [Plasmopara halstedii] >CEG39368.1 eukaryotic initiation factor 4a-iii [Plasmopara halstedii])

HSP 1 Score: 657.9 bits (1696), Expect = 2.000e-185
Identity = 316/376 (84.04%), Postives = 357/376 (94.95%), Query Frame = 0

Query:   34 VKATFEAMGLRPELLRGIYDYGFEKPSAIQQRAVLPIIKGYDIIAQSQSGTGKTAVFSMGILQRLDTTSNDTQALVLSPTRELAEQTQKVLLSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQFFGTIIDEMPLQIGDLV 410
            V  TFEAMGL+ +LLRGIY YGFEKPSAIQQRA+ P I+G D+IAQSQSGTGKTAVFS+ ILQ LDT+SN+TQALV+SPTRELAEQTQKV+L+LGD+MNVQCHACIGGKS+GEDIRRLD+GVQVVSGTPGR+FDMIRRRNL+T+++K+LVIDEADEMLNKGFKEQIYDIYRYLPP+TQV+L+SAT+PQEVLD+T+KFMNEP+KVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT++KVDWL +KM EANFTV+AMHGDMPQKER+AIM+EFRSG +RVLI TDVWGRGLDVQQVSLVI YDLPNNRELYIHRIGRSGRFGRKGVAINFV++DDI ILRDIEQ++ T IDEMP+ + DL+
Sbjct:   30 VYPTFEAMGLKEDLLRGIYSYGFEKPSAIQQRAIKPAIQGRDLIAQSQSGTGKTAVFSISILQSLDTSSNETQALVISPTRELAEQTQKVVLALGDFMNVQCHACIGGKSVGEDIRRLDFGVQVVSGTPGRIFDMIRRRNLRTRNIKLLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVLLVSATMPQEVLDLTRKFMNEPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMREANFTVAAMHGDMPQKERDAIMQEFRSGGSRVLITTDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKDDDIRILRDIEQYYSTQIDEMPMNVADLI 405

[Close]

BLAST of NO29G01070 vs. NCBI_GenBank
Match: OQR94325.1 (eukaryotic initiation factor 4A-III [Achlya hypogyna])

HSP 1 Score: 655.6 bits (1690), Expect = 1.000e-184
Identity = 319/376 (84.84%), Postives = 355/376 (94.41%), Query Frame = 0

Query:   34 VKATFEAMGLRPELLRGIYDYGFEKPSAIQQRAVLPIIKGYDIIAQSQSGTGKTAVFSMGILQRLDTTSNDTQALVLSPTRELAEQTQKVLLSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQFFGTIIDEMPLQIGDLV 410
            V +TFEAMGL+ +LLRGIY YGFEKPSAIQQRA+ P ++G D+IAQSQSGTGKTAVFS+ ILQ LD +SN+TQALVLSPTRELAEQTQKVLL+LGDYMNVQCHACIGGKSIGEDIRRLD+GVQVVSGTPGRVFDMIRRRNL+T+++KMLVIDEADEMLNKGFKEQIYDIYRYLPP+TQV+LISAT+P EVL+MTKKFMNEP+KVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT++KVDWL  KM EANFTV++MHGDMPQKER+AIM+EFRSG +RVLI TDVWGRGLDVQQVSLVI YDLP+NRELYIHRIGRSGRFGRKGVAINFV+++DI ILRDIEQF+ T IDEMP+ + DL+
Sbjct:  282 VVSTFEAMGLKEDLLRGIYAYGFEKPSAIQQRAIKPAVQGRDLIAQSQSGTGKTAVFSISILQSLDCSSNETQALVLSPTRELAEQTQKVLLALGDYMNVQCHACIGGKSIGEDIRRLDFGVQVVSGTPGRVFDMIRRRNLRTRNIKMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVLLISATMPAEVLEMTKKFMNEPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTTKMREANFTVASMHGDMPQKERDAIMQEFRSGGSRVLITTDVWGRGLDVQQVSLVICYDLPSNRELYIHRIGRSGRFGRKGVAINFVKDEDIRILRDIEQFYSTQIDEMPMNVADLI 657

The following BLAST results are available for this feature:

BLAST of NO29G01070 vs. NCBI_GenBank

BLAST of NO29G01070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM21323.1	1.100e-210	93.40	eukaryotic initiation factor 4a-iii [Nannochlorops...	[more]
ETI35151.1	7.000e-186	84.99	eukaryotic initiation factor 4A-III [Phytophthora ...	[more]
XP_008913147.1	7.000e-186	84.99	eukaryotic initiation factor 4A-III [Phytophthora ...	[more]
OWZ23544.1	7.000e-186	84.99	Eukaryotic initiation factor 4A-III [Phytophthora ...	[more]
POM73622.1	7.000e-186	84.99	Eukaryotic initiation factor 4A-III [Phytophthora ...	[more]
CBJ29803.1	9.200e-186	85.37	conserved unknown protein [Ectocarpus siliculosus]	[more]
XP_002998253.1	9.200e-186	84.99	eukaryotic initiation factor 4A-III, putative [Phy...	[more]
XP_009532514.1	1.200e-185	84.31	hypothetical protein PHYSODRAFT_352190 [Phytophtho...	[more]
XP_024575737.1	2.000e-185	84.04	eukaryotic initiation factor 4a-iii [Plasmopara ha...	[more]
OQR94325.1	1.000e-184	84.84	eukaryotic initiation factor 4A-III [Achlya hypogy...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL061	nonsL061	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR038	ncniR038	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR081	ngnoR081	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK005229	NSK005229	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO29G01070.1	NO29G01070.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601430	gene_8282	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100214g8	gene9100	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO29G01070.1	NO29G01070.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO29G01070 ID=NO29G01070|Name=NO29G01070|organism=Nannochloropsis oceanica|type=gene|length=2222bp
ATGTCCCGGAAACGCACCGCTTCCGGCAGCGGTGAGAAGGAGGAGACCCA
GTATGATGCGACGGAGGAGGTGGAGTTCACTGTCACGAAGGATGTGGAAG
TCAAGGCAACATTCGAGGCCATGGGATTGCGCCCGGAGTTGTTGCGAGgt
aggtgtttcgattattgagtagttgcttcgttgctcacaggggattgagc
gtttgtgtctgttttcagcggagtcttcagagtgttgagttcagctttta
acggtccgccgtcccttccctccctccctccttccctcccttccacagGT
ATCTACGACTACGGCTTTGAAAAACCTTCCGCCATCCAACAACGCGCCGT
CTTGCCTATCATCAAAGGGTATGATATCATTGCTCAGTCGCAGTCGGGGA
CGGGGAAGACGGCTGTGTTCTCGATGGGCATCCTGCAGCGCTTGGACACG
ACCAGTAATGACACCCAGgtacgcctttttctagctttgtacttgtattt
gtgaccgtatgaaaatataagcgcacgccaccgttaaatctaaaacttct
tggacaaatacttagcgtacaatggcacacacctgcaagcggaggtatga
gaaactcaaatcaaagcaaatcttgcctcgctgatacatgtcctcttcaa
cacacgcacacacagGCACTTGTACTCTCCCCTACCCGTGAACTAGCCGA
GCAAACCCAGAAGGTCCTGCTCTCTCTGGGTGACTACATGAACGTGCAAT
GTCATGCCTGCATCGGGGGGAAGAGTATTGGGGAGGACATCCGGCGATTG
GACTATGGAGTGCAAGTCGTGTCCGGGACACCCGGGCGCGTGTTTGACAT
GATCCGTCGTCGAAATCTCAAGACCAAGAGCTTGAAGATGCTGGTGATCG
ATGAAGCGGACGAGATGCTCAACAAGGGATTCAAGGAACAGATCTATGAC
ATTTACCGGTACCTACCCCCGACGACGCAAGTGGTGTTGATCAGCGCCAC
CTTGCCTCAGGAGGTCCTCGACATGACCAAAAAATTTATGAATGAACCGA
TTAAGGTGCTGGTAAAACGCGATGAGTTAACCTTGGAAGGGATCAAGCAG
TTCTTCGTGGCGGTGGAGAAGGAGGAGTGGAAATTCGATACCTTGTGCGA
CTTGTACGACACGCTCACCATCACCCAGGCGGTCATATTCTGCAATACGC
GCAAGAAGgtagcaagggcgacagggagggagggagggagggaagaagga
tggggaaaacgggaggaaggggtcggatatcttttcccccagccttaaat
cacaagggcggagacagtgcatgttatccacttcgtattgattatgatcc
gctttttctctcttacattgtcatggcctctatactaattcacacctatc
ccttccttccttcccttccctctctcccgtctagGTGGACTGGCTGCGAA
ACAAGATGGTGGAAGCCAATTTCACGGTGTCAGCCATGCATGGAGACATG
CCACAGAAGGAGCGGGAGGCGATTATGGAGGAGTTCCGGTCGGGGGCAAC
ACGCGTGTTGATCGCCACGGACGTGTGGGGGCGAGGCTTGGATGTGCAAC
AGgtacgttcttgacgttcctttttttcaaaaaaaaattattgaattatt
gttttactcttctttatttcttcattaaattcaatttcatttttttatta
ttttttcttattttatttttttttaaatcaaaaaatattcctatgtgctt
atttgctttaatcatatgatatacacacttgctttggtaatagaggtgaa
agaagattgcatatatatatgtataaatatatgtatgtatatatatgtat
atatacccttgctttagtaagagaggggaaagaggactgcgaggtatact
cgttttggactagatttcgtatttcccacttcactttccgtctctgtatg
gcctaatgcgtccacacttacacacgccaaattaatgcaccccatgcaca
cgcacacactttctcttttagGTGTCTTTGGTGATCAATTATGACCTGCC
CAACAACCGCGAGCTTTACATTCACCGCATTGGTCGGTCGGGGAGGTTTG
GAAGGAAGGGGGTGGCGATCAATTTTGTGAGGAATGATGATATCAGTATA
TTAAGAGATATAGAGCAGTTCTTCGGCACGATTATAGATGAAATGCCTTT
GCAGATAGGTGATCTGGTTTGA

protein sequence of NO29G01070.1

>NO29G01070.1-protein ID=NO29G01070.1-protein|Name=NO29G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=410bp
MSRKRTASGSGEKEETQYDATEEVEFTVTKDVEVKATFEAMGLRPELLRG
IYDYGFEKPSAIQQRAVLPIIKGYDIIAQSQSGTGKTAVFSMGILQRLDT
TSNDTQALVLSPTRELAEQTQKVLLSLGDYMNVQCHACIGGKSIGEDIRR
LDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIY
DIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIK
QFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANF
TVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINY
DLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQFFGTIIDE
MPLQIGDLV*

Synonyms

Publications